IVF0011191 (gene) Melon (IVF77) v1

Overview


Name	IVF0011191
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	chr02: 13369992 .. 13371406 (-)
RNA-Seq Expression	IVF0011191
Synteny	IVF0011191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCAAACCCTAAACACTCTGCTCTTCAAACATTTCATTACTTTAATCTCAAATCCTCCATTATTATTATTCCTCAATAATCAATCTCTTCATATATATGTTCTTCATGTCTCAAATTGAACCCATTGTCCCCGATTCTTGCTGTATCTCCCCTCGCTTTCATACCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCCCAGCTCCTCCGCCTCTCCGTCTTGAAATTGGACGGCTCTTCTTTCGGTAACTGTTTCCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTCTTTTTCTATTCATTTGCCCTACCTCGATCTGATTGCAAATCCGAATGTTCTGCTTTCGATGTATTTGTTTAATTGATAGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGTACGTTGTTGGGGATTTGGAATACTGAATCCCGTATATTAATGTATTATATATATGTGTGTGTGAATAATGTGTGTGTTGAATTGGAAACTGAAACTTATCAAAAGTAGTTTGTTCAATTATTCTTTATTTGGTTTCAATTGTAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGACCAGGTATTCCCATCTTCCTTGTTTTGTAATCAAAATGAACTACACCCTACCTCCTCCAAATCTGTAGAGGTAATCAAAATACAATGACACACTACTTTTTATCTCTCGCATTTACCTTTATTTTTACCGTTATCGTTAGGGGTCAAATGGTATTATAAAAGGTAAAGGTAAAATAACAAATTTTAATTTTAATTAATAAAAGCAACTAAAAGCGATTCAATTACCTTTGCAATTCAGACACATTACAAATGATTCAACAAATGGAATCCCTGTACAACTACATTCATTTTCATTATGGACTAGCAAAGGTGAGCTTAGTTCGATTTAATTTCTCGTTATCCACTTGTTTCTCGTAAAAAAAGATAAAAACCATTAGAGAAAAACAAGTATAATCTTCAAAAACCAAATTGGTTGATCAAATTAAACAATTATTTCTCTGTTTCTGTTGTTTGTGACATTTGAGTATTGATGAATTATGTGTTGGTTCCCTTATGCAGCTGCATTTTGTGGAATTGAGATGTCCCGTAGAAGAATAAATAGATATGTAGAAAGAAATATAGAAAGGTTGAAGAGATGAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGCGTGAATTATTATTATAAATTTGGTCTAATGATGGGTCTTTTTTCTTCTATTTTTCCCGACACCTAACAAGACGACGG

mRNA sequence

TTTCCAAACCCTAAACACTCTGCTCTTCAAACATTTCATTACTTTAATCTCAAATCCTCCATTATTATTATTCCTCAATAATCAATCTCTTCATATATATGTTCTTCATGTCTCAAATTGAACCCATTGTCCCCGATTCTTGCTGTATCTCCCCTCGCTTTCATACCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCCCAGCTCCTCCGCCTCTCCGTCTTGAAATTGGACGGCTCTTCTTTCGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGACCAGCTGCATTTTGTGGAATTGAGATGTCCCGTAGAAGAATAAATAGATATGTAGAAAGAAATATAGAAAGGTTGAAGAGATGAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGCGTGAATTATTATTATAAATTTGGTCTAATGATGGGTCTTTTTTCTTCTATTTTTCCCGACACCTAACAAGACGACGG

Coding sequence (CDS)

ATGTTCTTCATGTCTCAAATTGAACCCATTGTCCCCGATTCTTGCTGTATCTCCCCTCGCTTTCATACCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCCCAGCTCCTCCGCCTCTCCGTCTTGAAATTGGACGGCTCTTCTTTCGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGACCAGCTGCATTTTGTGGAATTGAGATGTCCCGTAGAAGAATAA

Protein sequence

MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFVELRCPVEE

Homology

[Close]

BLAST of IVF0011191 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-11
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 40  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCY 99
           +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 100 KHFKLMDDKSRIQHFGIRDGDQLHFV 125
            + KL+DD + +Q  GIR+  Q+ F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

[Close]

BLAST of IVF0011191 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-05
Identity = 26/90 (28.89%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 38  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFC 97
           Q + + V K+DG    V V ++ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 39  QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQR-YVQLKQEREGGIQHISWSYVWRTYH 98

Query: 98  LCYKHFKLMDDKSRIQHFGIRDGDQLHFVE 126
           L     KL +D+ +++ +GIR+ D++ F++
Sbjct: 99  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 127

[Close]

BLAST of IVF0011191 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 26/90 (28.89%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 38  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFC 97
           Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYH 89

Query: 98  LCYKHFKLMDDKSRIQHFGIRDGDQLHFVE 126
           L     KL +D+ +++ +GIR+ D++ F++
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 118

[Close]

BLAST of IVF0011191 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-05
Identity = 26/90 (28.89%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 38  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFC 97
           Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLRQEREGGIQHISWSYVWRTYH 89

Query: 98  LCYKHFKLMDDKSRIQHFGIRDGDQLHFVE 126
           L     KL +D+ +++ +GIR+ D++ F++
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 118

[Close]

BLAST of IVF0011191 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 7.8e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60
           MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA
Sbjct: 1   MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60

Query: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120
           TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ
Sbjct: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120

Query: 121 LHFVELRCPVEE 133
           LHFVELRCPVEE
Sbjct: 121 LHFVELRCPVEE 132

[Close]

BLAST of IVF0011191 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 7.8e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60
           MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA
Sbjct: 1   MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60

Query: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120
           TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ
Sbjct: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120

Query: 121 LHFVELRCPVEE 133
           LHFVELRCPVEE
Sbjct: 121 LHFVELRCPVEE 132

[Close]

BLAST of IVF0011191 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.0e-70
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63
           MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 124 VELRCPVEE 133
           VELRCP+EE
Sbjct: 121 VELRCPIEE 129

[Close]

BLAST of IVF0011191 vs. ExPASy TrEMBL
Match: A0A1S3B9C0 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.2e-66
Identity = 123/132 (93.18%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 1   MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60
           MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA
Sbjct: 1   MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60

Query: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120
           TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ
Sbjct: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120

Query: 121 LHFVELRCPVEE 133
           +    L C   E
Sbjct: 121 VFPSSLFCNQNE 132

[Close]

BLAST of IVF0011191 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.6e-49
Identity = 94/121 (77.69%), Postives = 106/121 (87.60%), Query Frame = 0


Query: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63
           M +IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123
            +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 124 V 125
           V
Sbjct: 121 V 121

[Close]

BLAST of IVF0011191 vs. NCBI nr
Match: XP_008443964.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo] >KAA0050134.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa] >TYK06388.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 283 bits (725), Expect = 1.20e-96
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60
           MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA
Sbjct: 1   MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60

Query: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120
           TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ
Sbjct: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120

Query: 121 LHFVELRCPVEE 132
           LHFVELRCPVEE
Sbjct: 121 LHFVELRCPVEE 132

[Close]

BLAST of IVF0011191 vs. NCBI nr
Match: XP_011655436.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN65130.1 hypothetical protein Csa_023500 [Cucumis sativus])

HSP 1 Score: 273 bits (698), Expect = 1.43e-92
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63
           MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 124 VELRCPVEE 132
           VELRCP+EE
Sbjct: 121 VELRCPIEE 129

[Close]

BLAST of IVF0011191 vs. NCBI nr
Match: XP_008443963.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 260 bits (664), Expect = 4.04e-87
Identity = 123/132 (93.18%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 1   MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60
           MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA
Sbjct: 1   MFFMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTA 60

Query: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120
           TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ
Sbjct: 61  TVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120

Query: 121 LHFVELRCPVEE 132
           +    L C   E
Sbjct: 121 VFPSSLFCNQNE 132

[Close]

BLAST of IVF0011191 vs. NCBI nr
Match: XP_038880358.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida])

HSP 1 Score: 223 bits (569), Expect = 5.05e-73
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63
           MS+IEP+VPDSCCISPRF +NSFRRS RY +LPPQL+RLSVLKLDGSSFEVQ+ RTATVA
Sbjct: 1   MSRIEPMVPDSCCISPRFRSNSFRRSFRYKKLPPQLIRLSVLKLDGSSFEVQIARTATVA 60

Query: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQL 121
           AVRDAVESVFC MSMNKED  ISWPHVWGHFCLCYKHFKL+DDKSRI+HFGIRDGDQ+
Sbjct: 61  AVRDAVESVFCGMSMNKEDDKISWPHVWGHFCLCYKHFKLIDDKSRIKHFGIRDGDQI 118

[Close]

BLAST of IVF0011191 vs. NCBI nr
Match: XP_023531556.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209 bits (533), Expect = 3.53e-67
Identity = 96/122 (78.69%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 3   FMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATV 62
           FMS+IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+V
Sbjct: 20  FMSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASV 79

Query: 63  AAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLH 122
           A +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LH
Sbjct: 80  AKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLH 139

Query: 123 FV 124
           FV
Sbjct: 140 FV 141

[Close]

BLAST of IVF0011191 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-23
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 27  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 86
           RRS  YN++P + ++L+VLKLDGSSF +QV +TATV  ++ AVE+ F  + ++     IS
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG-KIS 84

Query: 87  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 125
           WPHVWG FCL Y+  +L+++   +  FGI+DGDQL F+
Sbjct: 85  WPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFI 121

[Close]

BLAST of IVF0011191 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-22
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 17  ISPRFHTN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVR 76
           I PRF ++         S RRS  Y +LPPQ  ++LSV+KL+GS F+V+V +  +VA ++
Sbjct: 21  IDPRFLSSFALNDGGSISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELK 80

Query: 77  DAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 125
            AVE VF    +      ISW HVWGHFCLCY+  +L++DK+ I++ G+ DGDQLHFV
Sbjct: 81  RAVEQVFTISPLEGHGM-ISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFV 136

[Close]

BLAST of IVF0011191 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-21
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 27  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 86
           RR+  Y++LP + +RLSVLKLDGSSF+V V  +ATV  ++ A+E+ F  +   K    IS
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVP-KKGPSKIS 65

Query: 87  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 124
           W HVWGHFCLC+   KL+ D   I ++G++DGD++ F
Sbjct: 66  WSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRF 101

[Close]

BLAST of IVF0011191 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 7.0e-18
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 35  LPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHF 94
           +P + ++L+VLKLDGSSF   V +TATV  ++ AVE+ F  + ++     ISWPHVWG F
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQF 60

Query: 95  CLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 125
           CL Y+  +L+++   +  FGI+DGDQL F+
Sbjct: 61  CLSYEDKRLINESEYLTEFGIKDGDQLRFI 86

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BLAST of IVF0011191 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 40  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCY 99
           +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 100 KHFKLMDDKSRIQHFGIRDGDQLHFV 125
            + KL+DD + +Q  GIR+  Q+ F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

The following BLAST results are available for this feature:

BLAST of IVF0011191 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	1.6e-11	41.86	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	1.0e-05	28.89	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q8VIK1	1.3e-05	28.89	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q3ZBQ4	1.8e-05	28.89	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]

BLAST of IVF0011191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4H4	7.8e-73	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	7.8e-73	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A0A0LT94	8.0e-70	97.67	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A1S3B9C0	9.2e-66	93.18	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumi...	[more]
A0A6J1EHC7	1.6e-49	77.69	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]

BLAST of IVF0011191 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443964.1	1.20e-96	100.00	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_011655436.1	1.43e-92	97.67	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN651...	[more]
XP_008443963.1	4.04e-87	93.18	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_038880358.1	5.05e-73	86.44	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]	[more]
XP_023531556.1	3.53e-67	78.69	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbit...	[more]

BLAST of IVF0011191 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32270.1	2.5e-23	48.98	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	2.1e-22	47.46	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	4.0e-21	48.45	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	7.0e-18	46.67	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	1.2e-12	41.86	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 36..129 e-value: 6.9E-31 score: 108.1
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 8..124
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 40..125 e-value: 1.2E-24 score: 86.1
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 40..126 e-value: 2.15415E-38 score: 123.012
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 8..124
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 36..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011191.1	IVF0011191.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex