IVF0011121 (gene) Melon (IVF77) v1

Overview
NameIVF0011121
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionC2H2-type domain-containing protein
Locationchr11: 3089564 .. 3090080 (-)
RNA-Seq ExpressionIVF0011121
SyntenyIVF0011121
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGACAAATCTCTTCCTTATAATCTTCGACTTAGGAAAGATCACAAGTCTTCTTCTCCAACAGAACATTCCAAAGCTCATAAACAAGACAGAGACTTTCAGGTTTTAATTATTATTATTACCTTCTTTTATCTTTATTATTGTTTGAGTTATTATATATTAATTATTATCATCAAATTTAGGAAAAGGCAAGTGATGAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGATAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGTTCACACCATTGTAAAGTAAGCTTCTTCTTCTTTTCTTTTCCTTCTTCTTATTAATTTTATAATATTTTTTTTTTGAAATTTTGATATATTAATAAATTTAGTATACTAACTTTTTTGAGCAGAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGAAAATTTGGGAGAGAACAAATCATTCAGAAAAAGAAGCAGGAAGGGGATACCAAGAAGAGCACCTTTCTTTTAG

mRNA sequence

ATGGATGACAAATCTCTTCCTTATAATCTTCGACTTAGGAAAGATCACAAGTCTTCTTCTCCAACAGAACATTCCAAAGCTCATAAACAAGACAGAGACTTTCAGGAAAAGGCAAGTGATGAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGATAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGTTCACACCATTGTAAAAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGAAAATTTGGGAGAGAACAAATCATTCAGAAAAAGAAGCAGGAAGGGGATACCAAGAAGAGCACCTTTCTTTTAG

Coding sequence (CDS)

ATGGATGACAAATCTCTTCCTTATAATCTTCGACTTAGGAAAGATCACAAGTCTTCTTCTCCAACAGAACATTCCAAAGCTCATAAACAAGACAGAGACTTTCAGGAAAAGGCAAGTGATGAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGATAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGTTCACACCATTGTAAAAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGAAAATTTGGGAGAGAACAAATCATTCAGAAAAAGAAGCAGGAAGGGGATACCAAGAAGAGCACCTTTCTTTTAG

Protein sequence

MDDKSLPYNLRLRKDHKSSSPTEHSKAHKQDRDFQEKASDEIYVSHLIVDYRCDKCGCSFDIESSLSSHHCKNKNEREAMEIEGHENLGENKSFRKRSRKGIPRRAPFF
Homology
BLAST of IVF0011121 vs. ExPASy TrEMBL
Match: A0A0A0LQ06 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.9e-49
Identity = 101/110 (91.82%), Postives = 105/110 (95.45%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKAHKQDRDFQEKAS-DEIYVSHLIVDYRCDKCGCS 60
           MDDKSLPYNLRLRKDHKSSSPTEHSK HK DRDFQEKAS D+IYVSHLIVDYRC+KCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGHENLGENKSFRKRSRKGIPRRAPFF 110
           FDIESSLSSHHCKNKNEREAMEIEGH  LGENKSFRK+SRKG+PRRAPFF
Sbjct: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPFF 110

BLAST of IVF0011121 vs. ExPASy TrEMBL
Match: A0A6J1EMR9 (uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC111434950 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.1e-27
Identity = 71/112 (63.39%), Postives = 86/112 (76.79%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKAHKQ-DRDFQEKASDEIYVSHLIVDYRCDKCGCS 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  KQ +R+FQEK  +E+     +  Y CDKCGCS
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEV-----LSLYGCDKCGCS 60

Query: 61  FDIESSLSSHHCK--NKNEREAMEIEGHENLGENKSFRKRSRKGIPRRAPFF 110
           FD++ SL SHHCK  NK+EREA E E  E LG++KS RKR+RKGIP RAPFF
Sbjct: 61  FDLQPSLRSHHCKSNNKSEREATENEVEEALGKDKSLRKRTRKGIPTRAPFF 107

BLAST of IVF0011121 vs. ExPASy TrEMBL
Match: A0A6J1D739 (uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017959 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 65/117 (55.56%), Postives = 76/117 (64.96%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKAH-KQDRDFQEKASDEIYVSHLIVDYRCDKCGCS 60
           MDDKSLPYNLRLR   K+S+PTE SK + K +RDFQEK  +EI      ++ RC+KCGC 
Sbjct: 1   MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIG-----LEQRCEKCGCR 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGH-------ENLGENKSFRKRSRKGIPRRAPFF 110
           F IE SL SHHCK KN+     +E         +N    KSFRKRSRKGIP RAP F
Sbjct: 61  FGIEISLHSHHCKCKNKMSEEGMENQVVPEMLDQNNNNKKSFRKRSRKGIPTRAPLF 109

BLAST of IVF0011121 vs. NCBI nr
Match: KAE8651931.1 (hypothetical protein Csa_006531, partial [Cucumis sativus])

HSP 1 Score: 193 bits (491), Expect = 1.02e-61
Identity = 98/107 (91.59%), Postives = 102/107 (95.33%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKAHKQDRDFQEKASDE-IYVSHLIVDYRCDKCGCS 60
           MDDKSLPYNLRLRKDHKSSSPTEHSK HK DRDFQEKASD+ IYVSHLIVDYRC+KCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGHENLGENKSFRKRSRKGIPRRA 106
           FDIESSLSSHHCKNKNEREAMEIEGH  LGENKSFRK+SRKG+PRRA
Sbjct: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRRA 107

BLAST of IVF0011121 vs. NCBI nr
Match: XP_023511836.1 (uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130 bits (326), Expect = 1.43e-36
Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKAHKQ-DRDFQEKASDEIYVSHLIVDYRCDKCGCS 60
           MDDKS+PYNLRLRKDHK+S+ TE SK  KQ +R+FQEK  +E+        Y CDKCGCS
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL-----YGCDKCGCS 60

Query: 61  FDIESSLSSHHCKNKN--EREAMEIEGHENLGENKSFRKRSRKGIPRRAPFF 109
           FD++ SL SHHCKN N  E+EAME E  E LG++KS RKR+RKGIP RAPFF
Sbjct: 61  FDLQPSLRSHHCKNNNKSEKEAMENEVDEGLGKDKSLRKRTRKGIPTRAPFF 107

BLAST of IVF0011121 vs. NCBI nr
Match: KAG6571418.1 (hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128 bits (321), Expect = 8.28e-36
Identity = 71/111 (63.96%), Postives = 84/111 (75.68%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKAHKQ-DRDFQEKASDEIYVSHLIVDYRCDKCGCS 60
           MDDKS+PYNLRLRKDHK+S+ TE SK  KQ +R+FQEK  +E+        Y CDKCGCS
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL-----YGCDKCGCS 60

Query: 61  FDIESSLSSHHCKNKN--EREAMEIEGHENLGENKSFRKRSRKGIPRRAPF 108
           FD++ SL SHHCKN N  E+EAME E  E LG++KS RKR+RKGIP RAPF
Sbjct: 61  FDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTRAPF 106

BLAST of IVF0011121 vs. NCBI nr
Match: XP_022928048.1 (uncharacterized protein LOC111434950 [Cucurbita moschata])

HSP 1 Score: 127 bits (318), Expect = 2.37e-35
Identity = 71/112 (63.39%), Postives = 85/112 (75.89%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKAHKQ-DRDFQEKASDEIYVSHLIVDYRCDKCGCS 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  KQ +R+FQEK  +E+        Y CDKCGCS
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL-----YGCDKCGCS 60

Query: 61  FDIESSLSSHHCK--NKNEREAMEIEGHENLGENKSFRKRSRKGIPRRAPFF 109
           FD++ SL SHHCK  NK+EREA E E  E LG++KS RKR+RKGIP RAPFF
Sbjct: 61  FDLQPSLRSHHCKSNNKSEREATENEVEEALGKDKSLRKRTRKGIPTRAPFF 107

BLAST of IVF0011121 vs. NCBI nr
Match: KAG7011182.1 (hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126 bits (317), Expect = 3.36e-35
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKAHKQ-DRDFQEKASDEIYVSHLIVDYRCDKCGCS 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  KQ +R+FQEK  +E+        Y CDKCGCS
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL-----YGCDKCGCS 60

Query: 61  FDIESSLSSHHCKNKN--EREAMEIEGHENLGENKSFRKRSRKGIPRRAPF 108
           FD++ SL SHHCKN N  E+EAME E  E LG++KS RKR+RKGIP RAPF
Sbjct: 61  FDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTRAPF 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQ064.9e-4991.82C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 P... [more]
A0A6J1EMR99.1e-2763.39uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC1114349... [more]
A0A6J1D7391.4e-1955.56uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
KAE8651931.11.02e-6191.59hypothetical protein Csa_006531, partial [Cucumis sativus][more]
XP_023511836.11.43e-3664.29uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo][more]
KAG6571418.18.28e-3663.96hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022928048.12.37e-3563.39uncharacterized protein LOC111434950 [Cucurbita moschata][more]
KAG7011182.13.36e-3563.06hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..109
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 51..78
score: 10.26301

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011121.2IVF0011121.2mRNA