IVF0011032 (gene) Melon (IVF77) v1

Overview
NameIVF0011032
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Locationchr02: 12601459 .. 12602124 (-)
RNA-Seq ExpressionIVF0011032
SyntenyIVF0011032
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATGCTGATGTTGATAAAGAGAAAGAGGTAAAATTATTAATAGTTCTTTTACTTTTATTTTTTCCAAGACTATTATGTTTGTGTGTGAAAAGTCTATCAATGGTAGAATTGTATCAATGATAAACTATTCTTTCTATGATTTAAGTCTATTAGTGATAGACTATTCTGAAATCTCAATTCTAATTCAAAAGTCTATCAATGATAGGATATTGACAATTTCTATAATTCTTTTCATTGCAATACTAATATTAATATCTACAAAAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTATTATAATAATCACATTTTGTTGTTTTATGATAGACTTAATATATATATGTAGATAAACTCTAATTCAATATTATATATTTTCAGGTTGTTCAAGAAAAGGCAAAAATGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

mRNA sequence

ATGATTGATGCTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAATGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

Coding sequence (CDS)

ATGATTGATGCTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAATGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

Protein sequence

MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL
Homology
[Close]
BLAST of IVF0011032 vs. ExPASy TrEMBL
Match: A0A5A7VDY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00110 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.3e-48
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT+HSPRI+DLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKHSPRIRDLAPSFDLQISQL 214

[Close]
BLAST of IVF0011032 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]
BLAST of IVF0011032 vs. ExPASy TrEMBL
Match: A0A5D3CTS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00380 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 214

[Close]
BLAST of IVF0011032 vs. ExPASy TrEMBL
Match: A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]
BLAST of IVF0011032 vs. ExPASy TrEMBL
Match: A0A5A7TDE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003290 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.4e-46
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 0 

Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEK 
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKT 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 112
           RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTRHSPRIKDLAPSFDLQIS
Sbjct: 162 RPKRQSKPSKKVLENVKEQKNIRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 212

[Close]
BLAST of IVF0011032 vs. NCBI nr
Match: KAA0065297.1 (hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (507), Expect = 1.38e-62
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT+HSPRI+DLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKHSPRIRDLAPSFDLQISQL 214

[Close]
BLAST of IVF0011032 vs. NCBI nr
Match: TYK15261.1 (hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (504), Expect = 3.94e-62
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 214

[Close]
BLAST of IVF0011032 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (504), Expect = 1.55e-60
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]
BLAST of IVF0011032 vs. NCBI nr
Match: TYK22453.1 (uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (504), Expect = 1.55e-60
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]
BLAST of IVF0011032 vs. NCBI nr
Match: KAA0039507.1 (hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (491), Expect = 3.50e-60
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 0 

Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEK 
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKT 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 111
           RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTRHSPRIKDLAPSFDLQIS
Sbjct: 162 RPKRQSKPSKKVLENVKEQKNIRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 212

The following BLAST results are available for this feature:
BLAST of IVF0011032 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011032 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VDY13.3e-4897.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VIA97.4e-4897.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CTS87.4e-4897.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DFX67.4e-4897.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TDE02.4e-4696.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0011032 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065297.11.38e-6297.35hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa][more]
TYK15261.13.94e-6297.35hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa][more]
KAA0031317.11.55e-6097.35uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0... [more]
TYK22453.11.55e-6097.35uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa][more]
KAA0039507.13.50e-6096.40hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa][more]
BLAST of IVF0011032 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011032.2IVF0011032.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome