IVF0011032 (gene) Melon (IVF77) v1

Overview


Name	IVF0011032
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Location	chr02: 12601459 .. 12602124 (-)
RNA-Seq Expression	IVF0011032
Synteny	IVF0011032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGATGCTGATGTTGATAAAGAGAAAGAGGTAAAATTATTAATAGTTCTTTTACTTTTATTTTTTCCAAGACTATTATGTTTGTGTGTGAAAAGTCTATCAATGGTAGAATTGTATCAATGATAAACTATTCTTTCTATGATTTAAGTCTATTAGTGATAGACTATTCTGAAATCTCAATTCTAATTCAAAAGTCTATCAATGATAGGATATTGACAATTTCTATAATTCTTTTCATTGCAATACTAATATTAATATCTACAAAAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTATTATAATAATCACATTTTGTTGTTTTATGATAGACTTAATATATATATGTAGATAAACTCTAATTCAATATTATATATTTTCAGGTTGTTCAAGAAAAGGCAAAAATGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

mRNA sequence

ATGATTGATGCTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAATGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

Coding sequence (CDS)

ATGATTGATGCTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAATGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

Protein sequence

MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL

Homology

[Close]

BLAST of IVF0011032 vs. ExPASy TrEMBL
Match: A0A5A7VDY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00110 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.3e-48
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT+HSPRI+DLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKHSPRIRDLAPSFDLQISQL 214

[Close]

BLAST of IVF0011032 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]

BLAST of IVF0011032 vs. ExPASy TrEMBL
Match: A0A5D3CTS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00380 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 214

[Close]

BLAST of IVF0011032 vs. ExPASy TrEMBL
Match: A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 114
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]

BLAST of IVF0011032 vs. ExPASy TrEMBL
Match: A0A5A7TDE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003290 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.4e-46
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEK 
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKT 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 112
           RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTRHSPRIKDLAPSFDLQIS
Sbjct: 162 RPKRQSKPSKKVLENVKEQKNIRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 212

[Close]

BLAST of IVF0011032 vs. NCBI nr
Match: KAA0065297.1 (hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (507), Expect = 1.38e-62
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPT+HSPRI+DLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKHSPRIRDLAPSFDLQISQL 214

[Close]

BLAST of IVF0011032 vs. NCBI nr
Match: TYK15261.1 (hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (504), Expect = 3.94e-62
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 162 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 214

[Close]

BLAST of IVF0011032 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (504), Expect = 1.55e-60
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]

BLAST of IVF0011032 vs. NCBI nr
Match: TYK22453.1 (uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (504), Expect = 1.55e-60
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEKA
Sbjct: 226 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKA 285

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 113
           RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 286 RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]

BLAST of IVF0011032 vs. NCBI nr
Match: KAA0039507.1 (hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (491), Expect = 3.50e-60
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKMKIMEIATNIEKA 60
           MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAK+KIMEIATNIEK 
Sbjct: 102 MIDADVDKEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKT 161

Query: 61  RPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 111
           RPKRQ KPSKKVLENVKEQKN+RGKKNDSPKPTRHSPRIKDLAPSFDLQIS
Sbjct: 162 RPKRQSKPSKKVLENVKEQKNIRGKKNDSPKPTRHSPRIKDLAPSFDLQIS 212

The following BLAST results are available for this feature:

BLAST of IVF0011032 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDY1	3.3e-48	97.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VIA9	7.4e-48	97.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CTS8	7.4e-48	97.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFX6	7.4e-48	97.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TDE0	2.4e-46	96.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0011032 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065297.1	1.38e-62	97.35	hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa]	[more]
TYK15261.1	3.94e-62	97.35	hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]	[more]
KAA0031317.1	1.55e-60	97.35	uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0...	[more]
TYK22453.1	1.55e-60	97.35	uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa]	[more]
KAA0039507.1	3.50e-60	96.40	hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011032 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011032.2	IVF0011032.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome