IVF0010996 (gene) Melon (IVF77) v1

Overview


Name	IVF0010996
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein FAR1-RELATED SEQUENCE 4
Location	chr04: 19838096 .. 19838523 (+)
RNA-Seq Expression	IVF0010996
Synteny	IVF0010996

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTGATCGTTCCATTCCTAAAGAAATTGCGCATAAGGCTCGTACAAATTTTGGAGTTAATATAAGTTACCAGAAAGCTTGGAGGGCAAAAGAATATATGGTAAAGCTATTACATGGTGACACAGTTGAATCGTATGCATTGATTCCAATATTCTTTGATAAATTGGTTGAATCTAACCTAGGTATGATCAGTTTTTTATATCAAATTTAAATTGATTTGCAGATAGATGTGGATAGACTAATATCACAGTCTATCTAGATAGACCAATATTGGCATCTTTCAAATTCTTTCTGTTCTTTTTTGTTTGTGCTGATAGAAATGTGTTTTTATTTATTATAGGTACATGCACTGCTTTAGAAATGGATGATATGGGTAATTTCAAGTTTTGCTTTATGACTTTTGGTGCATCAATTGAGGGGTGA

mRNA sequence

ATGTCTACTGATCGTTCCATTCCTAAAGAAATTGCGCATAAGGCTCGTACAAATTTTGGAGTTAATATAAGTTACCAGAAAGCTTGGAGGGCAAAAGAATATATGGTAAAGCTATTACATGGTGACACAGTTGAATCGTATGCATTGATTCCAATATTCTTTGATAAATTGGTTGAATCTAACCTAGGTACATGCACTGCTTTAGAAATGGATGATATGGGTAATTTCAAGTTTTGCTTTATGACTTTTGGTGCATCAATTGAGGGGTGA

Coding sequence (CDS)

ATGTCTACTGATCGTTCCATTCCTAAAGAAATTGCGCATAAGGCTCGTACAAATTTTGGAGTTAATATAAGTTACCAGAAAGCTTGGAGGGCAAAAGAATATATGGTAAAGCTATTACATGGTGACACAGTTGAATCGTATGCATTGATTCCAATATTCTTTGATAAATTGGTTGAATCTAACCTAGGTACATGCACTGCTTTAGAAATGGATGATATGGGTAATTTCAAGTTTTGCTTTATGACTTTTGGTGCATCAATTGAGGGGTGA

Protein sequence

MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVESNLGTCTALEMDDMGNFKFCFMTFGASIEG

Homology

[Close]

BLAST of IVF0010996 vs. ExPASy TrEMBL
Match: A0A5A7VNC8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00260 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.9e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60
          MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES
Sbjct: 1  MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60

Query: 61 NLGTCTALEMDDMGNFKFCFMTFGASIEG 90
          NLGTCTALEMDDMGNFKFCFMTFGASIEG
Sbjct: 61 NLGTCTALEMDDMGNFKFCFMTFGASIEG 89

[Close]

BLAST of IVF0010996 vs. ExPASy TrEMBL
Match: A0A5A7T2W2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00260 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.7e-37
Identity = 77/89 (86.52%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1   MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60
           MST+RSIP EI HKARTN G+NISYQKAWRAKE+MVK+LHGDTVESYALIP FFDKLVES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NLGTCTALEMDDMGNFKFCFMTFGASIEG 90
           N GTCTALEMDD G+FKFCFM FGASIEG
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]

BLAST of IVF0010996 vs. ExPASy TrEMBL
Match: A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.7e-37
Identity = 77/89 (86.52%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1   MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60
           MST+RSIP EI HKARTN G+NISYQKAWRAKE+MVK+LHGDTVESYALIP FFDKLVES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NLGTCTALEMDDMGNFKFCFMTFGASIEG 90
           N GTCTALEMDD G+FKFCFM FGASIEG
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]

BLAST of IVF0010996 vs. ExPASy TrEMBL
Match: A0A5A7V7F3 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001240 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.0e-37
Identity = 77/89 (86.52%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 1   MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60
           MSTD SIPKEI HKARTN GVNISYQKAWRAKE+MVK+LHGD  ESYALIP FFDKLVES
Sbjct: 24  MSTDHSIPKEIVHKARTNLGVNISYQKAWRAKEHMVKILHGDRAESYALIPRFFDKLVES 83

Query: 61  NLGTCTALEMDDMGNFKFCFMTFGASIEG 90
           N GTCTALEMDD G+FKFCFM FGASIEG
Sbjct: 84  NPGTCTALEMDDSGHFKFCFMVFGASIEG 112

[Close]

BLAST of IVF0010996 vs. ExPASy TrEMBL
Match: A0A5D3BN82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00270 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1   MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60
           +STDRSIP+EI HKARTN GVNISYQKAWRAKE+MVK+LHGDTVE+YALIP FFDKLVES
Sbjct: 19  ISTDRSIPQEIVHKARTNLGVNISYQKAWRAKEHMVKILHGDTVEAYALIPRFFDKLVES 78

Query: 61  NLGTCTALEMDDMGNFKFCFMTFGASIEG 90
           N GTCT LEMD+ G+FKFCFM FGASIEG
Sbjct: 79  NPGTCTTLEMDNSGHFKFCFMAFGASIEG 107

[Close]

BLAST of IVF0010996 vs. NCBI nr
Match: KAA0068086.1 (uncharacterized protein E6C27_scaffold238G00380 [Cucumis melo var. makuwa] >TYK26070.1 uncharacterized protein E5676_scaffold1185G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (475), Expect = 7.00e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60
          MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES
Sbjct: 1  MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60

Query: 61 NLGTCTALEMDDMGNFKFCFMTFGASIEG 89
          NLGTCTALEMDDMGNFKFCFMTFGASIEG
Sbjct: 61 NLGTCTALEMDDMGNFKFCFMTFGASIEG 89

[Close]

BLAST of IVF0010996 vs. NCBI nr
Match: TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (416), Expect = 6.29e-50
Identity = 77/89 (86.52%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1   MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60
           MST+RSIP EI HKARTN G+NISYQKAWRAKE+MVK+LHGDTVESYALIP FFDKLVES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NLGTCTALEMDDMGNFKFCFMTFGASIEG 89
           N GTCTALEMDD G+FKFCFM FGASIEG
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]

BLAST of IVF0010996 vs. NCBI nr
Match: KAA0052073.1 (uncharacterized protein E6C27_scaffold578G00430 [Cucumis melo var. makuwa] >TYK00687.1 uncharacterized protein E5676_scaffold1371G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (408), Expect = 2.04e-49
Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1   MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60
           +STDRSIP+EI HKARTN GVNISYQKAWRAKE+MVK+LHGDTVE+YALIP FFDKLVES
Sbjct: 19  ISTDRSIPQEIVHKARTNLGVNISYQKAWRAKEHMVKILHGDTVEAYALIPRFFDKLVES 78

Query: 61  NLGTCTALEMDDMGNFKFCFMTFGASIEG 89
           N GTCT LEMD+ G+FKFCFM FGASIEG
Sbjct: 79  NPGTCTTLEMDNSGHFKFCFMAFGASIEG 107

[Close]

BLAST of IVF0010996 vs. NCBI nr
Match: KAA0037812.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (416), Expect = 5.74e-49
Identity = 77/89 (86.52%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1   MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60
           MST+RSIP EI HKARTN G+NISYQKAWRAKE+MVK+LHGDTVESYALIP FFDKLVES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NLGTCTALEMDDMGNFKFCFMTFGASIEG 89
           N GTCTALEMDD G+FKFCFM FGASIEG
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]

BLAST of IVF0010996 vs. NCBI nr
Match: KAA0041797.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK27086.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (404), Expect = 4.35e-48
Identity = 76/89 (85.39%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 1   MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60
           MS DRSI KEI HK RTN GVNISYQKAWRAKE+MVK+LHGDTVESYALIP FFDKLVES
Sbjct: 39  MSIDRSILKEIVHKTRTNLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 98

Query: 61  NLGTCTALEMDDMGNFKFCFMTFGASIEG 89
           N GTCTALE+DD G+FKFCFM FGASIEG
Sbjct: 99  NPGTCTALEIDDCGHFKFCFMAFGASIEG 127

The following BLAST results are available for this feature:

BLAST of IVF0010996 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010996 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VNC8	3.9e-44	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T2W2	2.7e-37	86.52	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BVN2	2.7e-37	86.52	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V7F3	6.0e-37	86.52	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BN82	2.3e-36	84.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0010996 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068086.1	7.00e-60	100.00	uncharacterized protein E6C27_scaffold238G00380 [Cucumis melo var. makuwa] >TYK2...	[more]
TYK02872.1	6.29e-50	86.52	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0052073.1	2.04e-49	84.27	uncharacterized protein E6C27_scaffold578G00430 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0037812.1	5.74e-49	86.52	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0041797.1	4.35e-48	85.39	protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK27086.1 prot...	[more]

BLAST of IVF0010996 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010996.1	IVF0010996.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding