IVF0010937 (gene) Melon (IVF77) v1

Overview
NameIVF0010937
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPhytochromobilin:ferredoxin oxidoreductase
Locationchr10: 22771977 .. 22772219 (+)
RNA-Seq ExpressionIVF0010937
SyntenyIVF0010937
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAATGGCATCGACGAGCTCGAAAGCAAAAGGTTTCTGAATTACTTTCCAGAGTTTCGCTGCGAACATGGTACAATCAACACGAAACGTAGTATGGCAGGAAAGTCTTACGAACATCGACCTTGGGATGAAAGAGGTGAATTTATTGGAGATACTATCAAAAGTTGATGTTAGTTCTCTGCCTTACTAATGTTTTTGGTTAAGTAAATTGATGTAGGTGTAACTTGTACGTTAGACTGA

mRNA sequence

ATGTTCAATGGCATCGACGAGCTCGAAAGCAAAAGGTTTCTGAATTACTTTCCAGAGTTTCGCTGCGAACATGGTACAATCAACACGAAACGTAGTATGGCAGGAAAGTCTTACGAACATCGACCTTGGGATGAAAGAGGTGTAACTTGTACGTTAGACTGA

Coding sequence (CDS)

ATGTTCAATGGCATCGACGAGCTCGAAAGCAAAAGGTTTCTGAATTACTTTCCAGAGTTTCGCTGCGAACATGGTACAATCAACACGAAACGTAGTATGGCAGGAAAGTCTTACGAACATCGACCTTGGGATGAAAGAGGTGTAACTTGTACGTTAGACTGA

Protein sequence

MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERGVTCTLD
Homology
[Close]
BLAST of IVF0010937 vs. ExPASy Swiss-Prot
Match: Q9SR43 (Phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HY2 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.6e-12
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERG 48
           +FNG+DEL +K F++YFPE++ E GT++ KRS+ GKSYE RPWD  G
Sbjct: 279 LFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRPWDLTG 325

[Close]
BLAST of IVF0010937 vs. ExPASy TrEMBL
Match: A0A5D3C8Z0 (Phytochromobilin:ferredoxin oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G001400 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERGVTCTLD 54
          MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERGVTCTLD
Sbjct: 1  MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERGVTCTLD 53

[Close]
BLAST of IVF0010937 vs. ExPASy TrEMBL
Match: A0A5A7VNP0 (Phytochromobilin:ferredoxin oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00420 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.0e-21
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERGVTCTLD 54
           +FNGIDEL SK FL+YFPE+RCE GTINTKRSMAGKSYEHRPWDERGVTCTLD
Sbjct: 112 LFNGIDELGSKSFLDYFPEYRCEDGTINTKRSMAGKSYEHRPWDERGVTCTLD 164

[Close]
BLAST of IVF0010937 vs. ExPASy TrEMBL
Match: A0A1S3BP29 (phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492001 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.2e-17
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERG 48
           +FNGIDEL SK FL+YFPE+RCE GTINTKRSMAGKSYEHRPWDERG
Sbjct: 267 LFNGIDELGSKSFLDYFPEYRCEDGTINTKRSMAGKSYEHRPWDERG 313

[Close]
BLAST of IVF0010937 vs. ExPASy TrEMBL
Match: A0A6J1HBM1 (phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111461368 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-16
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERG 48
           +FNG+DEL SKRFL+YFPE+ CE GT+NTKRSMAGKSYEHRPWD+RG
Sbjct: 268 LFNGVDELGSKRFLDYFPEYYCEDGTVNTKRSMAGKSYEHRPWDKRG 314

[Close]
BLAST of IVF0010937 vs. ExPASy TrEMBL
Match: A0A0A0LXG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616870 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERG 48
           +F+G+DEL SK+FL+YFPE+ CE GTINTKRSMAGKSYEHRPWDERG
Sbjct: 267 LFHGVDELGSKKFLDYFPEYCCEDGTINTKRSMAGKSYEHRPWDERG 313

[Close]
BLAST of IVF0010937 vs. NCBI nr
Match: KAA0049985.1 (phytochromobilin:ferredoxin oxidoreductase [Cucumis melo var. makuwa] >TYK07714.1 phytochromobilin:ferredoxin oxidoreductase [Cucumis melo var. makuwa] >TYK20345.1 phytochromobilin:ferredoxin oxidoreductase [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 7.05e-35
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERGVTCTLD 53
          MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERGVTCTLD
Sbjct: 1  MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERGVTCTLD 53

[Close]
BLAST of IVF0010937 vs. NCBI nr
Match: KAA0067231.1 (phytochromobilin:ferredoxin oxidoreductase [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 1.72e-28
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERGVTCTLD 53
           +FNGIDEL SK FL+YFPE+RCE GTINTKRSMAGKSYEHRPWDERGVTCTLD
Sbjct: 112 LFNGIDELGSKSFLDYFPEYRCEDGTINTKRSMAGKSYEHRPWDERGVTCTLD 164

[Close]
BLAST of IVF0010937 vs. NCBI nr
Match: XP_008450371.1 (PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 7.66e-22
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERG 47
           +FNGIDEL SK FL+YFPE+RCE GTINTKRSMAGKSYEHRPWDERG
Sbjct: 267 LFNGIDELGSKSFLDYFPEYRCEDGTINTKRSMAGKSYEHRPWDERG 313

[Close]
BLAST of IVF0010937 vs. NCBI nr
Match: XP_023515585.1 (phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 8.07e-21
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERG 47
           +FNG+DEL SKRFL+YFPE+ CE GT+NTKRSMAGKSYEHRPWD+RG
Sbjct: 268 LFNGVDELGSKRFLDYFPEYYCEDGTVNTKRSMAGKSYEHRPWDKRG 314

[Close]
BLAST of IVF0010937 vs. NCBI nr
Match: KAG6590181.1 (Phytochromobilin:ferredoxin oxidoreductase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 8.07e-21
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERG 47
           +FNG+DEL SKRFL+YFPE+ CE GT+NTKRSMAGKSYEHRPWD+RG
Sbjct: 268 LFNGVDELGSKRFLDYFPEYYCEDGTVNTKRSMAGKSYEHRPWDKRG 314

[Close]
BLAST of IVF0010937 vs. TAIR 10
Match: AT3G09150.3 (phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) )

HSP 1 Score: 70.1 bits (170), Expect = 6.1e-13
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERG 48
           +FNG+DEL +K F++YFPE++ E GT++ KRS+ GKSYE RPWD  G
Sbjct: 200 LFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRPWDLTG 246

[Close]
BLAST of IVF0010937 vs. TAIR 10
Match: AT3G09150.2 (phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) )

HSP 1 Score: 70.1 bits (170), Expect = 6.1e-13
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERG 48
           +FNG+DEL +K F++YFPE++ E GT++ KRS+ GKSYE RPWD  G
Sbjct: 279 LFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRPWDLTG 325

[Close]
BLAST of IVF0010937 vs. TAIR 10
Match: AT3G09150.1 (phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) )

HSP 1 Score: 70.1 bits (170), Expect = 6.1e-13
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 1   MFNGIDELESKRFLNYFPEFRCEHGTINTKRSMAGKSYEHRPWDERG 48
           +FNG+DEL +K F++YFPE++ E GT++ KRS+ GKSYE RPWD  G
Sbjct: 277 LFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRPWDLTG 323

The following BLAST results are available for this feature:
BLAST of IVF0010937 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SR438.6e-1259.57Phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Arabidopsis thalian... [more]
BLAST of IVF0010937 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C8Z01.2e-24100.00Phytochromobilin:ferredoxin oxidoreductase OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5A7VNP08.0e-2188.68Phytochromobilin:ferredoxin oxidoreductase OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3BP299.2e-1787.23phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Cucumis melo OX=365... [more]
A0A6J1HBM16.0e-1680.85phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Cucurbita moschata ... [more]
A0A0A0LXG31.7e-1580.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616870 PE=3 SV=1[more]
BLAST of IVF0010937 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049985.17.05e-35100.00phytochromobilin:ferredoxin oxidoreductase [Cucumis melo var. makuwa] >TYK07714.... [more]
KAA0067231.11.72e-2888.68phytochromobilin:ferredoxin oxidoreductase [Cucumis melo var. makuwa][more]
XP_008450371.17.66e-2287.23PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Cucumis me... [more]
XP_023515585.18.07e-2180.85phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Cucurbita pepo subsp.... [more]
KAG6590181.18.07e-2180.85Phytochromobilin:ferredoxin oxidoreductase, chloroplastic, partial [Cucurbita ar... [more]
BLAST of IVF0010937 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G09150.36.1e-1359.57phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synth... [more]
AT3G09150.26.1e-1359.57phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synth... [more]
AT3G09150.16.1e-1359.57phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synth... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009249Ferredoxin-dependent bilin reductasePANTHERPTHR34557PHYTOCHROMOBILIN:FERREDOXIN OXIDOREDUCTASE, CHLOROPLASTICcoord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010937.1IVF0010937.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010019 chloroplast-nucleus signaling pathway
biological_process GO:0010024 phytochromobilin biosynthetic process
cellular_component GO:0009507 chloroplast
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0050619 phytochromobilin:ferredoxin oxidoreductase activity
molecular_function GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor