IVF0010930 (gene) Melon (IVF77) v1

Overview


Name	IVF0010930
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonucloprotein
Location	chr05: 25605408 .. 25607234 (-)
RNA-Seq Expression	IVF0010930
Synteny	IVF0010930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTTACCAGTAGCTCTTAAACCCTAATTTTTTTCCTTTCAAATTTTGCTGTCGTTCCATTAAAACCCTACCTTTCTTCTTCGATCTAAAATGGTACTGTGTGAAATTGATTCTTTTGTAGAACATATATTGATTTTAGTTTCATTGGTTTGCATGAATTTTAGTGGTGGTTGTGTTTTTTGCAGACAGGAGAAGCTGTGAATCCCAAAGCCTATCCTTTAGCTGATGCTCAGCTTACGATTACCATTCTTGACCTCGTTCAGCAAGCTGCTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAGGTAGCGTGCTTTGTTTAATGTTTGTGTTTTTTCGTTTGAAGAAAGTTATATATTTTTAAGAAGTATTGGGTGAGGATTTTGTATGGTGTTATTTGTTTCCCTTGGCTGATAGTTATATTTTGATGGATTTTTCAGCTACTAAGACGCTGAATAGAGGGATTTCTGAGTTTGTTGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTTCCCTTGTTGGCTGAAGATAAGGTAACACTAAAAAAATTTTGAACTTCAGATTGAAAATCATGGGTTTCTGTTACTTCTTGATAAGTTGGCAAATGGGAAAATGAACATATTTTAGTATTGCTATATCTCCCTTGCAATTTATTGCACTATTTTTTAACTAATGAAACCTTGGTGTAGACAATGTTAGGAATTAGCTTTTATATAGACGTGGTAGTTAGCAGCAATTTCTCTTAATATCTATTTCTTTCTTATGAGACACCCTCAATATGGAGGCCCTTGCCATTATAGCTTTACATTTAATCCATATTTGTGTCATGAAAAGCTGTGGTGGTTTATCGGGAATAAATGCAATGAGGTAGCGGAAGAGCTTCCAAAATGTTTGTTATATTTTTAGCCTATAGAGGATTAAGTAGAGTGGTAATGGACAAGGTTTCTCGAGGTCTGAGGTTCATTTCCCATCACCTTTCTTGTTTATAAGGTTTAATAAATCCACAATTTCAGTTATCTTCCCCCAATTCGTTCTTCTTTATAGTTAACTTCAGGCCAGTGTTCCCTATATTAGAACATTTATATTTGCTTCTAACTTTAGTTGTACACTTAGTCAGAAGCTCAAATTAATTCTATAATGCAAAAGATTGAAAGATGAAATTTATCCCTTACTTTAGCCCTGTGATAGAGTCTCGTTTTGGATGGATTTAGAGGCGGATTACATATCTTGTTTGATAACCATCTTGTTGGAAAACTTTTCTTACTTACATGTTATGTATGCCAGATATTAGGATGATTTCTTTTCCAGACTTCAATAATCAATGTAATAAAAACATGTGTCCCAAAATGACAAATAATTCTTAATTCTCTATGATATAACAAAATTATGTTGAAACATGCAGAATGTGCCTTATGTATTTGTCCCTTCAAAGCAAGCTCTCGGCCGAGCATGCGGAGTCACAAGACCTGTAATTGCATGTTCCGTAACAACAAACGAGGGAAGCCAATTGAAATCTCAAATACAACAACTGAAGGTAAAAAAGAATTACTACTACCATCTCTTTTTTTGAGCTGTTATCTTTGTAAAAGCATCGCTTTCCCCGTTGATACATTGTGTATTTCCTTCTAAATGCAGGATGCCATTGAGAAGCTGTTGATCTGAAATGTTATATATATTCTATATGGCATTCGGTATGATGGGCTTCTTTGATCATCGTCATGGTCACTGCTCTGGAGGCTTTGACTGAACTTGTTGTGCAATTAGGGGAAAAAATGTCCTGGTATTAACCTATATATTGAGCTTCTTCTTCTTCC

mRNA sequence

CAATTTACCAGTAGCTCTTAAACCCTAATTTTTTTCCTTTCAAATTTTGCTGTCGTTCCATTAAAACCCTACCTTTCTTCTTCGATCTAAAATGACAGGAGAAGCTGTGAATCCCAAAGCCTATCCTTTAGCTGATGCTCAGCTTACGATTACCATTCTTGACCTCGTTCAGCAAGCTGCTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAGCTACTAAGACGCTGAATAGAGGGATTTCTGAGTTTGTTGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTTCCCTTGTTGGCTGAAGATAAGAATGTGCCTTATGTATTTGTCCCTTCAAAGCAAGCTCTCGGCCGAGCATGCGGAGTCACAAGACCTGTAATTGCATGTTCCGTAACAACAAACGAGGGAAGCCAATTGAAATCTCAAATACAACAACTGAAGGATGCCATTGAGAAGCTGTTGATCTGAAATGTTATATATATTCTATATGGCATTCGGTATGATGGGCTTCTTTGATCATCGTCATGGTCACTGCTCTGGAGGCTTTGACTGAACTTGTTGTGCAATTAGGGGAAAAAATGTCCTGGTATTAACCTATATATTGAGCTTCTTCTTCTTCC

Coding sequence (CDS)

ATGACAGGAGAAGCTGTGAATCCCAAAGCCTATCCTTTAGCTGATGCTCAGCTTACGATTACCATTCTTGACCTCGTTCAGCAAGCTGCTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAGCTACTAAGACGCTGAATAGAGGGATTTCTGAGTTTGTTGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTTCCCTTGTTGGCTGAAGATAAGAATGTGCCTTATGTATTTGTCCCTTCAAAGCAAGCTCTCGGCCGAGCATGCGGAGTCACAAGACCTGTAATTGCATGTTCCGTAACAACAAACGAGGGAAGCCAATTGAAATCTCAAATACAACAACTGAAGGATGCCATTGAGAAGCTGTTGATCTGA

Protein sequence

MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

Homology

[Close]

BLAST of IVF0010930 vs. ExPASy Swiss-Prot
Match: Q5XH16 (NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-53
Identity = 105/128 (82.03%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADAQLT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQ 120

Query: 121 DAIEKLLI 129
            AIE+LL+
Sbjct: 121 QAIERLLV 128

[Close]

BLAST of IVF0010930 vs. ExPASy Swiss-Prot
Match: Q6P8E9 (NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-53
Identity = 105/128 (82.03%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADAQLT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  EGSQLK QIQ L+
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of IVF0010930 vs. ExPASy Swiss-Prot
Match: Q3B8S0 (NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 9.2e-52
Identity = 102/128 (79.69%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of IVF0010930 vs. ExPASy Swiss-Prot
Match: P55769 (NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 9.2e-52
Identity = 102/128 (79.69%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of IVF0010930 vs. ExPASy Swiss-Prot
Match: Q4R5C6 (NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.2e-52
Identity = 102/128 (79.69%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of IVF0010930 vs. ExPASy TrEMBL
Match: A0A6J1HQD3 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111465723 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. ExPASy TrEMBL
Match: A0A444WXD4 (Ribonucloprotein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000462 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. ExPASy TrEMBL
Match: A0A0A0LF58 (Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_2G006160 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. ExPASy TrEMBL
Match: A0A6J1G368 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111450370 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. ExPASy TrEMBL
Match: A0A1S3C622 (Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103497328 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. NCBI nr
Match: XP_004139318.1 (NHP2-like protein 1 [Cucumis sativus] >XP_008457690.1 PREDICTED: NHP2-like protein 1 [Cucumis melo] >XP_020204814.1 NHP2-like protein 1 isoform X2 [Cajanus cajan] >XP_022946218.1 NHP2-like protein 1 [Cucurbita moschata] >XP_022966005.1 NHP2-like protein 1 [Cucurbita maxima] >XP_022999182.1 NHP2-like protein 1 [Cucurbita maxima] >XP_023521484.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023521798.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023536915.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023547054.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_025615507.1 NHP2-like protein 1 [Arachis hypogaea] >XP_025683384.1 NHP2-like protein 1 [Arachis hypogaea] >XP_038889698.1 NHP2-like protein 1 [Benincasa hispida] >KAG6586399.1 NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030393.1 NHP2-like protein 1 [Cucurbita argyrosperma subsp. argyrosperma] >TKY54874.1 NHP2 protein 1 [Spatholobus suberectus] >KAG6599406.1 NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KGN60670.1 hypothetical protein Csa_019317 [Cucumis sativus])

HSP 1 Score: 249 bits (636), Expect = 3.37e-83
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. NCBI nr
Match: XP_020206464.1 (NHP2-like protein 1 [Cajanus cajan])

HSP 1 Score: 248 bits (634), Expect = 6.81e-83
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. NCBI nr
Match: XP_022142972.1 (NHP2-like protein 1 [Momordica charantia] >XP_022938234.1 NHP2-like protein 1 [Cucurbita moschata])

HSP 1 Score: 248 bits (633), Expect = 9.68e-83
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLAD+QLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. NCBI nr
Match: XP_027332262.1 (NHP2-like protein 1 isoform X2 [Abrus precatorius] >XP_035540269.1 NHP2-like protein 1 [Juglans regia] >XP_041004966.1 NHP2-like protein 1 [Juglans microcarpa x Juglans regia] >XP_042973391.1 NHP2-like protein 1 [Carya illinoinensis] >KAF5482154.1 hypothetical protein F2P56_002745 [Juglans regia] >KAG2718741.1 hypothetical protein I3760_03G234100 [Carya illinoinensis] >KAG6662449.1 hypothetical protein CIPAW_03G243300 [Carya illinoinensis] >KAG6723912.1 hypothetical protein I3842_03G231500 [Carya illinoinensis] >KAG7989200.1 hypothetical protein I3843_03G225900 [Carya illinoinensis])

HSP 1 Score: 248 bits (633), Expect = 9.68e-83
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. NCBI nr
Match: XP_002524478.1 (NHP2-like protein 1 [Ricinus communis] >EEF37918.1 ribosomal protein l7ae, putative [Ricinus communis])

HSP 1 Score: 248 bits (633), Expect = 9.68e-83
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLK+QIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKTQIQQLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 235.0 bits (598), Expect = 3.5e-62
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 234.2 bits (596), Expect = 5.9e-62
Identity = 119/128 (92.97%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLAD+QL+ITI+DLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 230.3 bits (586), Expect = 8.5e-61
Identity = 118/128 (92.19%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of IVF0010930 vs. TAIR 10
Match: AT5G20160.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 218.4 bits (555), Expect = 3.3e-57
Identity = 120/160 (75.00%), Postives = 123/160 (76.88%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE------------------- 60
           MTGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANE                   
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMF 60

Query: 61  -------------ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQA 120
                        ATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQA
Sbjct: 61  VKLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 120

Query: 121 LGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 129
           LGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 121 LGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 160

[Close]

BLAST of IVF0010930 vs. TAIR 10
Match: AT4G12600.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 204.9 bits (520), Expect = 3.8e-53
Identity = 118/183 (64.48%), Postives = 122/183 (66.67%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDK-------------------------------------------- 120
           EPLEILLHLPLLAEDK                                            
Sbjct: 61  EPLEILLHLPLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWL 120

Query: 121 -----------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEK 129
                      NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LKDAIEK
Sbjct: 121 LDSSFEIVIVDNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEK 180

The following BLAST results are available for this feature:

BLAST of IVF0010930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XH16	2.2e-53	82.03	NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1	[more]
Q6P8E9	2.2e-53	82.03	NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1	[more]
Q3B8S0	9.2e-52	79.69	NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3	[more]
P55769	9.2e-52	79.69	NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3	[more]
Q4R5C6	9.2e-52	79.69	NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1	[more]

BLAST of IVF0010930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQD3	1.6e-62	100.00	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111465723 PE=3 SV=1	[more]
A0A444WXD4	1.6e-62	100.00	Ribonucloprotein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000462 PE=3 SV=1	[more]
A0A0A0LF58	1.6e-62	100.00	Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_2G006160 PE=3 SV=1	[more]
A0A6J1G368	1.6e-62	100.00	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111450370 PE=3 SV=1	[more]
A0A1S3C622	1.6e-62	100.00	Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103497328 PE=3 SV=1	[more]

BLAST of IVF0010930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139318.1	3.37e-83	100.00	NHP2-like protein 1 [Cucumis sativus] >XP_008457690.1 PREDICTED: NHP2-like prote...	[more]
XP_020206464.1	6.81e-83	99.22	NHP2-like protein 1 [Cajanus cajan]	[more]
XP_022142972.1	9.68e-83	99.22	NHP2-like protein 1 [Momordica charantia] >XP_022938234.1 NHP2-like protein 1 [C...	[more]
XP_027332262.1	9.68e-83	98.44	NHP2-like protein 1 isoform X2 [Abrus precatorius] >XP_035540269.1 NHP2-like pro...	[more]
XP_002524478.1	9.68e-83	99.22	NHP2-like protein 1 [Ricinus communis] >EEF37918.1 ribosomal protein l7ae, putat...	[more]

BLAST of IVF0010930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20160.1	3.5e-62	93.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	5.9e-62	92.97	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	8.5e-61	92.19	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.2	3.3e-57	75.00	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.2	3.8e-53	64.48	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 38..48 score: 87.27 coord: 21..36 score: 65.0 coord: 82..94 score: 83.08 coord: 8..21 score: 62.86
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 70..80 score: 59.09 coord: 80..94 score: 51.21 coord: 35..49 score: 47.88 coord: 54..67 score: 48.7
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..128 e-value: 3.9E-58 score: 196.6
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 6..126
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 23..111 e-value: 1.1E-26 score: 92.3
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 4..128
None	No IPR available	PANTHER	PTHR23105:SF158	NHP2-LIKE PROTEIN 1	coord: 4..128
IPR004037	Ribosomal protein L7Ae conserved site	PROSITE	PS01082	RIBOSOMAL_L7AE	coord: 73..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010930.2	IVF0010930.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031428	box C/D RNP complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding