IVF0010907 (gene) Melon (IVF77) v1

Overview


Name	IVF0010907
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L15
Location	chr02: 18535729 .. 18536043 (-)
RNA-Seq Expression	IVF0010907
Synteny	IVF0010907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGACTACATACCAGATGGTTGGAGGCGGAAGAAGTTGTGGTTGGAGACTGAAGATGACGACTGGTTGGAGACCGAAGATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAACGAAGGCGTCGTTGGAGGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGAGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAAAACAAGGGTAA

mRNA sequence

ATGAAAGACTACATACCAGATGGTTGGAGGCGGAAGAAGTTGTGGTTGGAGACTGAAGATGACGACTGGTTGGAGACCGAAGATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAACGAAGGCGTCGTTGGAGGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGAGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAAAACAAGGGTAA

Coding sequence (CDS)

ATGAAAGACTACATACCAGATGGTTGGAGGCGGAAGAAGTTGTGGTTGGAGACTGAAGATGACGACTGGTTGGAGACCGAAGATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAACGAAGGCGTCGTTGGAGGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGAGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAAAACAAGGGTAA

Protein sequence

MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRKKASCGRRRRAEEGVLENGKAEEERKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG

Homology

[Close]

BLAST of IVF0010907 vs. ExPASy TrEMBL
Match: A0A5D3CCS9 (50S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001030 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.6e-51
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRKKASCGRRRRA 60
           MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRR KASCGRRRRA
Sbjct: 1   MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60

Query: 61  EEGVLENGKAEEERKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 105
           EEGVLENGKAEE RKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG
Sbjct: 61  EEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104

[Close]

BLAST of IVF0010907 vs. ExPASy TrEMBL
Match: A0A5A7T8R2 (Putative arabinose 5-phosphate isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001640 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.3e-30
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRKKASCGRRRRA 60
          MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRR KASCGRRRRA
Sbjct: 1  MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60

Query: 61 EEGVLEN 68
          EEGVLEN
Sbjct: 61 EEGVLEN 67

[Close]

BLAST of IVF0010907 vs. ExPASy TrEMBL
Match: A0A5D3CTI7 (Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00120 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.1e-19
Identity = 67/108 (62.04%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 8   GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRKK---------ASCGRRR 67
           GWRRKK                  LEAEEGVVGG  RRRWRRKK            GRRR
Sbjct: 4   GWRRKKA----------------SLEAEEGVVGGRIRRRWRRKKTFLEAEEGVVGGGRRR 63

Query: 68  RAEEGVL--ENGKAEEERKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 105
           RA+EGVL  ENGK EE RKSWRIYWRGRKSRR MEEEKFA   FLKQG
Sbjct: 64  RAKEGVLNVENGKDEEGRKSWRIYWRGRKSRRGMEEEKFASVFFLKQG 95

[Close]

BLAST of IVF0010907 vs. ExPASy TrEMBL
Match: A0A5A7SHI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001610 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 34  AEEGVVGGER--------RRRWRRKKASC---------GRRRRAEEGVLENGKAEEERKS 93
           AEE VVGG R           WR+KKAS          GRRRRAEEGVLENGKAEE RKS
Sbjct: 82  AEEVVVGGGRSCGWRPKMTTGWRQKKASLEAKEGIVGGGRRRRAEEGVLENGKAEEGRKS 141

Query: 94  WRIYWRGRKSRRRMEEEKFAPGLFLKQG 105
           WRIYWRGRKSRRRMEEEKFAPG FLKQG
Sbjct: 142 WRIYWRGRKSRRRMEEEKFAPGFFLKQG 169

[Close]

BLAST of IVF0010907 vs. ExPASy TrEMBL
Match: A0A5D3C8N2 (40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00170 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MKDYIPD----GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRKKASCGR 60
           +KD  P     GWRRKKL        WLETEDDDWLEAEEGVVGGERRRRW+RKKAS   
Sbjct: 324 IKDLAPSGRSCGWRRKKL--------WLETEDDDWLEAEEGVVGGERRRRWKRKKASL-- 380

Query: 61  RRRAEEGVL 66
              AEEGV+
Sbjct: 384 --EAEEGVV 380

[Close]

BLAST of IVF0010907 vs. NCBI nr
Match: KAA0034559.1 (50S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal protein L15 [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (527), Expect = 6.30e-64
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRKKASCGRRRRA 60
           MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRR KASCGRRRRA
Sbjct: 1   MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60

Query: 61  EEGVLENGKAEEERKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104
           EEGVLENGKAEE RKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG
Sbjct: 61  EEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104

[Close]

BLAST of IVF0010907 vs. NCBI nr
Match: KAA0038031.1 (putative arabinose 5-phosphate isomerase [Cucumis melo var. makuwa] >TYK20571.1 putative arabinose 5-phosphate isomerase [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 2.08e-36
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRKKASCGRRRRA 60
          MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRR KASCGRRRRA
Sbjct: 1  MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60

Query: 61 EEGVLEN 67
          EEGVLEN
Sbjct: 61 EEGVLEN 67

[Close]

BLAST of IVF0010907 vs. NCBI nr
Match: KAA0025306.1 (hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 2.06e-25
Identity = 61/97 (62.89%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 8   GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRKKASCGRRRRAEEGVLEN 67
           GWR+KK                  LEA+EG+VGG             GRRRRAEEGVLEN
Sbjct: 102 GWRQKKA----------------SLEAKEGIVGG-------------GRRRRAEEGVLEN 161

Query: 68  GKAEEERKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104
           GKAEE RKSWRIYWRGRKSRRRMEEEKFAPG FLKQG
Sbjct: 162 GKAEEGRKSWRIYWRGRKSRRRMEEEKFAPGFFLKQG 169

[Close]

BLAST of IVF0010907 vs. NCBI nr
Match: KAA0063229.1 (lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 1.56e-23
Identity = 67/108 (62.04%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 8   GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRKKASC---------GRRR 67
           GWRRKK                  LEAEEGVVGG  RRRWRRKK            GRRR
Sbjct: 4   GWRRKKA----------------SLEAEEGVVGGRIRRRWRRKKTFLEAEEGVVGGGRRR 63

Query: 68  RAEEGVL--ENGKAEEERKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104
           RA+EGVL  ENGK EE RKSWRIYWRGRKSRR MEEEKFA   FLKQG
Sbjct: 64  RAKEGVLNVENGKDEEGRKSWRIYWRGRKSRRGMEEEKFASVFFLKQG 95

[Close]

BLAST of IVF0010907 vs. NCBI nr
Match: TYK08201.1 (40S ribosomal protein S15-4 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 4.56e-14
Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MKDYIPDG----WRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRKKASCGR 60
           +KD  P G    WRRKKLWLETEDDD        WLEAEEGVVGGERRRRW+RKKAS   
Sbjct: 324 IKDLAPSGRSCGWRRKKLWLETEDDD--------WLEAEEGVVGGERRRRWKRKKASL-- 380

Query: 61  RRRAEEGVL 65
              AEEGV+
Sbjct: 384 --EAEEGVV 380

The following BLAST results are available for this feature:

BLAST of IVF0010907 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCS9	6.6e-51	98.08	50S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7T8R2	8.3e-30	98.51	Putative arabinose 5-phosphate isomerase OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CTI7	5.1e-19	62.04	Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G...	[more]
A0A5A7SHI4	1.5e-18	70.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C8N2	1.3e-11	65.22	40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of IVF0010907 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034559.1	6.30e-64	98.08	50S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal p...	[more]
KAA0038031.1	2.08e-36	98.51	putative arabinose 5-phosphate isomerase [Cucumis melo var. makuwa] >TYK20571.1 ...	[more]
KAA0025306.1	2.06e-25	62.89	hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa]	[more]
KAA0063229.1	1.56e-23	62.04	lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [...	[more]
TYK08201.1	4.56e-14	65.22	40S ribosomal protein S15-4 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0010907 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010907.1	IVF0010907.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901135	carbohydrate derivative metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0097367	carbohydrate derivative binding
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome