IVF0010832 (gene) Melon (IVF77) v1

Overview


Name	IVF0010832
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr08: 22110503 .. 22110772 (+)
RNA-Seq Expression	IVF0010832
Synteny	IVF0010832

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTCCGAGGAAAATGTGAAATTAGATGGATCTCTGAATCTCGTGTCGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGACGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCATCGCCAAAAAATGCTCTCATTCCGACAAGGTGTAGATTTACACCAAATCATTCGTCGTTTAACGAGAACCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATATCGAAGAAGAAGAGAAAATAG

mRNA sequence

ATGCTCTTCCGAGGAAAATGTGAAATTAGATGGATCTCTGAATCTCGTGTCGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGACGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCATCGCCAAAAAATGCTCTCATTCCGACAAGGTGTAGATTTACACCAAATCATTCGTCGTTTAACGAGAACCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATATCGAAGAAGAAGAGAAAATAG

Coding sequence (CDS)

ATGCTCTTCCGAGGAAAATGTGAAATTAGATGGATCTCTGAATCTCGTGTCGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGACGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCATCGCCAAAAAATGCTCTCATTCCGACAAGGTGTAGATTTACACCAAATCATTCGTCGTTTAACGAGAACCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATATCGAAGAAGAAGAGAAAATAG

Protein sequence

MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRFTPNHSSFNENRYQSSSITSDRTISKKKRK

Homology

[Close]

BLAST of IVF0010832 vs. ExPASy TrEMBL
Match: A0A5D3DUF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001500 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.1e-38
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTISKKKR 89
          TPNHSSFNENRYQSSSITSDRTI ++++
Sbjct: 61 TPNHSSFNENRYQSSSITSDRTIEEEEK 88

[Close]

BLAST of IVF0010832 vs. ExPASy TrEMBL
Match: A0A5A7V7N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001160 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.6e-37
Identity = 81/88 (92.05%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWIS+SRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISKSRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTISKKKR 89
          TPNHSSFN+NRYQSSSITSDRTI ++++
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTIEEEEK 88

[Close]

BLAST of IVF0010832 vs. ExPASy TrEMBL
Match: A0A5A7UKV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001280 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALI TRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALISTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTISKKKR 89
          TPNHSSFN+NRYQSSSITSDRTI ++++
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTIEEEEK 88

[Close]

BLAST of IVF0010832 vs. ExPASy TrEMBL
Match: A0A5A7SWM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00630 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 79/88 (89.77%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLF+GKCEIRWISESRV NEA+DSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFQGKCEIRWISESRVENEAKDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTISKKKR 89
          TPNHSSFN+NRYQSSSITSDRTI ++++
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTIEEEEK 88

[Close]

BLAST of IVF0010832 vs. ExPASy TrEMBL
Match: A0A5A7UL90 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G002080 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISES VGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESHVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSIT 79
          TPNHSSFNENRYQSSSIT
Sbjct: 61 TPNHSSFNENRYQSSSIT 78

[Close]

BLAST of IVF0010832 vs. NCBI nr
Match: KAA0039167.1 (uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0052049.1 uncharacterized protein E6C27_scaffold578G00120 [Cucumis melo var. makuwa] >KAA0061151.1 uncharacterized protein E6C27_scaffold753G00180 [Cucumis melo var. makuwa] >TYK05359.1 uncharacterized protein E5676_scaffold83G00280 [Cucumis melo var. makuwa] >TYK12370.1 uncharacterized protein E5676_scaffold302G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 6.41e-52
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTI 83
          TPNHSSFNENRYQSSSITSDRTI
Sbjct: 61 TPNHSSFNENRYQSSSITSDRTI 83

[Close]

BLAST of IVF0010832 vs. NCBI nr
Match: KAA0061741.1 (uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (416), Expect = 7.50e-51
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWIS+SRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISKSRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTI 83
          TPNHSSFN+NRYQSSSITSDRTI
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTI 83

[Close]

BLAST of IVF0010832 vs. NCBI nr
Match: KAA0054315.1 (uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12351.1 uncharacterized protein E5676_scaffold302G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (412), Expect = 3.06e-50
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALI TRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALISTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTI 83
          TPNHSSFN+NRYQSSSITSDRTI
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTI 83

[Close]

BLAST of IVF0010832 vs. NCBI nr
Match: KAA0035440.1 (uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (404), Expect = 6.10e-49
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLF+GKCEIRWISESRV NEA+DSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFQGKCEIRWISESRVENEAKDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSITSDRTI 83
          TPNHSSFN+NRYQSSSITSDRTI
Sbjct: 61 TPNHSSFNDNRYQSSSITSDRTI 83

[Close]

BLAST of IVF0010832 vs. NCBI nr
Match: KAA0056673.1 (uncharacterized protein E6C27_scaffold288G002080 [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (395), Expect = 4.99e-47
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          MLFRGKCEIRWISES VGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESHVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 TPNHSSFNENRYQSSSIT 78
          TPNHSSFNENRYQSSSIT
Sbjct: 61 TPNHSSFNENRYQSSSIT 78

The following BLAST results are available for this feature:

BLAST of IVF0010832 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010832 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUF5	7.1e-38	94.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V7N3	4.6e-37	92.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UKV8	1.3e-36	92.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWM4	1.1e-35	89.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UL90	1.3e-34	98.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0010832 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039167.1	6.41e-52	100.00	uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0...	[more]
KAA0061741.1	7.50e-51	97.59	uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa]	[more]
KAA0054315.1	3.06e-50	97.59	uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0035440.1	6.10e-49	95.18	uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa]	[more]
KAA0056673.1	4.99e-47	98.72	uncharacterized protein E6C27_scaffold288G002080 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0010832 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010832.1	IVF0010832.1	mRNA