IVF0010779 (gene) Melon (IVF77) v1

Overview
NameIVF0010779
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L2, chloroplastic
Locationchr12: 1056556 .. 1056957 (-)
RNA-Seq ExpressionIVF0010779
SyntenyIVF0010779
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTCAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAAAGCAGCAGATGTTGTAGCGAAACGTATTGCAAAAGAGGGGAAATTGGCCACATTCAGATTACCGTCTAGGGAGGTCTGTTTGATATCCAAAAGTTGCTCCGTAATAGTTGGGCAAATGGAGAATGTTGGGGTCAACCAGAAAAGTTTCGAAAGAGCCGAATCTCAATGTTGGCTAGGTAAGCATCCTGTAGTAAGGGGAGTAGTTATGAACCCTGTAGACCATCCCCATAAGGGTGGTGAAGGGAGGGCCCAAATTGGTAGAAAAAACCCGCAACCCCTTAGGGTTATCCTGCACTTGGAAGAAGTAGAAAAAGGAATCAATATAGTGAGAATTTGA

mRNA sequence

ATGCCCTCAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAAAGCAGCAGATGTTGTAGCGAAACGTATTGCAAAAGAGGGGAAATTGGCCACATTCAGATTACCGTCTAGGGAGGTCTGTTTGATATCCAAAAGTTGCTCCGTAATAGTTGGGCAAATGGAGAATGTTGGGGTCAACCAGAAAAGTTTCGAAAGAGCCGAATCTCAATGTTGGCTAGGTAAGCATCCTGTAGTAAGGGGAGTAGTTATGAACCCTGTAGACCATCCCCATAAGGGTGGTGAAGGGAGGGCCCAAATTGGTAGAAAAAACCCGCAACCCCTTAGGGTTATCCTGCACTTGGAAGAAGTAGAAAAAGGAATCAATATAGTGAGAATTTGA

Coding sequence (CDS)

ATGCCCTCAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAAAGCAGCAGATGTTGTAGCGAAACGTATTGCAAAAGAGGGGAAATTGGCCACATTCAGATTACCGTCTAGGGAGGTCTGTTTGATATCCAAAAGTTGCTCCGTAATAGTTGGGCAAATGGAGAATGTTGGGGTCAACCAGAAAAGTTTCGAAAGAGCCGAATCTCAATGTTGGCTAGGTAAGCATCCTGTAGTAAGGGGAGTAGTTATGAACCCTGTAGACCATCCCCATAAGGGTGGTGAAGGGAGGGCCCAAATTGGTAGAAAAAACCCGCAACCCCTTAGGGTTATCCTGCACTTGGAAGAAGTAGAAAAAGGAATCAATATAGTGAGAATTTGA

Protein sequence

MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNPQPLRVILHLEEVEKGINIVRI
Homology
[Close]
BLAST of IVF0010779 vs. ExPASy Swiss-Prot
Match: P21434 (50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi OX=4089 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-44
Identity = 98/134 (73.13%), Postives = 105/134 (78.36%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV  ISK+CS  VGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRSISKNCSATVGQ 192

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNPQPLRVILH 120
           + NVGVNQKS  RA S+ WLGK PVVRGVVMNPVDHP    +G  Q+  KNPQPL VILH
Sbjct: 193 VGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPMGVVKGEPQLVEKNPQPLGVILH 252

Query: 121 L-EEVEKGINIVRI 134
           L EEVEKGINIV I
Sbjct: 253 LEEEVEKGINIVII 266

[Close]
BLAST of IVF0010779 vs. ExPASy Swiss-Prot
Match: Q0G9F5 (50S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 9.6e-44
Identity = 89/112 (79.46%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT RLPS EV LISK+CS  VGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQ 192

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNP 113
           + NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRK P
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP 244

[Close]
BLAST of IVF0010779 vs. ExPASy Swiss-Prot
Match: Q0G9H8 (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 9.6e-44
Identity = 89/112 (79.46%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT RLPS EV LISK+CS  VGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQ 192

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNP 113
           + NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRK P
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP 244

[Close]
BLAST of IVF0010779 vs. ExPASy Swiss-Prot
Match: A1XFZ7 (50S ribosomal protein L2, chloroplastic OS=Nuphar advena OX=77108 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 9.6e-44
Identity = 89/112 (79.46%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT RLPS EV LISK+CS  VGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQ 192

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNP 113
           + NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRK P
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP 244

[Close]
BLAST of IVF0010779 vs. ExPASy Swiss-Prot
Match: Q09FY3 (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.6e-43
Identity = 88/112 (78.57%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS   GQ
Sbjct: 139 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATFGQ 198

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNP 113
           + NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRKNP
Sbjct: 199 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNP 250

[Close]
BLAST of IVF0010779 vs. ExPASy TrEMBL
Match: A0A5A7SM35 (Ribosomal protein L2 (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001190 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.1e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ
Sbjct: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQ 107
           MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQ
Sbjct: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQ 106

[Close]
BLAST of IVF0010779 vs. ExPASy TrEMBL
Match: A0A4D6IUD4 (Ribosomal protein L2 OS=Tinospora cordifolia OX=285590 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.7e-49
Identity = 106/132 (80.30%), Postives = 111/132 (84.09%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ
Sbjct: 143 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 202

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNPQPLRVILH 120
           + NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRKNPQPL VIL 
Sbjct: 203 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNPQPLGVILR 262

Query: 121 L-EEVEKGINIV 132
           L EEVEKGINIV
Sbjct: 263 LEEEVEKGINIV 274

[Close]
BLAST of IVF0010779 vs. ExPASy TrEMBL
Match: A0A650F363 (Ribosomal protein L2 OS=Vachellia nilotica OX=138033 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.5e-47
Identity = 105/134 (78.36%), Postives = 110/134 (82.09%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNPQPLRVILH 120
           + NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRK PQ L VILH
Sbjct: 194 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPQLLGVILH 253

Query: 121 L-EEVEKGINIVRI 134
           L EEVEKG NIV I
Sbjct: 254 LEEEVEKGKNIVII 267

[Close]
BLAST of IVF0010779 vs. ExPASy TrEMBL
Match: A0A7T8IMF6 (Ribosomal protein L2 OS=Prunus persica OX=3760 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.5e-47
Identity = 103/134 (76.87%), Postives = 110/134 (82.09%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ
Sbjct: 131 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 190

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNPQPLRVILH 120
           + NVGVNQKS  +A S+CWLGK PVVRGVVMNPVDHPH GGEG  Q+  KNPQPL VILH
Sbjct: 191 VGNVGVNQKSLGKAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGGPQLVEKNPQPLGVILH 250

Query: 121 L-EEVEKGINIVRI 134
           L EEVEKGINIV I
Sbjct: 251 LEEEVEKGINIVII 264

[Close]
BLAST of IVF0010779 vs. ExPASy TrEMBL
Match: A0A6G5NV90 (50S ribosomal protein L2 OS=Camellia mingii OX=2547915 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.3e-47
Identity = 105/134 (78.36%), Postives = 110/134 (82.09%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQL +AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNPQPLRVILH 120
           + NVGVNQKS  RA S+ WLGK PVVRGVVMNPVDHPH GGEGRA IGRKNPQ L VILH
Sbjct: 193 VGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNPQLLGVILH 252

Query: 121 L-EEVEKGINIVRI 134
           L EEVEKGINIV I
Sbjct: 253 LEEEVEKGINIVII 266

[Close]
BLAST of IVF0010779 vs. NCBI nr
Match: KAA0031820.1 (ribosomal protein L2 [Cucumis melo var. makuwa] >TYJ97314.1 ribosomal protein L2 [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (554), Expect = 6.90e-71
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ
Sbjct: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQ 106
           MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQ
Sbjct: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQ 106

[Close]
BLAST of IVF0010779 vs. NCBI nr
Match: QHO02027.1 (50S ribosomal protein [Arachis hypogaea] >QHO07411.1 50S ribosomal protein [Arachis hypogaea])

HSP 1 Score: 203 bits (516), Expect = 9.97e-65
Identity = 105/132 (79.55%), Postives = 111/132 (84.09%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ
Sbjct: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNPQPLRVILH 120
           + NVGVNQK+  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRKNPQ L VILH
Sbjct: 61  VGNVGVNQKTLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNPQLLGVILH 120

Query: 121 LEE-VEKGINIV 131
           LEE VEKGINIV
Sbjct: 121 LEEEVEKGINIV 132

[Close]
BLAST of IVF0010779 vs. NCBI nr
Match: YP_009627433.1 (ribosomal protein L2 [Tinospora cordifolia] >QCC70833.1 ribosomal protein L2 [Tinospora cordifolia])

HSP 1 Score: 205 bits (521), Expect = 1.58e-63
Identity = 106/132 (80.30%), Postives = 111/132 (84.09%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ
Sbjct: 143 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 202

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNPQPLRVILH 120
           + NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRKNPQPL VIL 
Sbjct: 203 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNPQPLGVILR 262

Query: 121 LEE-VEKGINIV 131
           LEE VEKGINIV
Sbjct: 263 LEEEVEKGINIV 274

[Close]
BLAST of IVF0010779 vs. NCBI nr
Match: KAD7116973.1 (hypothetical protein E3N88_04241 [Mikania micrantha])

HSP 1 Score: 196 bits (497), Expect = 7.83e-62
Identity = 102/132 (77.27%), Postives = 109/132 (82.58%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GTTIHNIEITLGKGGQLA+AA  VAK IAKE K AT +LPS EV LISK+CS  VGQ
Sbjct: 1   MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKERKSATLKLPSGEVRLISKNCSATVGQ 60

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNPQPLRVILH 120
           + NVGVNQKS  RA S+ WLGK PVVRGVVMNPVDHPH GGEGR Q+  KNPQPL VILH
Sbjct: 61  VGNVGVNQKSLGRARSKRWLGKRPVVRGVVMNPVDHPHGGGEGRHQLVEKNPQPLGVILH 120

Query: 121 LE-EVEKGINIV 131
           LE EVEKGIN+V
Sbjct: 121 LEKEVEKGINMV 132

[Close]
BLAST of IVF0010779 vs. NCBI nr
Match: KAG4914348.1 (hypothetical protein JHK87_051905 [Glycine soja])

HSP 1 Score: 199 bits (505), Expect = 1.97e-61
Identity = 103/132 (78.03%), Postives = 109/132 (82.58%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLGKGGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ
Sbjct: 118 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 177

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNPQPLRVILH 120
           + NVGVNQK+  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRKNPQ L V LH
Sbjct: 178 VGNVGVNQKNLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNPQLLGVFLH 237

Query: 121 LEE-VEKGINIV 131
           LEE VEKG NIV
Sbjct: 238 LEEEVEKGRNIV 249

[Close]
BLAST of IVF0010779 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-44
Identity = 87/112 (77.68%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLG+GGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNP 113
           + NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRK P
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP 244

[Close]
BLAST of IVF0010779 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-44
Identity = 87/112 (77.68%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGKLATFRLPSREVCLISKSCSVIVGQ 60
           MP GT IHNIEITLG+GGQLA+AA  VAK IAKEGK AT +LPS EV LISK+CS  VGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  MENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQIGRKNP 113
           + NVGVNQKS  RA S+CWLGK PVVRGVVMNPVDHPH GGEGRA IGRK P
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP 244

[Close]
BLAST of IVF0010779 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-16
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGK-LATFRLPSREVCLISKSCSVIVG 60
           M  GT IHNIE+  G+G ++ +AA   AK + +  K     +LPS +   I+  C   +G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQ 107
            + N     K   +A    WLG  P VRGV MNP DHPH GGEG+++
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSK 174

[Close]
BLAST of IVF0010779 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-16
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIAKEGK-LATFRLPSREVCLISKSCSVIVG 60
           M  GT IHNIE+  G+G ++ +AA   AK + +  K     +LPS +   I+  C   +G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QMENVGVNQKSFERAESQCWLGKHPVVRGVVMNPVDHPHKGGEGRAQ 107
            + N     K   +A    WLG  P VRGV MNP DHPH GGEG+++
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSK 174

[Close]
BLAST of IVF0010779 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 67.4 bits (163), Expect = 9.9e-12
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 0 

Query: 1   MPSGTTIHNIEITLGKGGQLAKAADVVAKRIA--KEGKLATFRLPSREVCLISKSCSVIV 60
           +P G  I N+E+ +G  G LA+A+   A  IA   E      +LPS    ++  +C  ++
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 61  GQMENVGVNQKSF---------ERAESQCWLGKHPVVRGVVMNPVDHPHKGG 102
           GQ+   G  +K            +A+  CW    PVVRGV MNPV+HPH GG
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGG 215

The following BLAST results are available for this feature:
BLAST of IVF0010779 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P214341.1e-4473.1350S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi OX=4089 GN=rpl2 PE=... [more]
Q0G9F59.6e-4479.4650S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=... [more]
Q0G9H89.6e-4479.4650S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=... [more]
A1XFZ79.6e-4479.4650S ribosomal protein L2, chloroplastic OS=Nuphar advena OX=77108 GN=rpl2-A PE=3... [more]
Q09FY31.6e-4378.5750S ribosomal protein L2, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl2... [more]
BLAST of IVF0010779 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SM353.1e-53100.00Ribosomal protein L2 (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A4D6IUD42.7e-4980.30Ribosomal protein L2 OS=Tinospora cordifolia OX=285590 GN=rpl2 PE=3 SV=1[more]
A0A650F3631.5e-4778.36Ribosomal protein L2 OS=Vachellia nilotica OX=138033 GN=rpl2 PE=3 SV=1[more]
A0A7T8IMF62.5e-4776.87Ribosomal protein L2 OS=Prunus persica OX=3760 GN=rpl2 PE=4 SV=1[more]
A0A6G5NV903.3e-4778.3650S ribosomal protein L2 OS=Camellia mingii OX=2547915 GN=rpl2 PE=3 SV=1[more]
BLAST of IVF0010779 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031820.16.90e-71100.00ribosomal protein L2 [Cucumis melo var. makuwa] >TYJ97314.1 ribosomal protein L2... [more]
QHO02027.19.97e-6579.5550S ribosomal protein [Arachis hypogaea] >QHO07411.1 50S ribosomal protein [Arac... [more]
YP_009627433.11.58e-6380.30ribosomal protein L2 [Tinospora cordifolia] >QCC70833.1 ribosomal protein L2 [Ti... [more]
KAD7116973.17.83e-6277.27hypothetical protein E3N88_04241 [Mikania micrantha][more]
KAG4914348.11.97e-6178.03hypothetical protein JHK87_051905 [Glycine soja][more]
BLAST of IVF0010779 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00830.13.4e-4477.68ribosomal protein L2 [more]
ATCG01310.13.4e-4477.68ribosomal protein L2 [more]
AT2G44065.11.0e-1640.19Ribosomal protein L2 family [more]
AT2G44065.21.0e-1640.19Ribosomal protein L2 family [more]
AT3G51190.19.9e-1235.71Ribosomal protein L2 family [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 1..119
e-value: 5.5E-33
score: 125.6
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 1..112
e-value: 2.6E-35
score: 121.3
IPR014726Ribosomal protein L2, domain 3GENE3D4.10.950.10Ribosomal protein L2, domain 3coord: 62..129
e-value: 5.7E-20
score: 73.2
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..61
e-value: 3.3E-20
score: 73.7
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 1..122
NoneNo IPR availablePANTHERPTHR13691:SF42SUBFAMILY NOT NAMEDcoord: 1..122
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 84..95
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010779.1IVF0010779.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity