Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTATTAATGTCATCATTGATGATCACGGTAAAACATCTAAAAGGAATCCTAATGAAGAGGATAAACTCTTCTGGGGGATCTACTCTCAGAAAATCAGAACTACAAGATCTAAACATTCGTCTCTAATAGAAAATAACGGGAACTCATCATCTCATTCAAATATAGACGGTATGACCACCCCTGTGGAGGCCATATCAGTTGATCACTTTAAAGCGTGTACCAGTGAAGCTTCAACCTCTACAAGTCAGCAGACGAACGAGTTCCCTACTCAACTACCTGACGCTGCTGGTTCCTCAATACAAAAGTTGATGCCTCTCATACATATAGCCAAAAATCATCCCTCTAATTCTATAATTGGTGATGTTCAGAGTGGTGTTACCACTCGAAAGAAGGAAATGAGAGATTACGCCAAGATGGTCGCCAATGTATGCTATACATCCACCGTAGAACCTACAATAGTTACAGGTGCACTTACTGATGAGCACTGGCTTTTAGCTATGCAGGAGGAACTACTATAA
mRNA sequence
ATGGAATCTATTAATGTCATCATTGATGATCACGGTAAAACATCTAAAAGGAATCCTAATGAAGAGGATAAACTCTTCTGGGGGATCTACTCTCAGAAAATCAGAACTACAAGATCTAAACATTCGTCTCTAATAGAAAATAACGGGAACTCATCATCTCATTCAAATATAGACGGTATGACCACCCCTGTGGAGGCCATATCAGTTGATCACTTTAAAGCGTGTACCAGTGAAGCTTCAACCTCTACAAGTCAGCAGACGAACGAGTTCCCTACTCAACTACCTGACGCTGCTGGTTCCTCAATACAAAAGTTGATGCCTCTCATACATATAGCCAAAAATCATCCCTCTAATTCTATAATTGGTGATGTTCAGAGTGGTGTTACCACTCGAAAGAAGGAAATGAGAGATTACGCCAAGATGGTCGCCAATGTATGCTATACATCCACCGTAGAACCTACAATAGTTACAGGTGCACTTACTGATGAGCACTGGCTTTTAGCTATGCAGGAGGAACTACTATAA
Coding sequence (CDS)
ATGGAATCTATTAATGTCATCATTGATGATCACGGTAAAACATCTAAAAGGAATCCTAATGAAGAGGATAAACTCTTCTGGGGGATCTACTCTCAGAAAATCAGAACTACAAGATCTAAACATTCGTCTCTAATAGAAAATAACGGGAACTCATCATCTCATTCAAATATAGACGGTATGACCACCCCTGTGGAGGCCATATCAGTTGATCACTTTAAAGCGTGTACCAGTGAAGCTTCAACCTCTACAAGTCAGCAGACGAACGAGTTCCCTACTCAACTACCTGACGCTGCTGGTTCCTCAATACAAAAGTTGATGCCTCTCATACATATAGCCAAAAATCATCCCTCTAATTCTATAATTGGTGATGTTCAGAGTGGTGTTACCACTCGAAAGAAGGAAATGAGAGATTACGCCAAGATGGTCGCCAATGTATGCTATACATCCACCGTAGAACCTACAATAGTTACAGGTGCACTTACTGATGAGCACTGGCTTTTAGCTATGCAGGAGGAACTACTATAA
Protein sequence
MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGMTTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSIIGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL
Homology
BLAST of IVF0010765 vs. ExPASy TrEMBL
Match:
A0A5A7SQH0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00180 PE=4 SV=1)
HSP 1 Score: 343.6 bits (880), Expect = 4.9e-91
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 60
MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM
Sbjct: 4 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 63
Query: 61 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 120
TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI
Sbjct: 64 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 123
Query: 121 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL 175
IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL
Sbjct: 124 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL 177
BLAST of IVF0010765 vs. ExPASy TrEMBL
Match:
A0A5A7SVT6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G00080 PE=4 SV=1)
HSP 1 Score: 213.8 bits (543), Expect = 5.8e-52
Identity = 108/174 (62.07%), Postives = 133/174 (76.44%), Query Frame = 0
Query: 1 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 60
MES+NVIIDDH K + + +EED W +YSQK +T+ S+ SSL + NSSSHSN++ M
Sbjct: 103 MESVNVIIDDHEKIANGSIDEEDGDIWALYSQKTKTSGSEQSSLTNDKDNSSSHSNVNSM 162
Query: 61 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 120
+E SVDH TSEAS S QQTN++ +LPD AGSS+QK++ HIAKNHPS+SI
Sbjct: 163 AVLIEPTSVDHLVDSTSEASVSNCQQTNDYSVKLPDTAGSSMQKIVQPTHIAKNHPSSSI 222
Query: 121 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL 175
IGDV S +TT+KKE + Y+KMVANVCYTST+EPT VT ALTDEHW+LAMQEELL
Sbjct: 223 IGDVHSSITTQKKERKYYSKMVANVCYTSTIEPTTVTAALTDEHWILAMQEELL 276
BLAST of IVF0010765 vs. ExPASy TrEMBL
Match:
A0A5A7SWY8 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00540 PE=4 SV=1)
HSP 1 Score: 198.0 bits (502), Expect = 3.3e-47
Identity = 108/174 (62.07%), Postives = 127/174 (72.99%), Query Frame = 0
Query: 1 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 60
MESINVIID GK KR+ +EED FWG SQK +TTRS+ S L E SS HS+I+ M
Sbjct: 394 MESINVIIDALGKAPKRSLDEEDGDFWGSSSQKTKTTRSEISFLTEEKDYSSFHSDINKM 453
Query: 61 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 120
P E+ SV + C S A + Q+T E T PD+A SS+QK+M HIAKNHPS+SI
Sbjct: 454 VIPTESTSVSFSETCESGALVTACQRTTEQATNSPDSADSSMQKMMSPTHIAKNHPSSSI 513
Query: 121 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL 175
IG+V SG+TTRKKE RDYAKMVANVCYTST+EPT VT ALTDEHW+L MQ+ELL
Sbjct: 514 IGNVYSGITTRKKERRDYAKMVANVCYTSTLEPTTVTVALTDEHWILVMQKELL 567
BLAST of IVF0010765 vs. ExPASy TrEMBL
Match:
A0A5D3E3G2 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00830 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 8.2e-46
Identity = 106/174 (60.92%), Postives = 125/174 (71.84%), Query Frame = 0
Query: 1 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 60
MESINVIID GK KR+ +EED FWG SQK +TTRS+ S L E SS HS+I+ M
Sbjct: 158 MESINVIIDALGKAPKRSLDEEDGDFWGSSSQKTKTTRSEISFLTEEKDYSSFHSDINKM 217
Query: 61 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 120
P E+ SV + C S A + Q+T E T PD+ SS+QK+M HIAKNHPS+SI
Sbjct: 218 VIPTESTSVSFSETCESGALVTACQRTTEQATNSPDSTDSSMQKMMSPTHIAKNHPSSSI 277
Query: 121 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL 175
IG+V SG+TTRKKE DYAKMVANVCYTST+EPT VT ALTDEHW+L MQ+ELL
Sbjct: 278 IGNVYSGITTRKKERIDYAKMVANVCYTSTLEPTTVTVALTDEHWILVMQKELL 331
BLAST of IVF0010765 vs. ExPASy TrEMBL
Match:
A0A5D3C9E2 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00340 PE=4 SV=1)
HSP 1 Score: 180.6 bits (457), Expect = 5.5e-42
Identity = 103/164 (62.80%), Postives = 119/164 (72.56%), Query Frame = 0
Query: 1 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 60
MESINVIIDDHG T KR+ +EED L W + S+ I TT S+HS+ IE N +S SHSN+D M
Sbjct: 231 MESINVIIDDHGNTFKRSLDEEDGLVWVLNSRHIITTCSEHSAQIEENSDSPSHSNVDSM 290
Query: 61 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLP---DAAGSSIQKLMPLIHIAKNHPS 120
TPVE V HF+A SEA TSQ+T + + P D AGSSIQKL+P HIAKNH S
Sbjct: 291 VTPVEEPLVAHFEAYDSEA--LTSQKTTKCSIKQPDIADTAGSSIQKLVPPTHIAKNHSS 350
Query: 121 NSIIGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALT 162
+SIIGDV SG+ TRKKE RDY KMVANVCY STVEPT V A+T
Sbjct: 351 SSIIGDVHSGIITRKKERRDYNKMVANVCYISTVEPTTVAAAVT 392
BLAST of IVF0010765 vs. NCBI nr
Match:
KAA0032633.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23515.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 343 bits (880), Expect = 7.32e-119
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 60
MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM
Sbjct: 4 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 63
Query: 61 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 120
TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI
Sbjct: 64 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 123
Query: 121 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL 174
IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL
Sbjct: 124 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL 177
BLAST of IVF0010765 vs. NCBI nr
Match:
KAA0035372.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 213 bits (543), Expect = 1.72e-61
Identity = 108/174 (62.07%), Postives = 133/174 (76.44%), Query Frame = 0
Query: 1 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 60
MES+NVIIDDH K + + +EED W +YSQK +T+ S+ SSL + NSSSHSN++ M
Sbjct: 103 MESVNVIIDDHEKIANGSIDEEDGDIWALYSQKTKTSGSEQSSLTNDKDNSSSHSNVNSM 162
Query: 61 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 120
+E SVDH TSEAS S QQTN++ +LPD AGSS+QK++ HIAKNHPS+SI
Sbjct: 163 AVLIEPTSVDHLVDSTSEASVSNCQQTNDYSVKLPDTAGSSMQKIVQPTHIAKNHPSSSI 222
Query: 121 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL 174
IGDV S +TT+KKE + Y+KMVANVCYTST+EPT VT ALTDEHW+LAMQEELL
Sbjct: 223 IGDVHSSITTQKKERKYYSKMVANVCYTSTIEPTTVTAALTDEHWILAMQEELL 276
BLAST of IVF0010765 vs. NCBI nr
Match:
KAA0035772.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 197 bits (502), Expect = 6.58e-55
Identity = 108/174 (62.07%), Postives = 127/174 (72.99%), Query Frame = 0
Query: 1 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 60
MESINVIID GK KR+ +EED FWG SQK +TTRS+ S L E SS HS+I+ M
Sbjct: 394 MESINVIIDALGKAPKRSLDEEDGDFWGSSSQKTKTTRSEISFLTEEKDYSSFHSDINKM 453
Query: 61 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 120
P E+ SV + C S A + Q+T E T PD+A SS+QK+M HIAKNHPS+SI
Sbjct: 454 VIPTESTSVSFSETCESGALVTACQRTTEQATNSPDSADSSMQKMMSPTHIAKNHPSSSI 513
Query: 121 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL 174
IG+V SG+TTRKKE RDYAKMVANVCYTST+EPT VT ALTDEHW+L MQ+ELL
Sbjct: 514 IGNVYSGITTRKKERRDYAKMVANVCYTSTLEPTTVTVALTDEHWILVMQKELL 567
BLAST of IVF0010765 vs. NCBI nr
Match:
TYK29845.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 193 bits (490), Expect = 2.43e-53
Identity = 106/174 (60.92%), Postives = 125/174 (71.84%), Query Frame = 0
Query: 1 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 60
MESINVIID GK KR+ +EED FWG SQK +TTRS+ S L E SS HS+I+ M
Sbjct: 158 MESINVIIDALGKAPKRSLDEEDGDFWGSSSQKTKTTRSEISFLTEEKDYSSFHSDINKM 217
Query: 61 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 120
P E+ SV + C S A + Q+T E T PD+ SS+QK+M HIAKNHPS+SI
Sbjct: 218 VIPTESTSVSFSETCESGALVTACQRTTEQATNSPDSTDSSMQKMMSPTHIAKNHPSSSI 277
Query: 121 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQEELL 174
IG+V SG+TTRKKE DYAKMVANVCYTST+EPT VT ALTDEHW+L MQ+ELL
Sbjct: 278 IGNVYSGITTRKKERIDYAKMVANVCYTSTLEPTTVTVALTDEHWILVMQKELL 331
BLAST of IVF0010765 vs. NCBI nr
Match:
KAA0060524.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK00764.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 173 bits (439), Expect = 2.64e-52
Identity = 98/170 (57.65%), Postives = 107/170 (62.94%), Query Frame = 0
Query: 1 MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 60
MESINVI+DDHG TS R+P+EED+ W SQKIRTT S HSSL E N +S SHSNID +
Sbjct: 1 MESINVIVDDHGNTSNRSPDEEDRPVWVPDSQKIRTTGSDHSSLTEENSDSPSHSNIDSV 60
Query: 61 TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQLPDAAGSSIQKLMPLIHIAKNHPSNSI 120
VEA S KL+PL HI KNH S+SI
Sbjct: 61 VISVEASS-----------------------------------KLVPLTHITKNHSSSSI 120
Query: 121 IGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAMQ 170
IGDV +GV TRKKE RDYAKMV NVCYTSTVEPT VT ALT EHWLLAMQ
Sbjct: 121 IGDVHNGVITRKKERRDYAKMVVNVCYTSTVEPTTVTAALTGEHWLLAMQ 135
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SQH0 | 4.9e-91 | 100.00 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A5A7SVT6 | 5.8e-52 | 62.07 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G... | [more] |
| A0A5A7SWY8 | 3.3e-47 | 62.07 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5D3E3G2 | 8.2e-46 | 60.92 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5D3C9E2 | 5.5e-42 | 62.80 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0032633.1 | 7.32e-119 | 100.00 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23515.1 putative m... | [more] |
| KAA0035372.1 | 1.72e-61 | 62.07 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0035772.1 | 6.58e-55 | 62.07 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
| TYK29845.1 | 2.43e-53 | 60.92 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
| KAA0060524.1 | 2.64e-52 | 57.65 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK00764.1 putative m... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
