IVF0010718 (gene) Melon (IVF77) v1

Overview
NameIVF0010718
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Locationchr01: 1567820 .. 1568146 (+)
RNA-Seq ExpressionIVF0010718
SyntenyIVF0010718
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACTTTATTTGAAACTGGCACACACACCGATAATTGATTTTGCCAAAGATGATGAAAACGTGAATTCCCAACCATTTATGCATTGGAGAGACCATTTCCTATTTTGTGCGAAAGCTATTTTTAAATCACAGGCTGAAACAGGTGAAATCAAAGGACATTACTTGAATGCTACTGTAGATACATGCGAAAAAATGATGAAAAGAGCTATATTTGCCCGAGAATTGGGAGTTCCTATATGCATGACTACTAAACATGTAGATTCTTCACGAATAATTGGAACTTGGATATCTCACCTCCATGCTACAAAGAGTCTTGCTAATTAA

mRNA sequence

ATGAAACTTTATTTGAAACTGGCACACACACCGATAATTGATTTTGCCAAAGATGATGAAAACGTGAATTCCCAACCATTTATGCATTGGAGAGACCATTTCCTATTTTGTGCGAAAGCTATTTTTAAATCACAGGCTGAAACAGGTGAAATCAAAGGACATTACTTGAATGCTACTGTAGATACATGCGAAAAAATGATGAAAAGAGCTATATTTGCCCGAGAATTGGGAGTTCCTATATGCATGACTACTAAACATGTAGATTCTTCACGAATAATTGGAACTTGGATATCTCACCTCCATGCTACAAAGAGTCTTGCTAATTAA

Coding sequence (CDS)

ATGAAACTTTATTTGAAACTGGCACACACACCGATAATTGATTTTGCCAAAGATGATGAAAACGTGAATTCCCAACCATTTATGCATTGGAGAGACCATTTCCTATTTTGTGCGAAAGCTATTTTTAAATCACAGGCTGAAACAGGTGAAATCAAAGGACATTACTTGAATGCTACTGTAGATACATGCGAAAAAATGATGAAAAGAGCTATATTTGCCCGAGAATTGGGAGTTCCTATATGCATGACTACTAAACATGTAGATTCTTCACGAATAATTGGAACTTGGATATCTCACCTCCATGCTACAAAGAGTCTTGCTAATTAA

Protein sequence

MKLYLKLAHTPIIDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIFARELGVPICMTTKHVDSSRIIGTWISHLHATKSLAN
Homology
BLAST of IVF0010718 vs. ExPASy Swiss-Prot
Match: Q31669 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthospermum herbaceum OX=43444 GN=rbcL PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-31
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AIFKSQAETGEIKGHYLNAT  TCE+MMKRAIF
Sbjct: 188 LDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIF 247

Query: 73  ARELGVPICM 83
           ARELGVPI M
Sbjct: 248 ARELGVPIVM 257

BLAST of IVF0010718 vs. ExPASy Swiss-Prot
Match: P48693 (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus OX=13427 GN=rbcL PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-31
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AIFKSQAETGEIKGHYLNAT  TCE+MMKRAIF
Sbjct: 197 LDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIF 256

Query: 73  ARELGVPICM 83
           ARELGVPI M
Sbjct: 257 ARELGVPIVM 266

BLAST of IVF0010718 vs. ExPASy Swiss-Prot
Match: P48706 (Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa OX=4236 GN=rbcL PE=3 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-31
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AIFKSQAETGEIKGHYLNAT  TCE+MMKRAIF
Sbjct: 197 LDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIF 256

Query: 73  ARELGVPICM 83
           ARELGVPI M
Sbjct: 257 ARELGVPIVM 266

BLAST of IVF0010718 vs. ExPASy Swiss-Prot
Match: P28460 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Vitis aestivalis OX=3605 GN=rbcL PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-31
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AIFKSQAETGEIKGHYLNAT  TCE+MMKRAIF
Sbjct: 188 LDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIF 247

Query: 73  ARELGVPICM 83
           ARELGVPI M
Sbjct: 248 ARELGVPIVM 257

BLAST of IVF0010718 vs. ExPASy Swiss-Prot
Match: Q32042 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus officinalis OX=16906 GN=rbcL PE=3 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 9.9e-31
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AIFKSQAETGEIKGHYLNAT  TCE+MMKRA+F
Sbjct: 187 LDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAVF 246

Query: 73  ARELGVPICM 83
           ARELGVPI M
Sbjct: 247 ARELGVPIVM 256

BLAST of IVF0010718 vs. ExPASy TrEMBL
Match: A0A0Q3IYU1 (Ribulose bisphosphate carboxylase large chain OS=Brachypodium distachyon OX=15368 GN=BRADI_2g20990v3 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.6e-29
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRDHF+FCA+AI+KSQAETGEIKGHYLNATV TCE+MMKRA+F
Sbjct: 181 LDFTKDDENVNSQPFMRWRDHFVFCAEAIYKSQAETGEIKGHYLNATVGTCEEMMKRAVF 240

Query: 73  ARELGVPICMTTKHVDSSRIIGTWISH 100
           ARELGVPI +T  ++       T ++H
Sbjct: 241 ARELGVPI-VTHDYLTGGFTANTTLAH 266

BLAST of IVF0010718 vs. ExPASy TrEMBL
Match: A7BGB7 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Adenopeltis serrata OX=316826 GN=rbcL PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.6e-28
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFMHWRD FLFCA+A+FK+QAETGEIKGHYLNAT  TCE+MMKRA+F
Sbjct: 188 LDFTKDDENVNSQPFMHWRDRFLFCAEALFKAQAETGEIKGHYLNATAGTCEEMMKRAVF 247

Query: 73  ARELGVPICM 83
           ARELGVPI M
Sbjct: 248 ARELGVPIVM 257

BLAST of IVF0010718 vs. ExPASy TrEMBL
Match: A7BG78 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Argomuellera macrophylla OX=316910 GN=rbcL PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.6e-28
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFMHWRD FLFCA+AI+K+QAETGEIKGHYLNAT  TCE+MMKRA+F
Sbjct: 188 VDFTKDDENVNSQPFMHWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAVF 247

Query: 73  ARELGVPICM 83
           ARELGVPI M
Sbjct: 248 ARELGVPIIM 257

BLAST of IVF0010718 vs. ExPASy TrEMBL
Match: A0A3P6HAT8 (Ribulose bisphosphate carboxylase large chain OS=Brassica oleracea OX=3712 GN=BOLSC35T60753H PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AI+KSQAETGEIKGHYLNAT  TCE+MMKRAIF
Sbjct: 114 LDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIF 173

Query: 73  ARELGVPICMTTKHVDSSRIIGTWI 98
           ARELGVPI M       S  I  W+
Sbjct: 174 ARELGVPIVMHDYLTGDSPQILVWL 198

BLAST of IVF0010718 vs. ExPASy TrEMBL
Match: A0A3P6GJN7 (Ribulose-bisphosphate carboxylase OS=Brassica oleracea OX=3712 GN=BOLSC46T61038H PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AI+KSQAETGEIKGHYLNAT  TCE+MMKRAIF
Sbjct: 16  LDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIF 75

Query: 73  ARELGVPICMTTKHVDSSRIIGTWI 98
           ARELGVPI M       S  I  W+
Sbjct: 76  ARELGVPIIMHDYLTGDSPQILVWL 100

BLAST of IVF0010718 vs. NCBI nr
Match: ANN24273.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Lactuca serriola])

HSP 1 Score: 132 bits (332), Expect = 1.90e-36
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AIFKSQAETGEIKGHYLNAT  TCE+MMKRAIF
Sbjct: 110 LDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIF 169

Query: 73  ARELGVPICM 82
           ARELGVPI M
Sbjct: 170 ARELGVPIVM 179

BLAST of IVF0010718 vs. NCBI nr
Match: AFG24212.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Vitis yeshanensis])

HSP 1 Score: 130 bits (327), Expect = 2.19e-36
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AIFKSQAETGEIKGHYLNAT  TCE+M+KRA+F
Sbjct: 58  LDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMIKRAVF 117

Query: 73  ARELGVPICM 82
           ARELGVPI M
Sbjct: 118 ARELGVPIVM 127

BLAST of IVF0010718 vs. NCBI nr
Match: VDD26135.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 131 bits (329), Expect = 2.57e-36
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AI+KSQAETGEIKGHYLNAT  TCE+MMKRAIF
Sbjct: 82  LDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIF 141

Query: 73  ARELGVPICM 82
           ARELGVPI M
Sbjct: 142 ARELGVPIVM 151

BLAST of IVF0010718 vs. NCBI nr
Match: VDD65810.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 132 bits (333), Expect = 2.62e-36
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AI+KSQAETGEIKGHYLNAT  TCE+MMKRAIF
Sbjct: 16  LDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAIF 75

Query: 73  ARELGVPICMTTKHVDSSRIIGTWI 97
           ARELGVPI M       S  I  W+
Sbjct: 76  ARELGVPIIMHDYLTGDSPQILVWL 100

BLAST of IVF0010718 vs. NCBI nr
Match: ANN24274.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Sonchus oleraceus])

HSP 1 Score: 132 bits (332), Expect = 2.82e-36
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AIFKSQAETGEIKGHYLNAT  TCE+MMKRAIF
Sbjct: 111 LDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIF 170

Query: 73  ARELGVPICM 82
           ARELGVPI M
Sbjct: 171 ARELGVPIVM 180

BLAST of IVF0010718 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 131.3 bits (329), Expect = 4.5e-31
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 13  IDFAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIF 72
           +DF KDDENVNSQPFM WRD FLFCA+AI+KSQAETGEIKGHYLNAT  TCE+M+KRA+F
Sbjct: 197 LDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVF 256

Query: 73  ARELGVPICM 83
           ARELGVPI M
Sbjct: 257 ARELGVPIVM 266

BLAST of IVF0010718 vs. TAIR 10
Match: ATMG00280.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 124.0 bits (310), Expect = 7.3e-29
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 15 FAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIFAR 74
          F KDDENVNSQPFM WRD FLFCA+A++K+QAETG IKGHYLNAT  TCE+M+KRA+FAR
Sbjct: 31 FTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLNATAGTCEEMIKRAVFAR 90

Query: 75 ELGVPICM 83
          ELGVPI M
Sbjct: 91 ELGVPIVM 98

BLAST of IVF0010718 vs. TAIR 10
Match: AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-28
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 15 FAKDDENVNSQPFMHWRDHFLFCAKAIFKSQAETGEIKGHYLNATVDTCEKMMKRAIFAR 74
          F KDDENVNSQPFM WRD FLFCA+A++K+QAETG IKGHYLNAT  TCE+M+KRA+FAR
Sbjct: 31 FTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHYLNATPGTCEEMIKRAVFAR 90

Query: 75 ELGVPICM 83
          ELGVPI M
Sbjct: 91 ELGVPIVM 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q316697.6e-3187.14Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthospermum herbace... [more]
P486937.6e-3187.14Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus OX=13427 GN=r... [more]
P487067.6e-3187.14Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa OX=4236 GN=rbcL ... [more]
P284607.6e-3187.14Ribulose bisphosphate carboxylase large chain (Fragment) OS=Vitis aestivalis OX=... [more]
Q320429.9e-3185.71Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus officinalis O... [more]
Match NameE-valueIdentityDescription
A0A0Q3IYU19.6e-2971.26Ribulose bisphosphate carboxylase large chain OS=Brachypodium distachyon OX=1536... [more]
A7BGB71.6e-2884.29Ribulose bisphosphate carboxylase large chain (Fragment) OS=Adenopeltis serrata ... [more]
A7BG781.6e-2884.29Ribulose bisphosphate carboxylase large chain (Fragment) OS=Argomuellera macroph... [more]
A0A3P6HAT82.1e-2874.12Ribulose bisphosphate carboxylase large chain OS=Brassica oleracea OX=3712 GN=BO... [more]
A0A3P6GJN72.1e-2874.12Ribulose-bisphosphate carboxylase OS=Brassica oleracea OX=3712 GN=BOLSC46T61038H... [more]
Match NameE-valueIdentityDescription
ANN24273.11.90e-3687.14ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Lactuca ... [more]
AFG24212.12.19e-3684.29ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Vitis ye... [more]
VDD26135.12.57e-3685.71unnamed protein product [Brassica rapa][more]
VDD65810.12.62e-3674.12unnamed protein product [Brassica oleracea][more]
ANN24274.12.82e-3687.14ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Sonchus ... [more]
Match NameE-valueIdentityDescription
ATCG00490.14.5e-3182.86ribulose-bisphosphate carboxylases [more]
ATMG00280.17.3e-2979.41Ribulose bisphosphate carboxylase large chain, catalytic domain [more]
AT2G07732.11.2e-2879.41Ribulose bisphosphate carboxylase large chain, catalytic domain [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalPFAMPF00016RuBisCO_largecoord: 13..84
e-value: 3.1E-23
score: 82.5
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyGENE3D3.20.20.110coord: 8..105
e-value: 8.1E-26
score: 92.9
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilySUPERFAMILY51649RuBisCo, C-terminal domaincoord: 13..87
NoneNo IPR availablePANTHERPTHR47910RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN, CATALYTIC DOMAIN-CONTAINING PROTEINcoord: 13..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010718.2IVF0010718.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity