IVF0010667 (gene) Melon (IVF77) v1

Overview
NameIVF0010667
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D1
Locationchr04: 7685040 .. 7688216 (-)
RNA-Seq ExpressionIVF0010667
SyntenyIVF0010667
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTGTTAGGTATCTTCTTCTCTTTTTCTATTTTTGCCCTCTTTTTTTCCTCGATCTACATCCAAATGACGTTTTTCGTTTTCAAAATCTTGGTTTTCATACAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTCTTTCTACCTCTCTTTCATTAAATCTTCTTAAACCCTAGATTTACCAACTTTGCGGCTGAGGGGTTTTTAACTTCCAACTTCTCTTCTATTTTCTTCTTTGAACTTCACTGTATTGGAATTTGTACAACATTTCAGTATGTTCCCCCAGTGTACAACTCTCACTACTATTGCTTTCGTCTCATTTCCATTTCCCGACCTTTTAAAGCTAACTAAAATGTTCTCTATCCCGCTCCCATTTTTAATTTAAAAAATTAGTATTCAACTCATGGGTTGCTTAGGAGAAATTAAGTTCCTTGTCTTCTGGACGTTTGGAGGATGAGATGTTTTTCTCTGTATTGTTTTTATTTTTATTATTTTCATAATAATTTGAACTTTTGATTACTGTCTCTACTGATGCTGAATAAGCATTCTATTTCATGACATATCTGTAGATTTAAACAAATGTTTAAAATATCCTACAATTTATTCTTTCCCGTTTGATTTGATGGAATTGTTTCGTGAATTTACTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTGAAATGGAAACAAAACAAGTATTTATACTTATACAATCATCTTGAACTGTTTCTCACCTGCACTAGAATGATGTTACGTTAGTCTGATTAAACATGAACTTCTGCTGAATCCCAGCATTTTTGGACTCGGCAGCCCATATGCCATTCTTTGGTTAATTATATGTGTGTGTTTTTAATTTTGTTTTGCATAAGAGACTGCGCAATAACTGAAAGAGAAGCAACTTGTAACTTGAACTGTTCCCAGTGGTAGAAACATAGTCAATTGAGCAGTAGCAAATTATCTTTGTTTGTAGCCTTTGTCCTCCTACACTGCCTCTAACAACTTGAACTATTCTTAACCTTCCCTGGAATAGCAATAACTTAATCTTGATTAATCAAAACTTCTTCTGAACTCCATTATTTTTGGGTTCCGTATCCCATTGGCCATTCTTATATGAATTTTTACCCTTTTTATCTTTTGGTGAGAGACTATGTTACAAGTGAAGCAAAAATTCTAACCTAGGGTAATCTTCGTGCTGGTGGAGAAAACCTGGGAGCTATAAAAAAAAGAGCCTTCCGATAAAAGTTAAATCATGTTCATAAGTAGACTGTAATTACAACACATTATCTTCTATTTGAAAAACCATCGTAAAAATGTGTATGGTACACTATTAAAAATATATTCTAAAATAGATATTTTTCCTCTCAAAATATTCGTAGAAGTAGTAGTGCAGATTTTATCCTACATCTAACCCATCAGGCTGTGAATGTTTTAAAAAATAATCGTCACCCAAGCTAGTTAGGCAAAAGATAAACCAGTTTTGTTGAAAATGAAAAACGATGCTCTATAGACAAAAGGACAGTGGAGGTAAAGGTAATTTTGGGATTCCCCATTTGAATAATAGAGGAACAAACCAGGGGAGACAACCCAGCTTGGGAACTTTTTTTAGATTCTCTTGGGGGGTTGAGGCTTCTATTAGTAGCCAACCTCACAAACATCTTAACCTTCCTAGGGGTGCCCAACATCCAAACTGATTTGACTTTACAAATGCATATTTTGCTTTAGCAAGGTCTCAGAGAGTTTAGTGAAGGTGATCTTAGAGGAGAAACAATTTAATGAATCAATGAATTTTACCTCTATGTCTTGGCCAGCTTCTGATTGAAAAGTATCGATCTTTCCTATAAAGGCTATCCAACTTTCCAATTTCTCTGTGAGAAGAGCCAACAAGCATTCCACAATTATTCCCCAAGACTATCCATGGTTTTGGTTTCATCGTCGTTTCTGGTTCTAGATGGCAACCATCACTTTTTGCAACTATTTAAGAAGTAGCGCATTATTTCTTTACTTACTAAAAGAGCCAACCAATGGAAGGAAGTCCAGCTCCATTTTAATGGGTGACTTAGGATTCGATGAATTATGATTAGTTTGCATTTTGTTGTTGACAACCCCCTATACATCTTCCACTCAATGTATTTTGCTATGCTGCTGCTACTGAAACTAGTTATTTACCGGCAGAGTTTTCACGACTCATTATTTTAGTTGGTTACCTCTTTTGTTGGAGGATTTCAGTTGAGATTGTACGCAATGTTTTAAAAGGCTAAAGGCAGCCTCTTCCAAAGTTGTAAGTCTCTTTGGTTAAAAATACTTTACCAAGTATTGCTGGGCAACACTTGATAATCAGGTAAAAGTAAATATAAAAAAAAAAAAGGAAAAATCACTCTTCCCAATTTCCACCTAGACAAAAATTCTAAAATGATATCTTTAACTTTACTAATATTATTTGATTGACTTATCCCAGAAATATTATATCGTGACAAACTAATATTATTCAATAAACTATTACAAAGAGGTGTAAGTCTATGCATGCAATATGCTTGATAACCTACATTGCACTTTACCTTGTGAAATCTTGTTTTCGACTATGATACATTAATCAATGATTTGTTTTAAAAAACTCGATGAAATTTCATGAACTTAAAGTAGAAGTACGCACTCTTTTCTCTTAAAACCTAAGTATTGGTCAAGGTTAGAAGTCGCTGATGGGTTGATTTTGAGTGGTTTTCTTGTATTACTTAGGTGTCGATATCAGCATGAATACGCATTTGAAGGCTGTGAAGCTTACTCTAAAGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGTTTGTGTTCTTGCATTCTGGCCTGTACTTTATGGTCATTTTCTGTGGCAAGTCCAATTGTTTATACTGAATCATATCATTTGCTACTCATTATCAAATGTATTGCTTATGCATTTCTACACTCTACTCCAACTACAGGAAGGCCTTTGGGACGTGGACGAGGGCGCGGCCGTGGGCGTGGTCGTGGACGTGGACGCTAG

mRNA sequence

ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGCTGTGAAGCTTACTCTAAAGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGAAGGCCTTTGGGACGTGGACGAGGGCGCGGCCGTGGGCGTGGTCGTGGACGTGGACGCTAG

Coding sequence (CDS)

ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGCTGTGAAGCTTACTCTAAAGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGAGGTAACAACATCAGATATTATATCCTACCTGACAGCTTGAATCTTGAAACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGAAGGCCTTTGGGACGTGGACGAGGGCGCGGCCGTGGGCGTGGTCGTGGACGTGGACGCTAG

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYSKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Homology
[Close]
BLAST of IVF0010667 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-41
Identity = 91/114 (79.82%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.9e-41
Identity = 91/114 (79.82%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITG +              KGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRGRGRGRGRGRG 103
           RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P GRGRGRGRGRGRGRG
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114

[Close]
BLAST of IVF0010667 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.7e-28
Identity = 72/114 (63.16%), Postives = 84/114 (73.68%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITG +              K + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.7e-28
Identity = 72/114 (63.16%), Postives = 84/114 (73.68%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITG +              K + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.7e-28
Identity = 72/114 (63.16%), Postives = 84/114 (73.68%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITG +              K + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. ExPASy TrEMBL
Match: A0A6J1DVC4 (Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC111024391 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.2e-42
Identity = 98/114 (85.96%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. ExPASy TrEMBL
Match: A0A0A0LD16 (Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.2e-42
Identity = 98/114 (85.96%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. ExPASy TrEMBL
Match: A0A6I9T6Z3 (Small nuclear ribonucleoprotein Sm D1 OS=Sesamum indicum OX=4182 GN=LOC105163249 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.2e-42
Identity = 98/114 (85.96%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCE-----------AYSKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLILKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. ExPASy TrEMBL
Match: A0A1S3C0D0 (Small nuclear ribonucleoprotein Sm D1 OS=Cucumis melo OX=3656 GN=LOC103495011 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.2e-42
Identity = 98/114 (85.96%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. ExPASy TrEMBL
Match: A0A6P6B1N2 (Small nuclear ribonucleoprotein Sm D1 OS=Durio zibethinus OX=66656 GN=LOC111314217 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 97/114 (85.09%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRYYILPDS+NLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSINLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. NCBI nr
Match: XP_031113507.1 (small nuclear ribonucleoprotein SmD1a [Ipomoea triloba])

HSP 1 Score: 178 bits (451), Expect = 1.26e-55
Identity = 98/114 (85.96%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKLTPKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 103
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. NCBI nr
Match: XP_004150106.1 (small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis melo] >XP_022155676.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157762.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157763.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_038896755.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >XP_038897023.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >KGN59890.1 hypothetical protein Csa_002314 [Cucumis sativus])

HSP 1 Score: 177 bits (450), Expect = 1.78e-55
Identity = 98/114 (85.96%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 103
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. NCBI nr
Match: XP_011079832.1 (small nuclear ribonucleoprotein Sm D1-like isoform X1 [Sesamum indicum])

HSP 1 Score: 177 bits (450), Expect = 1.78e-55
Identity = 98/114 (85.96%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLILKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 103
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. NCBI nr
Match: XP_031100929.1 (small nuclear ribonucleoprotein SmD1a-like [Ipomoea triloba])

HSP 1 Score: 177 bits (449), Expect = 2.53e-55
Identity = 97/114 (85.09%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKLTPKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 103
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPMGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. NCBI nr
Match: GFP82007.1 (small nuclear ribonucleoprotein sm d1 [Phtheirospermum japonicum])

HSP 1 Score: 177 bits (448), Expect = 3.60e-55
Identity = 97/114 (85.09%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 103
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPIGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-42
Identity = 91/114 (79.82%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-42
Identity = 91/114 (79.82%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITG +              KGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 104
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of IVF0010667 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 167.9 bits (424), Expect = 4.2e-42
Identity = 91/114 (79.82%), Postives = 97/114 (85.09%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGCEAYS-----------KGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITG +              KGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRGRGRGRGRGRG 103
           RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P GRGRGRGRGRGRGRG
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114

[Close]
BLAST of IVF0010667 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 160.6 bits (405), Expect = 6.7e-40
Identity = 90/124 (72.58%), Postives = 96/124 (77.42%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT---------------------GCEAYSKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT                       +   KGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRGRGRGRG 103
           NPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P GRGRGRGRGRG
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRG 120

The following BLAST results are available for this feature:
BLAST of IVF0010667 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SSF12.6e-4179.82Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P... [more]
Q9SY095.9e-4179.82Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P... [more]
Q3ZC109.7e-2863.16Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1[more]
P623149.7e-2863.16Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=... [more]
Q4R5F69.7e-2863.16Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 P... [more]
BLAST of IVF0010667 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DVC47.2e-4285.96Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC11102... [more]
A0A0A0LD167.2e-4285.96Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900... [more]
A0A6I9T6Z37.2e-4285.96Small nuclear ribonucleoprotein Sm D1 OS=Sesamum indicum OX=4182 GN=LOC105163249... [more]
A0A1S3C0D07.2e-4285.96Small nuclear ribonucleoprotein Sm D1 OS=Cucumis melo OX=3656 GN=LOC103495011 PE... [more]
A0A6P6B1N21.2e-4185.09Small nuclear ribonucleoprotein Sm D1 OS=Durio zibethinus OX=66656 GN=LOC1113142... [more]
BLAST of IVF0010667 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031113507.11.26e-5585.96small nuclear ribonucleoprotein SmD1a [Ipomoea triloba][more]
XP_004150106.11.78e-5585.96small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTE... [more]
XP_011079832.11.78e-5585.96small nuclear ribonucleoprotein Sm D1-like isoform X1 [Sesamum indicum][more]
XP_031100929.12.53e-5585.09small nuclear ribonucleoprotein SmD1a-like [Ipomoea triloba][more]
GFP82007.13.60e-5585.09small nuclear ribonucleoprotein sm d1 [Phtheirospermum japonicum][more]
BLAST of IVF0010667 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G07590.11.9e-4279.82Small nuclear ribonucleoprotein family protein [more]
AT3G07590.21.9e-4279.82Small nuclear ribonucleoprotein family protein [more]
AT4G02840.14.2e-4279.82Small nuclear ribonucleoprotein family protein [more]
AT4G02840.26.7e-4072.58Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..59
e-value: 2.6E-5
score: 33.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..35
e-value: 4.6E-6
score: 26.2
NoneNo IPR availableGENE3D2.30.30.100coord: 36..71
e-value: 7.4E-12
score: 47.4
coord: 1..35
e-value: 8.8E-12
score: 47.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..103
NoneNo IPR availablePANTHERPTHR23338:SF53SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1coord: 1..99
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..32
score: 6.0
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..99
IPR034102Small nuclear ribonucleoprotein D1CDDcd01724Sm_D1coord: 2..82
e-value: 4.84926E-45
score: 138.897
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010667.1IVF0010667.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0006396 RNA processing
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003723 RNA binding