IVF0010647 (gene) Melon (IVF77) v1

Overview


Name	IVF0010647
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 19109226 .. 19110396 (-)
RNA-Seq Expression	IVF0010647
Synteny	IVF0010647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGAAAATAACAGAGAGATGTCGGCCAATATATTAACTCTCGGCTCTTAGAGGATAGAAGACTCCAATTATGAAATAATTTAATCAGAATGTGCCTTACTTTAAAAAAGTAAAAAAGAAGTGACAATGGCTTGTCTAAATTCTTTTGTCCTACAGCAACAGGAAGATATTATGAAATTCATCCTTGTTTACACAAAACAAAAATATGCATTTTTTATATAGTATGAAAGATTAATATTAAAAATATCAACAAGGTTAGAGAATTATTCCATACAAAATGACTTATTACTCCTTTTAAAGTTAGATGGATAGATTTCTAATAGCTCGGACAAAGTAGCCAACGAAAATTGGCAAAAGTTAAAACTTAGTTGGCATTGCACAGCAAATTTCGTGTCTGATGGACAACAACTTCAGGAATTCGCCATTTAGCAACAATACAAGCAGTAAGAAACTAAAATAATGAATTAGATAAAAAGCTAAACAATAAGAACAATTTGGGTTCGAAGTGGTTGCTCATAATGTAATTGAAATCACAATACGTTGTTGAAACCAAATGAATGTTAAAAATCCAAAAAATCTTCACCTTACCTGAATCCTCGTATACGTATTCGACGGCATAGATCCTACCACTACATCCAAAAATGAAGAGCGACAATCACCGTAGCCGTAGGCCGACCCAAAGACCTGACGGCCACTGTATTCTCAACCAGAATTGCCTTCCCTTCCAAATCCCCAAAAGGATTCCCAGTGATTACATTACACGCACCACCAGAGAGACCGCACTGAATAGAGCGAATAGGAATCGAACAACTGGAAGAAGATCCACCATAAGCCATCCAGAGAGATCGACCGCCAAGATCAATAGCGAGATGGACGGGCTTAATAAGAGAACCACGAAAAACAGTGGCCAAATACTGATTGGTGAGGAAATCTTTAGTGAGGAGGATGACGAGAGAGAAGGTTTCGCCATGGAAGAGGGTTAAGGAAGAGAGAAGAAGAAGGAAGGAAGGGAGAATGGGGAACAACCATGGGAAATTTCTGGCACAGTCGGCGAAGTTTGCCACGGATTGGAAATAGGTTAAACAGAGAGAGAGTGAAGACTTTGGAAGAGAAAATTTTTGCATGAGGGAGGAGACGGCCGGAGGCAGCGTTGACAGGAGGAATTTTAAAG

mRNA sequence

GTGGAAAATAACAGAGAGATGTCGGCCAATATATTAACTCTCGGCTCTTAGAGGATAGAAGACTCCAATTATGAAATAATTTAATCAGAATGTGCCTTACTTTAAAAAAGTAAAAAAGAAGTGACAATGGCTTGTCTAAATTCTTTTGTCCTACAGCAACAGGAAGATATTATGAAATTCATCCTTGTTTACACAAAACAAAAATATGCATTTTTTATATAGTATGAAAGATTAATATTAAAAATATCAACAAGGTTAGAGAATTATTCCATACAAAATGACTTATTACTCCTTTTAAAGTTAGATGGATAGATTTCTAATAGCTCGGACAAAGTAGCCAACGAAAATTGGCAAAAGTTAAAACTTAGTTGGCATTGCACAGCAAATTTCGTGTCTGATGGACAACAACTTCAGGAATTCGCCATTTAGCAACAATACAAGCAGTAAGAAACTAAAATAATGAATTAGATAAAAAGCTAAACAATAAGAACAATTTGGGTTCGAAGTGGTTGCTCATAATGTAATTGAAATCACAATACGTTGTTGAAACCAAATGAATGTTAAAAATCCAAAAAATCTTCACCTTACCTGAATCCTCGTATACGTATTCGACGGCATAGATCCTACCACTACATCCAAAAATGAAGAGCGACAATCACCGTAGCCGTAGGCCGACCCAAAGACCTGACGGCCACTGTATTCTCAACCAGAATTGCCTTCCCTTCCAAATCCCCAAAAGGATTCCCAGTGATTACATTACACGCACCACCAGAGAGACCGCACTGAATAGAGCGAATAGGAATCGAACAACTGGAAGAAGATCCACCATAAGCCATCCAGAGAGATCGACCGCCAAGATCAATAGCGAGATGGACGGGCTTAATAAGAGAACCACGAAAAACAGTGGCCAAATACTGATTGGTGAGGAAATCTTTAGTGAGGAGGATGACGAGAGAGAAGGTTTCGCCATGGAAGAGGGTTAAGGAAGAGAGAAGAAGAAGGAAGGAAGGGAGAATGGGGAACAACCATGGGAAATTTCTGGCACAGTCGGCGAAGTTTGCCACGGATTGGAAATAGGTTAAACAGAGAGAGAGTGAAGACTTTGGAAGAGAAAATTTTTGCATGAGGGAGGAGACGGCCGGAGGCAGCGTTGACAGGAGGAATTTTAAAG

Coding sequence (CDS)

ATGAAGAGCGACAATCACCGTAGCCGTAGGCCGACCCAAAGACCTGACGGCCACTGTATTCTCAACCAGAATTGCCTTCCCTTCCAAATCCCCAAAAGGATTCCCAGTGATTACATTACACGCACCACCAGAGAGACCGCACTGAATAGAGCGAATAGGAATCGAACAACTGGAAGAAGATCCACCATAAGCCATCCAGAGAGATCGACCGCCAAGATCAATAGCGAGATGGACGGGCTTAATAAGAGAACCACGAAAAACAGTGGCCAAATACTGATTGGTGAGGAAATCTTTAGTGAGGAGGATGACGAGAGAGAAGGTTTCGCCATGGAAGAGGGTTAA

Protein sequence

MKSDNHRSRRPTQRPDGHCILNQNCLPFQIPKRIPSDYITRTTRETALNRANRNRTTGRRSTISHPERSTAKINSEMDGLNKRTTKNSGQILIGEEIFSEEDDEREGFAMEEG

Homology

[Close]

BLAST of IVF0010647 vs. ExPASy TrEMBL
Match: A0A0A0KFQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G237605 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 88/122 (72.13%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MKSDNHRSRRPTQRPDGHCILNQNCLPFQIPKRIPSDYITR---------TTRETALNRA 60
           MKSDNHR RRP QRPDGH ILNQN LPFQIPK IPSDYITR         T+    LNRA
Sbjct: 1   MKSDNHRCRRPVQRPDGHRILNQNRLPFQIPKGIPSDYITRATNRPRSTPTSSRNTLNRA 60

Query: 61  NRNRTTGRRSTISHPERSTAKINSEMDGLNKRTTKNSGQILIGEEIFSEEDDEREGFAME 114
             NRT GRRST SHPER  AKIN EMDGLN+R  +NSG ILIGE IFSE DDEREG AME
Sbjct: 61  AGNRTAGRRSTTSHPERLAAKINGEMDGLNRRAMENSGYILIGEGIFSEGDDEREGLAME 120

The following BLAST results are available for this feature:

BLAST of IVF0010647 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFQ4	1.4e-35	72.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G237605 PE=4 SV=1	[more]

BLAST of IVF0010647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of IVF0010647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010647.1	IVF0010647.1	mRNA