IVF0010622 (gene) Melon (IVF77) v1

Overview


Name	IVF0010622
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mitochondrial intermembrane space import and assembly protein 40
Location	chr04: 21870589 .. 21871156 (-)
RNA-Seq Expression	IVF0010622
Synteny	IVF0010622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGTACTCCTAGGACTTCAGCCCACAATTCTGGCACGCTTCCTGACACGTTTTTTCAAGGTTTAGGTCGGGAAGCAAGCTCATTGGAGGGAGAACTGTGGTGTGACTTTAAACGGTACAAAAGATGGCCAACGCTTCAACGAGTGACAAACGATCGTCCGGTGTCAGAAATCACTGAAAATACACTTGCAACGAAGTAAACGAGCTAAGCTCGTGGACCTTCGGTGTTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCAGAATCGGTTTTCTCGTCCATTGGGCAAATACCAATCCTCCGACGATTTTTTCCCTTTGCTGCGTATAGGTCATAAGTCTTTTGATCTTCAGGGCTCGTACTCTGAGGACTTCAACCAACACTCCTGGCATGCTTTATGACATGTTTTCTTAAGGTCTTGGTCAGGAAGCGACCTCGTTGGAGGGAGACCTCAGGTGCGACCCAAAATGGTCTAAAAGTTGGCAAATGCTTCCAACGAGTGGCGAATGCTCGTCCAGTGTCAGAAACCACTGGAAATGCATTTCCAGCGAAGAAAATGGGCTGA

mRNA sequence

ATGGCTCGTACTCCTAGGACTTCAGCCCACAATTCTGGCACGCTTCCTGACACGTTTTTTCAAGGTTTAGGTCGGGAAGCAAGCTCATTGGAGGGAGAACTGTGGTGTGACTTTAAACGGTACAAAAGATGGCCAACGCTTCAACGAGTGACAAACGATCGTCCGGTGTCAGAAATCACTGAAAATACACTTGCAACGAAGAAGCGACCTCGTTGGAGGGAGACCTCAGGTGCGACCCAAAATGGTCTAAAAGTTGGCAAATGCTTCCAACGAGTGGCGAATGCTCGTCCAGTGTCAGAAACCACTGGAAATGCATTTCCAGCGAAGAAAATGGGCTGA

Coding sequence (CDS)

ATGGCTCGTACTCCTAGGACTTCAGCCCACAATTCTGGCACGCTTCCTGACACGTTTTTTCAAGGTTTAGGTCGGGAAGCAAGCTCATTGGAGGGAGAACTGTGGTGTGACTTTAAACGGTACAAAAGATGGCCAACGCTTCAACGAGTGACAAACGATCGTCCGGTGTCAGAAATCACTGAAAATACACTTGCAACGAAGAAGCGACCTCGTTGGAGGGAGACCTCAGGTGCGACCCAAAATGGTCTAAAAGTTGGCAAATGCTTCCAACGAGTGGCGAATGCTCGTCCAGTGTCAGAAACCACTGGAAATGCATTTCCAGCGAAGAAAATGGGCTGA

Protein sequence

MARTPRTSAHNSGTLPDTFFQGLGREASSLEGELWCDFKRYKRWPTLQRVTNDRPVSEITENTLATKKRPRWRETSGATQNGLKVGKCFQRVANARPVSETTGNAFPAKKMG

Homology

[Close]

BLAST of IVF0010622 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.6e-21
Identity = 65/131 (49.62%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 13  GTLPDTFFQGLGREASSLEGELWCDFKRYKRWPTL------------------------- 72
           G LPDTF  G+GREASSLEGELWCD KR KRWP L                         
Sbjct: 178 GMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLS 237

Query: 73  QRVTNDRP------VSEITENTLATKKRPRWRETSGATQNGLKVGKCFQRVANARPVSET 113
            R +  RP      +     +     KR RWRE  GATQNG K G+ FQRVANARPVSET
Sbjct: 238 SRTSGARPKKTPAGMPRTQFSRPGVGKRARWRENCGATQNGPKDGRSFQRVANARPVSET 297

[Close]

BLAST of IVF0010622 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.5e-13
Identity = 53/112 (47.32%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 2    ARTPRTSAHNSGTLPDTFFQGLGREASSLEGELWCDFKRYKRWPTLQRVT-NDRPVSEIT 61
            ARTPRTS H  G LPDT    L    S+  G      +    W    R T    P +  +
Sbjct: 1159 ARTPRTSTHTPGMLPDTEENEL---TSTTSGARPKKTRARLPWTQFSRPTAKSGPPTVSS 1218

Query: 62   ENTLATKKRPRWRETSGATQNGLKVGKCFQRVANARPVSETTGNAFPAKKMG 113
              ++  KKR RWR+   ATQNGL  G+CFQRVANARPVSETT NA  AK+ G
Sbjct: 1219 LCSVLVKKRARWRKNCVATQNGLADGQCFQRVANARPVSETTENALAAKQNG 1267

[Close]

BLAST of IVF0010622 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 55/138 (39.86%), Postives = 68/138 (49.28%), Query Frame = 0


Query: 4   TPRTSAHNSGTLPDTFFQGLGREASSLEGELWCDFKRYKRWPTL-------QRVTNDRPV 63
           T +TS      LPDTF QG+G++ASSLEGE  CD K+ K WP L         V N    
Sbjct: 79  TLKTSTITPCMLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKC 138

Query: 64  SEITENTLAT------------------------KKRPRWRETSGATQNGLKVGKCFQRV 111
           +   EN L++                        +K  R  E  GATQNG K G+CFQ+V
Sbjct: 139 TCREENRLSSRTSSVRPKKTRARMPRTQFSRPVVRKPTRCWEKKGATQNGPKDGQCFQQV 198

[Close]

BLAST of IVF0010622 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 2  ARTPRTSAHNSGTLPDTFFQGLGREASSLEGELWCDFKRYKRWPTL 48
          ART RTS H SG LP  F QG+GREASSLEGELW D KR+KRWP L
Sbjct: 34 ARTLRTSTHTSGMLPHMFTQGIGREASSLEGELWFDPKRFKRWPML 79

[Close]

BLAST of IVF0010622 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 39/74 (52.70%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 2   ARTPRTSAHNSGTLPDTFFQGLGREASSLEGELWCDFKRYKRWPTLQRVTNDRPVSEITE 61
           A TPRTS H    LPD F QG+GREASSLEGEL CD K YKRWP LQ           T 
Sbjct: 449 AHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPMLQ-----------TS 508

Query: 62  NTLATKKRPRWRET 76
             L++  R  W+ T
Sbjct: 509 GELSSGVRNNWKRT 511

[Close]

BLAST of IVF0010622 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.79e-26
Identity = 65/131 (49.62%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 13  GTLPDTFFQGLGREASSLEGELWCDFKRYKRWPTL------------------------- 72
           G LPDTF  G+GREASSLEGELWCD KR KRWP L                         
Sbjct: 178 GMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLS 237

Query: 73  QRVTNDRP------VSEITENTLATKKRPRWRETSGATQNGLKVGKCFQRVANARPVSET 112
            R +  RP      +     +     KR RWRE  GATQNG K G+ FQRVANARPVSET
Sbjct: 238 SRTSGARPKKTPAGMPRTQFSRPGVGKRARWRENCGATQNGPKDGRSFQRVANARPVSET 297

[Close]

BLAST of IVF0010622 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.46e-16
Identity = 53/112 (47.32%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 2    ARTPRTSAHNSGTLPDTFFQGLGREASSLEGELWCDFKRYKRWPTLQRVT-NDRPVSEIT 61
            ARTPRTS H  G LPDT    L    S+  G      +    W    R T    P +  +
Sbjct: 1159 ARTPRTSTHTPGMLPDTEENEL---TSTTSGARPKKTRARLPWTQFSRPTAKSGPPTVSS 1218

Query: 62   ENTLATKKRPRWRETSGATQNGLKVGKCFQRVANARPVSETTGNAFPAKKMG 112
              ++  KKR RWR+   ATQNGL  G+CFQRVANARPVSETT NA  AK+ G
Sbjct: 1219 LCSVLVKKRARWRKNCVATQNGLADGQCFQRVANARPVSETTENALAAKQNG 1267

[Close]

BLAST of IVF0010622 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 1.19e-15
Identity = 56/138 (40.58%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 4   TPRTSAHNSGTLPDTFFQGLGREASSLEGELWCDFKRYKRWPTLQR-------VTNDRPV 63
           T +TS      LPDTF QG+G++ASSLEGE  CD K+ K WP L         V N    
Sbjct: 79  TLKTSTITPCMLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKC 138

Query: 64  SEITENTLATK------KRPRWR------------------ETSGATQNGLKVGKCFQRV 110
           +   EN L+++      K+ R R                  E  GATQNG K G+CFQ+V
Sbjct: 139 TCREENRLSSRTSSVRPKKTRARMPRTQFSRPVVRKPTRCWEKKGATQNGPKDGQCFQQV 198

[Close]

BLAST of IVF0010622 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.42e-12
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 2  ARTPRTSAHNSGTLPDTFFQGLGREASSLEGELWCDFKRYKRWPTL 47
          ART RTS H SG LP  F QG+GREASSLEGELW D KR+KRWP L
Sbjct: 34 ARTLRTSTHTSGMLPHMFTQGIGREASSLEGELWFDPKRFKRWPML 79

[Close]

BLAST of IVF0010622 vs. NCBI nr
Match: TYK15156.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 5.25e-12
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 68  KRPRWRETSGATQNGLKVGKCFQRVANARPVSETTGNAFPAKKMG 112
           KR RWRE  GATQNG K G+ FQRVANARPVSETTGNA  AK+ G
Sbjct: 199 KRARWRENCGATQNGPKDGRSFQRVANARPVSETTGNALAAKETG 243

The following BLAST results are available for this feature:

BLAST of IVF0010622 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGB1	7.6e-21	49.62	Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo...	[more]
A0A5A7V5J2	4.5e-13	47.32	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3E5W4	2.9e-12	39.86	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V368	1.3e-09	73.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DIF8	2.3e-09	52.70	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]

BLAST of IVF0010622 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066117.1	1.79e-26	49.62	mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v...	[more]
KAA0062888.1	2.46e-16	47.32	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
KAA0035524.1	1.19e-15	40.58	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
KAA0061317.1	1.42e-12	73.91	hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142...	[more]
TYK15156.1	5.25e-12	75.56	mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v...	[more]

BLAST of IVF0010622 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010622.1	IVF0010622.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003824	catalytic activity