IVF0010602 (gene) Melon (IVF77) v1

Overview
NameIVF0010602
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGypsy/ty3 element polyprotein
Locationchr11: 16961143 .. 16961394 (-)
RNA-Seq ExpressionIVF0010602
SyntenyIVF0010602
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTCAAGGATATGATGGATATGGTCCAACTTACTGAAGATAGGATTGAGACGACTCAGTCAACAATCAATCCATATTGGAATGACTGGAAACCAATCCAGAAGCCCATGATCAAACGACCTAAAGGGATCATTAATCGCATTGTTAGTCTAGCTGAAAAGGTACCTTATCGATACGAACTCTACACCAAATCAGCTAAATCCCTCTTTTTGCAGCTGGATCGACTTAGAGCTACAGGCGAGATGTGA

mRNA sequence

ATGGGCCTCAAGGATATGATGGATATGGTCCAACTTACTGAAGATAGGATTGAGACGACTCAGTCAACAATCAATCCATATTGGAATGACTGGAAACCAATCCAGAAGCCCATGATCAAACGACCTAAAGGGATCATTAATCGCATTGTTAGTCTAGCTGAAAAGGTACCTTATCGATACGAACTCTACACCAAATCAGCTAAATCCCTCTTTTTGCAGCTGGATCGACTTAGAGCTACAGGCGAGATGTGA

Coding sequence (CDS)

ATGGGCCTCAAGGATATGATGGATATGGTCCAACTTACTGAAGATAGGATTGAGACGACTCAGTCAACAATCAATCCATATTGGAATGACTGGAAACCAATCCAGAAGCCCATGATCAAACGACCTAAAGGGATCATTAATCGCATTGTTAGTCTAGCTGAAAAGGTACCTTATCGATACGAACTCTACACCAAATCAGCTAAATCCCTCTTTTTGCAGCTGGATCGACTTAGAGCTACAGGCGAGATGTGA

Protein sequence

MGLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVPYRYELYTKSAKSLFLQLDRLRATGEM
Homology
[Close]
BLAST of IVF0010602 vs. ExPASy TrEMBL
Match: A0A5D3C0P1 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001220 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.1e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MGLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVPYRY 60
          MGLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVPYRY
Sbjct: 4  MGLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVPYRY 63

Query: 61 ELYTKSAKSLFLQLDRLRATGEM 84
          ELYTKSAKSLFLQLDRLRATGEM
Sbjct: 64 ELYTKSAKSLFLQLDRLRATGEM 86

[Close]
BLAST of IVF0010602 vs. NCBI nr
Match: TYK04915.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (435), Expect = 6.32e-54
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MGLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVPYRY 60
          MGLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVPYRY
Sbjct: 4  MGLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVPYRY 63

Query: 61 ELYTKSAKSLFLQLDRLRATGEM 83
          ELYTKSAKSLFLQLDRLRATGEM
Sbjct: 64 ELYTKSAKSLFLQLDRLRATGEM 86

[Close]
BLAST of IVF0010602 vs. NCBI nr
Match: TYK27245.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 1.69e-05
Identity = 25/56 (44.64%), Postives = 32/56 (57.14%), Query Frame = 0 

Query: 2  GLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVP 57
          GLKDMMD  +L E+++ET  +    Y  D KP  KP IK        +V+L EKVP
Sbjct: 29 GLKDMMDAARLAEEKLETACTAQGSYGKDEKPAHKPTIKNADSYTTCMVTLDEKVP 84

[Close]
BLAST of IVF0010602 vs. NCBI nr
Match: KAA0057860.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa] >TYJ98542.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 1.99e-05
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 2  GLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVP 57
          GL+DM+D  +L E+++E  +++  PY  D KP QK + K  K    +IV+LAE++P
Sbjct: 5  GLEDMVDAARLAEEKLEIARASHGPYIKDGKPNQKHVPKNSKTSSTKIVTLAERIP 60

[Close]
BLAST of IVF0010602 vs. NCBI nr
Match: TYK28460.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 4.41e-05
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 2   GLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVP 57
           GL+DMMD  +L E+++E  +++  PY  D+K  QKP  K  +    +IV+LAE++P
Sbjct: 235 GLEDMMDAARLAEEKLEIARASHGPYAKDFKSAQKPAPKNVETPSTKIVTLAERIP 290

[Close]
BLAST of IVF0010602 vs. NCBI nr
Match: KAA0038377.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 4.60e-05
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 2   GLKDMMDMVQLTEDRIETTQSTINPYWNDWKPIQKPMIKRPKGIINRIVSLAEKVP 57
           GL+DMMD  +L E+++E  +++  PY  D+K  QKP  K  +    +IV+LAE++P
Sbjct: 235 GLEDMMDAARLAEEKLEIARASHGPYAKDFKSAQKPAPKNVETPSTKIVTLAERIP 290

The following BLAST results are available for this feature:
BLAST of IVF0010602 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0010602 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C0P12.1e-39100.00Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
BLAST of IVF0010602 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK04915.16.32e-54100.00gypsy/ty3 element polyprotein [Cucumis melo var. makuwa][more]
TYK27245.11.69e-0544.64gypsy/ty3 element polyprotein [Cucumis melo var. makuwa][more]
KAA0057860.11.99e-0541.07gypsy/ty3 element polyprotein [Cucumis melo var. makuwa] >TYJ98542.1 gypsy/ty3 e... [more]
TYK28460.14.41e-0541.07gypsy/ty3 element polyprotein [Cucumis melo var. makuwa][more]
KAA0038377.14.60e-0541.07gypsy/ty3 element polyprotein [Cucumis melo var. makuwa][more]
BLAST of IVF0010602 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010602.1IVF0010602.1mRNA