IVF0010597 (gene) Melon (IVF77) v1

Overview


Name	IVF0010597
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase subunit alpha
Location	chr08: 28245908 .. 28246229 (+)
RNA-Seq Expression	IVF0010597
Synteny	IVF0010597

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAGTCCTATATGTAGGAGATGGAATTGCCCGAGTTTATGGATTGAAGGAGATTCAAGCTGAGGAAATGGTGGAATTTGCCACTAGTGTCACAGGAATAGCCTTAAATCTTGAGAATGAAAATGTAGTAATTGTGTCTTTGGTAGTGATACTGCTATTAAAGAATGAGATCTTGCCAAGCACACTGGATCGATTATGGATGTTCCGATGGGAAAGGTTATGCTCGAGCCTGTGGTCGACGCCTTAGGAGCACTCATTGATGGAAGAGGGGCTCTCAACGATTACGAGCGAAGACGTGTCGAAGTGAAAGACCCTAG

mRNA sequence

ATGGGTCGAGTCCTATATGTAGGAGATGGAATTGCCCGAGTTTATGGATTGAAGGAGATTCAAGCTGAGGAAATGGTGGAATTTGCCACTAGTGTCACAGGAATAGCCTTAAATCTTGAGAATGAAAATGTAGTAATTGTGTCTTTGGTAGTGATACTGCTATTAAAGAATGAGATCTTGCCAAGCACACTGGATCGATTATGGATGTTCCGATGGGAAAGGTTATGCTCGAGCCTGTGGGGCTCTCAACGATTACGAGCGAAGACGTGTCGAAGTGAAAGACCCTAG

Coding sequence (CDS)

ATGGGTCGAGTCCTATATGTAGGAGATGGAATTGCCCGAGTTTATGGATTGAAGGAGATTCAAGCTGAGGAAATGGTGGAATTTGCCACTAGTGTCACAGGAATAGCCTTAAATCTTGAGAATGAAAATGTAGTAATTGTGTCTTTGGTAGTGATACTGCTATTAAAGAATGAGATCTTGCCAAGCACACTGGATCGATTATGGATGTTCCGATGGGAAAGGTTATGCTCGAGCCTGTGGGGCTCTCAACGATTACGAGCGAAGACGTGTCGAAGTGAAAGACCCTAG

Protein sequence

MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIVSLVVILLLKNEILPSTLDRLWMFRWERLCSSLWGSQRLRAKTCRSERP

Homology

[Close]

BLAST of IVF0010597 vs. ExPASy Swiss-Prot
Match: P05492 (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-12
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 48
          +GRV+ VGDGIARVYGL EIQA EMVEFA+ V GIALNLENENV IV
Sbjct: 30 IGRVISVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIV 76

[Close]

BLAST of IVF0010597 vs. ExPASy Swiss-Prot
Match: Q06735 (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-12
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 48
          +GRV+ VGDGIARVYGL EIQA EMVEFA+ V GIALNLENENV IV
Sbjct: 30 IGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIV 76

[Close]

BLAST of IVF0010597 vs. ExPASy Swiss-Prot
Match: P18260 (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-12
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 48
          +GRV+ VGDGIARVYGL EIQA EMVEFA+ V GIALNLENENV IV
Sbjct: 30 IGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIV 76

[Close]

BLAST of IVF0010597 vs. ExPASy Swiss-Prot
Match: P05494 (ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-12
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 48
          +GRV+ VGDGIARVYGL EIQA EMVEFA+ V GIALNLENENV IV
Sbjct: 30 IGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIV 76

[Close]

BLAST of IVF0010597 vs. ExPASy Swiss-Prot
Match: P05495 (ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 GN=ATPA PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-12
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 48
          +GRV+ VGDGIARVYGL EIQA EMVEFA+ V GIALNLENENV IV
Sbjct: 30 IGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIV 76

[Close]

BLAST of IVF0010597 vs. ExPASy TrEMBL
Match: A0A452YPP8 (ATP-synt_ab_N domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.7e-18
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1   MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENV-VIVSLVVILLLKNEI 60
           +GRV+ VGDGIARVYGL EIQA EMVEFA+ V GIALNLENENV +++SLVVI LLK EI
Sbjct: 30  IGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGILLSLVVIPLLKKEI 89

Query: 61  LPSTLDRLWMFRWERLC 77
           L S LD LWMF  ER C
Sbjct: 90  LSSALDLLWMFLRERPC 106

[Close]

BLAST of IVF0010597 vs. ExPASy TrEMBL
Match: A0A5A7TVW3 (ATPase subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001000 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIVSLVV 52
          MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVV++  VV
Sbjct: 30 MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVMLEPVV 80

[Close]

BLAST of IVF0010597 vs. ExPASy TrEMBL
Match: A0A0A0KT56 (ATP-synt_ab_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G321490 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 55/106 (51.89%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 1   MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIVSLVVILLLKNEIL 60
           MGRV  VGDGI+RVYGLKEIQA EMVEF++ V GIALNLENENV I+       +K   L
Sbjct: 1   MGRVFSVGDGISRVYGLKEIQAGEMVEFSSGVKGIALNLENENVGIIIFGSDTAIKEGDL 60

Query: 61  PSTLDRLWMFRWERLCSSLW-----------GSQRLRAKTCRSERP 96
                 +     ERLC  +W           GS+R  AKTCRSE P
Sbjct: 61  VKRTRSIVDVLRERLCLGVWSTPWKYLLMEEGSKRSSAKTCRSESP 106

[Close]

BLAST of IVF0010597 vs. ExPASy TrEMBL
Match: A0A5A7UYQ6 (ATPase subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00140 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.9e-11
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 48
          MGRVL VGDGIARVYGLKEIQA EMV+FA+SV GIALNLENENV IV
Sbjct: 12 MGRVLSVGDGIARVYGLKEIQAGEMVKFASSVKGIALNLENENVGIV 58

[Close]

BLAST of IVF0010597 vs. ExPASy TrEMBL
Match: A0A5D3DVZ5 (ATPase subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001980 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1   MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 48
           MGRVL VGD IARVYGLKEIQAEEMVEFA+ V GIALNLENENV IV
Sbjct: 185 MGRVLSVGDRIARVYGLKEIQAEEMVEFASGVKGIALNLENENVGIV 231

[Close]

BLAST of IVF0010597 vs. NCBI nr
Match: KAA0047300.1 (ATPase subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 4.20e-20
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIVSLVV 51
          MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVV++  VV
Sbjct: 30 MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVMLEPVV 80

[Close]

BLAST of IVF0010597 vs. NCBI nr
Match: KAE8648350.1 (hypothetical protein Csa_023147 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 3.34e-17
Identity = 55/107 (51.40%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 1   MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIVSLVVILLLKN-EI 60
           MGRV  VGDGI+RVYGLKEIQA E+VEF+  V GIALNLENENV I+       +K  ++
Sbjct: 54  MGRVFSVGDGISRVYGLKEIQAREIVEFSNGVKGIALNLENENVGIIIFGSDTAIKEGDL 113

Query: 61  LPSTLDRLWMFRWERLCSSLW-----------GSQRLRAKTCRSERP 95
           +  T   + + R ERLC  +W           GS+R  AKTCRSE P
Sbjct: 114 VKRTRSIVDVLR-ERLCLGVWSTPWKYLLMEEGSKRSSAKTCRSESP 159

[Close]

BLAST of IVF0010597 vs. NCBI nr
Match: KAA0061103.1 (ATPase subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.61e-15
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 47
          MGRVL VGDGIARVYGLKEIQA EMV+FA+SV GIALNLENENV IV
Sbjct: 12 MGRVLSVGDGIARVYGLKEIQAGEMVKFASSVKGIALNLENENVGIV 58

[Close]

BLAST of IVF0010597 vs. NCBI nr
Match: KAE9605142.1 (ATP synthase subunit alpha [Lupinus albus] >KAF1889126.1 hypothetical protein Lal_00035314 [Lupinus albus])

HSP 1 Score: 72.4 bits (176), Expect = 3.93e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 47
          +GRV+ VGDGIARVYGL EIQA EMVEFA+SV GIALNLENENV IV
Sbjct: 30 IGRVVSVGDGIARVYGLNEIQAGEMVEFASSVKGIALNLENENVGIV 76

[Close]

BLAST of IVF0010597 vs. NCBI nr
Match: AFY08517.1 (ATPase subunit 1, partial [Eleusine coracana])

HSP 1 Score: 74.3 bits (181), Expect = 8.46e-14
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 47
          MGRVL VGDGIARVYGLKEIQA EMVEF++ V GIALNLENENV IV
Sbjct: 30 MGRVLSVGDGIARVYGLKEIQAGEMVEFSSGVKGIALNLENENVGIV 76

[Close]

BLAST of IVF0010597 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 48
           +GRV+ VGDGIA+VYGL EIQA EMV FA  V G+ALNLENENV IV
Sbjct: 300 IGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIV 346

[Close]

BLAST of IVF0010597 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1  MGRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 48
          +GRV+ VGDGIA+VYGL EIQA EMV FA  V G+ALNLENENV IV
Sbjct: 30 IGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIV 76

[Close]

BLAST of IVF0010597 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-09
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 2  GRVLYVGDGIARVYGLKEIQAEEMVEFATSVTGIALNLENENVVIV 48
          G VL VGDGIAR+YGL E+ A E+VEF     GIALNLE+ NV +V
Sbjct: 30 GTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESNNVGVV 75

The following BLAST results are available for this feature:

BLAST of IVF0010597 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P05492	4.0e-12	80.85	ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA P...	[more]
Q06735	5.3e-12	80.85	ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=...	[more]
P18260	5.3e-12	80.85	ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA P...	[more]
P05494	5.3e-12	80.85	ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1	[more]
P05495	5.3e-12	80.85	ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 G...	[more]

BLAST of IVF0010597 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A452YPP8	8.7e-18	74.03	ATP-synt_ab_N domain-containing protein OS=Aegilops tauschii subsp. strangulata ...	[more]
A0A5A7TVW3	1.2e-14	92.16	ATPase subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A0A0KT56	1.7e-13	51.89	ATP-synt_ab_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3214...	[more]
A0A5A7UYQ6	7.9e-11	87.23	ATPase subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3DVZ5	1.0e-10	87.23	ATPase subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of IVF0010597 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047300.1	4.20e-20	92.16	ATPase subunit 1 [Cucumis melo var. makuwa]	[more]
KAE8648350.1	3.34e-17	51.40	hypothetical protein Csa_023147 [Cucumis sativus]	[more]
KAA0061103.1	2.61e-15	87.23	ATPase subunit 1 [Cucumis melo var. makuwa]	[more]
KAE9605142.1	3.93e-14	82.98	ATP synthase subunit alpha [Lupinus albus] >KAF1889126.1 hypothetical protein La...	[more]
AFY08517.1	8.46e-14	85.11	ATPase subunit 1, partial [Eleusine coracana]	[more]

BLAST of IVF0010597 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07698.1	2.7e-11	74.47	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	2.7e-11	74.47	ATP synthase subunit 1	[more]
ATCG00120.1	5.6e-09	63.04	ATP synthase subunit alpha	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 1..48 e-value: 3.4E-10 score: 40.3
IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	GENE3D	2.40.30.20		coord: 1..58 e-value: 7.8E-19 score: 69.3
None	No IPR available	PANTHER	PTHR48082:SF2	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 1..47
None	No IPR available	PANTHER	PTHR48082	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 1..47
IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	SUPERFAMILY	50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010597.1	IVF0010597.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism