IVF0010587 (gene) Melon (IVF77) v1

Overview


Name	IVF0010587
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	UBN2_3 domain-containing protein
Location	chr11: 21066347 .. 21066613 (-)
RNA-Seq Expression	IVF0010587
Synteny	IVF0010587

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACACCTGAGAATTCAACATCCGACAGCTCTAACACCTCAGCCCCGATTACCTCCTATGCTCTTGATGCCCAATTAAACCCTTTCATGTTACACCATTCAATTATTTCAACTACCAACCTTATTTCTACACCAACGACAGGATCAAATAATTACTCATCATGGAGTAGAGCAATGATGCTTGCGTTATTTGGAAAGAACAAAGTTGGTTTCATCACTGGCGCAATCAAGAAACCTTTAGAAGGTAATCTCCTCTTAGCTTGA

mRNA sequence

ATGATGACACCTGAGAATTCAACATCCGACAGCTCTAACACCTCAGCCCCGATTACCTCCTATGCTCTTGATGCCCAATTAAACCCTTTCATGTTACACCATTCAATTATTTCAACTACCAACCTTATTTCTACACCAACGACAGGATCAAATAATTACTCATCATGGAGTAGAGCAATGATGCTTGCGTTATTTGGAAAGAACAAAGTTGGTTTCATCACTGGCGCAATCAAGAAACCTTTAGAAGGTAATCTCCTCTTAGCTTGA

Coding sequence (CDS)

ATGATGACACCTGAGAATTCAACATCCGACAGCTCTAACACCTCAGCCCCGATTACCTCCTATGCTCTTGATGCCCAATTAAACCCTTTCATGTTACACCATTCAATTATTTCAACTACCAACCTTATTTCTACACCAACGACAGGATCAAATAATTACTCATCATGGAGTAGAGCAATGATGCTTGCGTTATTTGGAAAGAACAAAGTTGGTTTCATCACTGGCGCAATCAAGAAACCTTTAGAAGGTAATCTCCTCTTAGCTTGA

Protein sequence

MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAMMLALFGKNKVGFITGAIKKPLEGNLLLA

Homology

[Close]

BLAST of IVF0010587 vs. ExPASy TrEMBL
Match: A0A5A7UHM5 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00450 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60
          MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM
Sbjct: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60

Query: 61 MLALFGKNKVGFITGAIKKPLEGNLLLA 89
          MLALFGKNKVGFITGAIKKPLEGNLLLA
Sbjct: 61 MLALFGKNKVGFITGAIKKPLEGNLLLA 88

[Close]

BLAST of IVF0010587 vs. ExPASy TrEMBL
Match: A0A5D3C350 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002490 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.3e-27
Identity = 69/88 (78.41%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60
          M T ENSTS +SNT A ITS  +DA LNPFMLHHSII TTNL+STP  GSNNYSSWSRAM
Sbjct: 1  MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM 60

Query: 61 MLALFGKNKVGFITGAIKKPLEGNLLLA 89
          MLAL GKNKVGFITG IKKP EGN LL+
Sbjct: 61 MLALSGKNKVGFITGTIKKPSEGNYLLS 88

[Close]

BLAST of IVF0010587 vs. ExPASy TrEMBL
Match: A0A5D3BW06 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00730 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60
          M TPE+ST  SS +S PITS  LDAQLN F+LHHS+I TTNL+STP  GS  YSSWSRAM
Sbjct: 1  MTTPESSTCGSSISSTPITSSKLDAQLNHFILHHSVIPTTNLVSTPRAGSRYYSSWSRAM 60

Query: 61 MLALFGKNKVGFITGAIKKPLEGNLL 87
           L L GKNK+GFIT  I+KP EG++L
Sbjct: 61 KLGLSGKNKIGFITRVIEKPSEGSIL 86

[Close]

BLAST of IVF0010587 vs. ExPASy TrEMBL
Match: A0A5A7VE66 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00250 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 41/84 (48.81%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 5  ENSTSDSSNTSAPIT--SYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAMML 64
          EN +S + +   P+T  +   DAQLNP+ +HHS+  T  +++ P TG+ NY+SWSRAM++
Sbjct: 2  ENQSSTNGSRFDPLTAANSQNDAQLNPYFIHHSLGPTAAIVTQPLTGAINYTSWSRAMLM 61

Query: 65 ALFGKNKVGFITGAIKKPLEGNLL 87
          A+ G+NK GFITG I+KP +G LL
Sbjct: 62 AISGRNKAGFITGKIQKPSDGVLL 85

[Close]

BLAST of IVF0010587 vs. ExPASy TrEMBL
Match: A0A6J1CN69 (uncharacterized protein LOC111012810 OS=Momordica charantia OX=3673 GN=LOC111012810 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-12
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 4  PENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAMMLA 63
          P    +  +  SA   + A+++QLNP+++HHS   TT L++    G++NY+SWSR+M++A
Sbjct: 13 PITQQTSVAQNSAVENTTAIESQLNPYLIHHSTAPTTILVTQQLLGASNYNSWSRSMIIA 72

Query: 64 LFGKNKVGFITGAIKKPLEGNLLLA 89
          L GKNKVGF+ G I+KP +GNLL A
Sbjct: 73 LSGKNKVGFVDGTIQKP-KGNLLAA 96

[Close]

BLAST of IVF0010587 vs. NCBI nr
Match: KAA0054478.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK14560.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (435), Expect = 8.28e-54
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60
          MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM
Sbjct: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60

Query: 61 MLALFGKNKVGFITGAIKKPLEGNLLLA 88
          MLALFGKNKVGFITGAIKKPLEGNLLLA
Sbjct: 61 MLALFGKNKVGFITGAIKKPLEGNLLLA 88

[Close]

BLAST of IVF0010587 vs. NCBI nr
Match: TYK05760.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 6.65e-37
Identity = 69/88 (78.41%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60
          M T ENSTS +SNT A ITS  +DA LNPFMLHHSII TTNL+STP  GSNNYSSWSRAM
Sbjct: 1  MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM 60

Query: 61 MLALFGKNKVGFITGAIKKPLEGNLLLA 88
          MLAL GKNKVGFITG IKKP EGN LL+
Sbjct: 61 MLALSGKNKVGFITGTIKKPSEGNYLLS 88

[Close]

BLAST of IVF0010587 vs. NCBI nr
Match: XP_031745063.1 (uncharacterized protein LOC116405242 [Cucumis sativus])

HSP 1 Score: 130 bits (326), Expect = 3.59e-36
Identity = 67/82 (81.71%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60
          M TPE+STSDSSN S PITS  LD QLNPFMLHHSI  TTNL+STP  GSNNYSSWSRAM
Sbjct: 1  MTTPESSTSDSSNRSVPITSSNLDVQLNPFMLHHSITPTTNLVSTPLAGSNNYSSWSRAM 60

Query: 61 MLALFGKNKVGFITGAIKKPLE 82
          MLAL GKNKVGFITG IKKP E
Sbjct: 61 MLALSGKNKVGFITGLIKKPSE 82

[Close]

BLAST of IVF0010587 vs. NCBI nr
Match: KAA0046893.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK03255.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 3.94e-30
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60
          M TPE+ST  SS +S PITS  LDAQLN F+LHHS+I TTNL+STP  GS  YSSWSRAM
Sbjct: 1  MTTPESSTCGSSISSTPITSSKLDAQLNHFILHHSVIPTTNLVSTPRAGSRYYSSWSRAM 60

Query: 61 MLALFGKNKVGFITGAIKKPLEGNLL 86
           L L GKNK+GFIT  I+KP EG++L
Sbjct: 61 KLGLSGKNKIGFITRVIEKPSEGSIL 86

[Close]

BLAST of IVF0010587 vs. NCBI nr
Match: XP_031739260.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402917 [Cucumis sativus])

HSP 1 Score: 116 bits (290), Expect = 8.00e-28
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 3  TPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAMML 62
          TPE+S S SSN S  ITS  LDAQLNPF+LHHSI +TTNL+STP  GS NYSSWSR MML
Sbjct: 8  TPESSMSRSSNHSVSITSSDLDAQLNPFILHHSISTTTNLVSTPLAGSKNYSSWSRVMML 67

Query: 63 ALFGKNKVGFITGAIKKPLE 82
          AL GKNKVGFITG IKKP E
Sbjct: 68 ALSGKNKVGFITGLIKKPSE 87

The following BLAST results are available for this feature:

BLAST of IVF0010587 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010587 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHM5	1.3e-39	100.00	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3C350	4.3e-27	78.41	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3BW06	1.2e-21	67.44	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7VE66	1.3e-12	48.81	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A6J1CN69	6.6e-12	47.06	uncharacterized protein LOC111012810 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of IVF0010587 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054478.1	8.28e-54	100.00	UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK14560.1 UBN2_3 d...	[more]
TYK05760.1	6.65e-37	78.41	UBN2_3 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_031745063.1	3.59e-36	81.71	uncharacterized protein LOC116405242 [Cucumis sativus]	[more]
KAA0046893.1	3.94e-30	67.44	Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]
XP_031739260.1	8.00e-28	76.25	LOW QUALITY PROTEIN: uncharacterized protein LOC116402917 [Cucumis sativus]	[more]

BLAST of IVF0010587 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 40..80 e-value: 5.4E-16 score: 58.1
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 23..84
None	No IPR available	PANTHER	PTHR37610:SF55	SUBFAMILY NOT NAMED	coord: 23..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010587.2	IVF0010587.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding