IVF0010562 (gene) Melon (IVF77) v1

Overview
NameIVF0010562
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Locationchr04: 17162856 .. 17163104 (+)
RNA-Seq ExpressionIVF0010562
SyntenyIVF0010562
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAGGCAAGAGGACGAGGCCCTTCTCGTCACCAAAAACCCAATCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAATAACGTCGTTGTGAACCTTTCAGACGATAACAACGATTTACCAGAAGACGCTTCCCCAGCCTCCGGTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACACAACCATATTAG

mRNA sequence

ATGACTAGGCAAGAGGACGAGGCCCTTCTCGTCACCAAAAACCCAATCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAATAACGTCGTTGTGAACCTTTCAGACGATAACAACGATTTACCAGAAGACGCTTCCCCAGCCTCCGGTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACACAACCATATTAG

Coding sequence (CDS)

ATGACTAGGCAAGAGGACGAGGCCCTTCTCGTCACCAAAAACCCAATCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAATAACGTCGTTGTGAACCTTTCAGACGATAACAACGATTTACCAGAAGACGCTTCCCCAGCCTCCGGTAATGATGTCGATGATCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACACAACCATATTAG

Protein sequence

MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY
Homology
BLAST of IVF0010562 vs. ExPASy TrEMBL
Match: A0A5D3BCD5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00150 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD
Sbjct: 184 MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 243

Query: 61  DLDYDPYEGLDINDPFLDTQPY 83
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 244 DLDYDPYEGLDINDPFLDTQPY 265

BLAST of IVF0010562 vs. ExPASy TrEMBL
Match: A0A5D3DW87 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVD
Sbjct: 338 MTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVD 397

Query: 61  DLDYDPYEGLDINDPFLDTQPY 83
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 398 DLDYDPYEGLDINDPFLDTQPY 419

BLAST of IVF0010562 vs. ExPASy TrEMBL
Match: A0A5A7T975 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002220 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.1e-32
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTLVGASTQQEFNSVVNNVVVNLSDDN+DLPED SPAS N+VD
Sbjct: 230 MTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVD 289

Query: 61  DLDYDPYEGLDINDPFLDTQPY 83
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 290 DLDYDPYEGLDINDPFLDTQPY 311

BLAST of IVF0010562 vs. ExPASy TrEMBL
Match: A0A5A7SR64 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.0e-32
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVD
Sbjct: 338 MTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVD 397

Query: 61  DLDYDPYEGLDINDPFLDTQPY 83
           DLDYDPY GLDINDPFLDTQPY
Sbjct: 398 DLDYDPYVGLDINDPFLDTQPY 419

BLAST of IVF0010562 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPED SPAS N+VD
Sbjct: 338 MTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVD 397

Query: 61  DLDYDPYEGLDINDPFLDTQPY 83
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 398 DLDYDPYEGLDINDPFLDTQPY 419

BLAST of IVF0010562 vs. NCBI nr
Match: KAA0058437.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ96699.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (409), Expect = 1.25e-47
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD
Sbjct: 184 MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 243

Query: 61  DLDYDPYEGLDINDPFLDTQPY 82
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 244 DLDYDPYEGLDINDPFLDTQPY 265

BLAST of IVF0010562 vs. NCBI nr
Match: KAA0038025.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (370), Expect = 3.02e-41
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTLVGASTQQEFNSVVNNVVVNLSDDN+DLPED SPAS N+VD
Sbjct: 230 MTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVD 289

Query: 61  DLDYDPYEGLDINDPFLDTQPY 82
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 290 DLDYDPYEGLDINDPFLDTQPY 311

BLAST of IVF0010562 vs. NCBI nr
Match: KAA0066358.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 4.17e-41
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVD
Sbjct: 161 MTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVD 220

Query: 61  DLDYDPYEGLDINDPFLDTQPY 82
           DLDY+PYEGLDINDPFLD QPY
Sbjct: 221 DLDYNPYEGLDINDPFLDKQPY 242

BLAST of IVF0010562 vs. NCBI nr
Match: KAA0054115.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK29405.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 5.22e-41
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GAS QQEFNSVVNNVVVNLSDDN+DL EDASPAS NDVD
Sbjct: 107 MTRQEDEAFLLTKNAVMSTLAGASIQQEFNSVVNNVVVNLSDDNDDLLEDASPASVNDVD 166

Query: 61  DLDYDPYEGLDINDPFLDTQPY 82
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 167 DLDYDPYEGLDINDPFLDTQPY 188

BLAST of IVF0010562 vs. NCBI nr
Match: TYK28077.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (375), Expect = 5.31e-41
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDNNDLPEDASPASGNDVD 60
           MTRQEDEA L+TKN +MSTL GASTQQEFNSVVNNVVVNLSDDN+DLPEDASPAS NDVD
Sbjct: 338 MTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVD 397

Query: 61  DLDYDPYEGLDINDPFLDTQPY 82
           DLDYDPYEGLDINDPFLDTQPY
Sbjct: 398 DLDYDPYEGLDINDPFLDTQPY 419

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BCD51.2e-36100.00Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5D3DW871.1e-3291.46Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 P... [more]
A0A5A7T9754.1e-3290.24Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36... [more]
A0A5A7SR647.0e-3290.24Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE... [more]
A0A5A7VIK91.2e-3189.02Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Match NameE-valueIdentityDescription
KAA0058437.11.25e-47100.00Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ96699.1 Retrotransp... [more]
KAA0038025.13.02e-4190.24Enzymatic polyprotein [Cucumis melo var. makuwa][more]
KAA0066358.14.17e-4189.02Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
KAA0054115.15.22e-4189.02Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK29405.1 Retrotransp... [more]
TYK28077.15.31e-4191.46polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010562.2IVF0010562.2mRNA