IVF0010516 (gene) Melon (IVF77) v1

Overview
NameIVF0010516
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr06: 170718 .. 171091 (+)
RNA-Seq ExpressionIVF0010516
SyntenyIVF0010516
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATTTCTCAAGTGGGTTGTTTGGTGTCAAAGTCATAAACACTTTTCATTTCATCCATGTAGTTCCGCTTCTTTCAAGAAAAATGAAGAAAGACTTACGAAAAATCGTCATTTGGGTTGGTCCAAACAAGAAAGTCATGGGATAGACATTGCTTCAGAGAAGTTAAGACTAAGCTATATATATATATAGATGCTTTTTCTCAAAAAAGAGTTAAAGTCATAAGGTTCATTGTAAGCCCCAACGTCCGAGGAATTAGCATTTTCGAGACTAGCACGCTTGTAATTACTCGACTGAGGCTATTATCCGGTCCTCTTGAATGTGGAATCCTTTTTTTCTAGTGGAATGACGAACGAACTCATATTTTATTGA

mRNA sequence

ATGGAAAATTTCTCAAGTGGGTTGTTTGGTGTCAAAGTCATAAACACTTTTCATTTCATCCATGTAGTTCCGCTTCTTTCAAGAAAAATGAAGAAAGACTTACGAAAAATCGTCATTTGGGTTGGCTATTATCCGGTCCTCTTGAATGTGGAATCCTTTTTTTCTAGTGGAATGACGAACGAACTCATATTTTATTGA

Coding sequence (CDS)

ATGGAAAATTTCTCAAGTGGGTTGTTTGGTGTCAAAGTCATAAACACTTTTCATTTCATCCATGTAGTTCCGCTTCTTTCAAGAAAAATGAAGAAAGACTTACGAAAAATCGTCATTTGGGTTGGCTATTATCCGGTCCTCTTGAATGTGGAATCCTTTTTTTCTAGTGGAATGACGAACGAACTCATATTTTATTGA

Protein sequence

MENFSSGLFGVKVINTFHFIHVVPLLSRKMKKDLRKIVIWVGYYPVLLNVESFFSSGMTNELIFY
Homology
BLAST of IVF0010516 vs. ExPASy TrEMBL
Match: A0A5A7U8J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48863G00120 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-06
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 1  MENFSSGLFGVKVINTFHFIHVVPLLSRKMKKDLRKIVIWVG 43
          M N SSGL GV+V NT +FI VVPLLSRKMKKDL +I  WVG
Sbjct: 1  MANCSSGLLGVRVRNTLNFIPVVPLLSRKMKKDLSEIAGWVG 42

BLAST of IVF0010516 vs. ExPASy TrEMBL
Match: A0A6S7M1K9 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS3205 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 1  MENFSSGLFGVKVINTFHFIHVVPLLSRKMKKDLRKIVIWVG 43
          MEN SSGL GV V NTFHFI VVPLL+ K++KDL +I  W+G
Sbjct: 1  MENCSSGLLGVIVRNTFHFIPVVPLLALKIRKDLSEIASWLG 42

BLAST of IVF0010516 vs. NCBI nr
Match: KAA0050707.1 (hypothetical protein E6C27_scaffold48863G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.71e-10
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 1  MENFSSGLFGVKVINTFHFIHVVPLLSRKMKKDLRKIVIWVG 42
          M N SSGL GV+V NT +FI VVPLLSRKMKKDL +I  WVG
Sbjct: 1  MANCSSGLLGVRVRNTLNFIPVVPLLSRKMKKDLSEIAGWVG 42

BLAST of IVF0010516 vs. NCBI nr
Match: CAB4074376.1 (unnamed protein product [Lactuca saligna] >CAB4076223.1 unnamed protein product [Lactuca saligna])

HSP 1 Score: 60.1 bits (144), Expect = 1.12e-08
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 0

Query: 1  MENFSSGLFGVKVINTFHFIHVVPLLSRKMKKDLRKIVIWVG--------YYPVLLNVES 60
          MEN SSGL GV V NTFHFI VVPLL+ K++KDL +I  W+G        +   L  V+ 
Sbjct: 1  MENCSSGLLGVIVRNTFHFIPVVPLLALKIRKDLSEIASWLGPTKKGMGLFGHCLGRVKK 60

Query: 61 FFSSGMTNELIF 64
           FS     E+ F
Sbjct: 61 VFSRKRLEEMGF 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U8J45.3e-0671.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6S7M1K91.5e-0566.67Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS3205 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0050707.11.71e-1071.43hypothetical protein E6C27_scaffold48863G00120 [Cucumis melo var. makuwa][more]
CAB4074376.11.12e-0847.22unnamed protein product [Lactuca saligna] >CAB4076223.1 unnamed protein product ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010516.1IVF0010516.1mRNA