IVF0010498 (gene) Melon (IVF77) v1

Overview


Name	IVF0010498
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr03: 9808885 .. 9809133 (+)
RNA-Seq Expression	IVF0010498
Synteny	IVF0010498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGCGAAAAGAAGTTCGAGTCTTTCAATCTGCAAATAGGAGGCGAAAAGAACACAAAGCCATCAATTGAAGAACCACCAGAATTAGAGCTCAACCATCTGAAGTATGCGTATTTGAGGAAGAATGACACTCTGCCTGTCACCATCTCCACCCACATGGATGTTGCAGAAGAAAAGGCGTTATTAAATGTGTTAAAATGCCATAAGAAGGCAACAAGATGGACCCTGGCGAACATCCAACCATAA

mRNA sequence

ATGTCTGGCGAAAAGAAGTTCGAGTCTTTCAATCTGCAAATAGGAGGCGAAAAGAACACAAAGCCATCAATTGAAGAACCACCAGAATTAGAGCTCAACCATCTGAAGTATGCGTATTTGAGGAAGAATGACACTCTGCCTGTCACCATCTCCACCCACATGGATGTTGCAGAAGAAAAGGCGTTATTAAATGTGTTAAAATGCCATAAGAAGGCAACAAGATGGACCCTGGCGAACATCCAACCATAA

Coding sequence (CDS)

ATGTCTGGCGAAAAGAAGTTCGAGTCTTTCAATCTGCAAATAGGAGGCGAAAAGAACACAAAGCCATCAATTGAAGAACCACCAGAATTAGAGCTCAACCATCTGAAGTATGCGTATTTGAGGAAGAATGACACTCTGCCTGTCACCATCTCCACCCACATGGATGTTGCAGAAGAAAAGGCGTTATTAAATGTGTTAAAATGCCATAAGAAGGCAACAAGATGGACCCTGGCGAACATCCAACCATAA

Protein sequence

MSGEKKFESFNLQIGGEKNTKPSIEEPPELELNHLKYAYLRKNDTLPVTISTHMDVAEEKALLNVLKCHKKATRWTLANIQP

Homology

[Close]

BLAST of IVF0010498 vs. ExPASy TrEMBL
Match: A0A5D3DEG6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00250 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSGEKKFESFNLQIGGEKNTKPSIEEPPELELNHLKYAYLRKNDTLPVTISTHMDVAEEK 60
          MSGEKKFESFNLQIGGEKNTKPSIEEPPELELNHLKYAYLRKNDTLPVTISTHMDVAEEK
Sbjct: 1  MSGEKKFESFNLQIGGEKNTKPSIEEPPELELNHLKYAYLRKNDTLPVTISTHMDVAEEK 60

Query: 61 ALLNVLKCHKKATRWTLANIQP 83
          ALLNVLKCHKKATRWTLANIQP
Sbjct: 61 ALLNVLKCHKKATRWTLANIQP 82

[Close]

BLAST of IVF0010498 vs. ExPASy TrEMBL
Match: A0A5A7UF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00260 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.7e-25
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1   MSGEKKFESFNLQIGGEKNTKPSIEEPPELEL----NHLKYAYLRKNDTLPVTISTHMDV 60
           +S EKKFES +LQI GEK TKPSIEEPPELEL    NHLKY YLR+NDTLPV+ISTH+DV
Sbjct: 198 VSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDTLPVSISTHLDV 257

Query: 61  AEEKALLNVLKCHKKATRWTLANIQ 82
           A+EK LLN+LK HKK   WTL +IQ
Sbjct: 258 AKEKELLNMLKRHKKEIEWTLVDIQ 282

[Close]

BLAST of IVF0010498 vs. ExPASy TrEMBL
Match: A0A5D3BCU9 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00570 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.1e-23
Identity = 60/85 (70.59%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 1   MSGEKKFESFNLQIGGEKNTKPSIEEPPELE----LNHLKYAYLRKNDTLPVTISTHMDV 60
           +SGEKKFES +LQ  GEK TK SIEEPPELE    LNHLKYAYL  NDTL + ISTH+D 
Sbjct: 97  VSGEKKFESLDLQTKGEKKTKSSIEEPPELELKPSLNHLKYAYLGGNDTLSIIISTHLDA 156

Query: 61  AEEKALLNVLKCHKKATRWTLANIQ 82
            EEK LLN+LK HKKA  WTLA+IQ
Sbjct: 157 TEEKVLLNILKLHKKANGWTLADIQ 181

[Close]

BLAST of IVF0010498 vs. ExPASy TrEMBL
Match: A0A5D3BM57 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00490 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 58/85 (68.24%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 1  MSGEKKFESFNLQIGGEKNTKPSIEEPPELEL----NHLKYAYLRKNDTLPVTISTHMDV 60
          MSGEKKFE  +LQ   EK TKPSIEEPPELEL    NHLKYAYL +NDTLPVTI  ++D 
Sbjct: 1  MSGEKKFEPLDLQTKREKKTKPSIEEPPELELKPLPNHLKYAYLGENDTLPVTIFANLDA 60

Query: 61 AEEKALLNVLKCHKKATRWTLANIQ 82
           +EKALL +LK  KK TRWTL +IQ
Sbjct: 61 TDEKALLIILKRQKKETRWTLTDIQ 85

[Close]

BLAST of IVF0010498 vs. ExPASy TrEMBL
Match: A0A5D3C0Z2 (Integrase_H2C2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00690 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.8e-19
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1   MSGEKKFESFNLQIGGEKNTKPSIEEPPELEL----NHLKYAYLRKNDTLPVTISTHMDV 60
           +SG+ KFES +LQ  GE  T+ SIEEPP+LEL    NHLKYAYLR+NDTLPV+I  H+DV
Sbjct: 158 VSGKNKFESLDLQTKGENKTQASIEEPPKLELKPLPNHLKYAYLRENDTLPVSIPAHLDV 217

Query: 61  AEEKALLNVLKCHKKATRWTLANI 81
            EEKALLN+LK HKK    TL  +
Sbjct: 218 TEEKALLNMLKRHKKECLSTLEEV 241

[Close]

BLAST of IVF0010498 vs. NCBI nr
Match: TYK21992.1 (hypothetical protein E5676_scaffold482G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 2.19e-53
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSGEKKFESFNLQIGGEKNTKPSIEEPPELELNHLKYAYLRKNDTLPVTISTHMDVAEEK 60
          MSGEKKFESFNLQIGGEKNTKPSIEEPPELELNHLKYAYLRKNDTLPVTISTHMDVAEEK
Sbjct: 1  MSGEKKFESFNLQIGGEKNTKPSIEEPPELELNHLKYAYLRKNDTLPVTISTHMDVAEEK 60

Query: 61 ALLNVLKCHKKATRWTLANIQP 82
          ALLNVLKCHKKATRWTLANIQP
Sbjct: 61 ALLNVLKCHKKATRWTLANIQP 82

[Close]

BLAST of IVF0010498 vs. NCBI nr
Match: KAA0052866.1 (uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04359.1 uncharacterized protein E5676_scaffold675G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 6.38e-32
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1   MSGEKKFESFNLQIGGEKNTKPSIEEPPELEL----NHLKYAYLRKNDTLPVTISTHMDV 60
           +S EKKFES +LQI GEK TKPSIEEPPELEL    NHLKY YLR+NDTLPV+ISTH+DV
Sbjct: 198 VSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDTLPVSISTHLDV 257

Query: 61  AEEKALLNVLKCHKKATRWTLANIQ 81
           A+EK LLN+LK HKK   WTL +IQ
Sbjct: 258 AKEKELLNMLKRHKKEIEWTLVDIQ 282

[Close]

BLAST of IVF0010498 vs. NCBI nr
Match: KAA0059789.1 (uncharacterized protein E6C27_scaffold108G00540 [Cucumis melo var. makuwa] >TYJ99801.1 uncharacterized protein E5676_scaffold896G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 9.65e-30
Identity = 58/85 (68.24%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 1  MSGEKKFESFNLQIGGEKNTKPSIEEPPELEL----NHLKYAYLRKNDTLPVTISTHMDV 60
          MSGEKKFE  +LQ   EK TKPSIEEPPELEL    NHLKYAYL +NDTLPVTI  ++D 
Sbjct: 1  MSGEKKFEPLDLQTKREKKTKPSIEEPPELELKPLPNHLKYAYLGENDTLPVTIFANLDA 60

Query: 61 AEEKALLNVLKCHKKATRWTLANIQ 81
           +EKALL +LK  KK TRWTL +IQ
Sbjct: 61 TDEKALLIILKRQKKETRWTLTDIQ 85

[Close]

BLAST of IVF0010498 vs. NCBI nr
Match: TYJ96947.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (294), Expect = 6.68e-29
Identity = 60/85 (70.59%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 1   MSGEKKFESFNLQIGGEKNTKPSIEEPPELEL----NHLKYAYLRKNDTLPVTISTHMDV 60
           +SGEKKFES +LQ  GEK TK SIEEPPELEL    NHLKYAYL  NDTL + ISTH+D 
Sbjct: 97  VSGEKKFESLDLQTKGEKKTKSSIEEPPELELKPSLNHLKYAYLGGNDTLSIIISTHLDA 156

Query: 61  AEEKALLNVLKCHKKATRWTLANIQ 81
            EEK LLN+LK HKKA  WTLA+IQ
Sbjct: 157 TEEKVLLNILKLHKKANGWTLADIQ 181

[Close]

BLAST of IVF0010498 vs. NCBI nr
Match: KAA0040570.1 (uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa] >TYK05613.1 uncharacterized protein E5676_scaffold98G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 2.30e-23
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1   MSGEKKFESFNLQIGGEKNTKPSIEEPPELEL----NHLKYAYLRKNDTLPVTISTHMDV 60
           +SG+ KFES +LQ  GE  T+ SIEEPP+LEL    NHLKYAYLR+NDTLPV+I  H+DV
Sbjct: 158 VSGKNKFESLDLQTKGENKTQASIEEPPKLELKPLPNHLKYAYLRENDTLPVSIPAHLDV 217

Query: 61  AEEKALLNVLKCHKKATRWTLANI 80
            EEKALLN+LK HKK    TL  +
Sbjct: 218 TEEKALLNMLKRHKKECLSTLEEV 241

The following BLAST results are available for this feature:

BLAST of IVF0010498 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010498 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DEG6	3.5e-39	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UF79	3.7e-25	72.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCU9	2.1e-23	70.59	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00570 PE=4...	[more]
A0A5D3BM57	1.5e-21	68.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C0Z2	6.8e-19	63.10	Integrase_H2C2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of IVF0010498 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21992.1	2.19e-53	100.00	hypothetical protein E5676_scaffold482G00250 [Cucumis melo var. makuwa]	[more]
KAA0052866.1	6.38e-32	72.94	uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04...	[more]
KAA0059789.1	9.65e-30	68.24	uncharacterized protein E6C27_scaffold108G00540 [Cucumis melo var. makuwa] >TYJ9...	[more]
TYJ96947.1	6.68e-29	70.59	integrase [Cucumis melo var. makuwa]	[more]
KAA0040570.1	2.30e-23	63.10	uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of IVF0010498 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 5..80
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 5..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010498.1	IVF0010498.1	mRNA