IVF0010493 (gene) Melon (IVF77) v1

Overview
NameIVF0010493
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationtig00000662: 164212 .. 164450 (-)
RNA-Seq ExpressionIVF0010493
SyntenyIVF0010493
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTACTATCGGGTCGGGTGAATTCAATAATAGAGGCCTGTTGGCATTCCAGCCTTCCTTCTCCTTTCAGGGCCTACCCCAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAA

mRNA sequence

ATGGGGTACTATCGGGTCGGGGCCTACCCCAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAA

Coding sequence (CDS)

ATGGGGTACTATCGGGTCGGGGCCTACCCCAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAA

Protein sequence

MGYYRVGAYPKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRGSFNGEDPST
Homology
BLAST of IVF0010493 vs. ExPASy TrEMBL
Match: A0A0A0LBC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G600000 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.4e-30
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MGYYRVGAYPKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRGSFNGEDPS 60
          MGYYRVGAYPKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRGSFNGEDPS
Sbjct: 1  MGYYRVGAYPKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRGSFNGEDPS 60

Query: 61 T 62
          T
Sbjct: 61 T 61

BLAST of IVF0010493 vs. ExPASy TrEMBL
Match: A0A6C0UA12 (Uncharacterized protein OS=Fagonia indica OX=66629 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 11 KENPVFLGREYLNRTNRPV---VCFGTKQLELGSLNWNVYYPYRGSF 55
          +EN V +GREYLNRTN PV   VCF TKQLELGS+NWNVYYPYRG F
Sbjct: 41 RENSVLIGREYLNRTNHPVDLFVCFRTKQLELGSVNWNVYYPYRGIF 87

BLAST of IVF0010493 vs. ExPASy TrEMBL
Match: C0LEB8 (ORF126 OS=Jatropha curcas OX=180498 GN=ORF126 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 8   AYPKENPVFLGREYLNRTNRPVVCFGTKQ 37
           AYPKENPV LGREYLNRTNRPV  F ++Q
Sbjct: 96  AYPKENPVLLGREYLNRTNRPVDIFASEQ 124

BLAST of IVF0010493 vs. NCBI nr
Match: QIB71948.1 (hypothetical protein [Fagonia indica])

HSP 1 Score: 78.6 bits (192), Expect = 3.79e-17
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 11 KENPVFLGREYLNRTNRPV---VCFGTKQLELGSLNWNVYYPYRGSF 54
          +EN V +GREYLNRTN PV   VCF TKQLELGS+NWNVYYPYRG F
Sbjct: 41 RENSVLIGREYLNRTNHPVDLFVCFRTKQLELGSVNWNVYYPYRGIF 87

BLAST of IVF0010493 vs. NCBI nr
Match: YP_002720156.1 (ORF126 [Jatropha curcas] >YP_002720173.1 ORF126 [Jatropha curcas] >ACN72735.1 ORF126 [Jatropha curcas] >ACN72751.1 ORF126 [Jatropha curcas])

HSP 1 Score: 52.8 bits (125), Expect = 1.04e-06
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 8   AYPKENPVFLGREYLNRTNRPVVCFGTKQ 36
           AYPKENPV LGREYLNRTNRPV  F ++Q
Sbjct: 96  AYPKENPVLLGREYLNRTNRPVDIFASEQ 124

BLAST of IVF0010493 vs. NCBI nr
Match: KAG6735404.1 (hypothetical protein POTOM_062051 [Populus tomentosa])

HSP 1 Score: 52.8 bits (125), Expect = 5.52e-06
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 8   AYPKENPVFLGREYLNRTNRPVVCFGTKQ 36
           AYPKENPV LGREYLNRTNRPV  F ++Q
Sbjct: 492 AYPKENPVLLGREYLNRTNRPVDIFASEQ 520

BLAST of IVF0010493 vs. NCBI nr
Match: PPR94748.1 (hypothetical protein GOBAR_AA25922 [Gossypium barbadense])

HSP 1 Score: 47.4 bits (111), Expect = 9.72e-05
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 0

Query: 8   AYPKENPVFLGREYLNRTNRPVVCFGTKQ 36
            YPKENPV LGREYLNR N PV  F ++Q
Sbjct: 81  TYPKENPVLLGREYLNRANHPVDIFASEQ 109

BLAST of IVF0010493 vs. NCBI nr
Match: QHQ73422.1 (hypothetical protein [Allium tuberosum] >QHQ73441.1 hypothetical protein [Allium tuberosum])

HSP 1 Score: 47.4 bits (111), Expect = 1.52e-04
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 0

Query: 22  LNRTNR--PVVCFGTKQLELGSLNWNVYYPYRGSFN 55
           +NRTN     +CFGTKQLELGS+N N+YYPY  S N
Sbjct: 102 VNRTNHLHGYLCFGTKQLELGSVNRNMYYPYGRSSN 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LBC96.4e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G600000 PE=4 SV=1[more]
A0A6C0UA123.5e-1276.60Uncharacterized protein OS=Fagonia indica OX=66629 PE=4 SV=1[more]
C0LEB82.7e-0479.31ORF126 OS=Jatropha curcas OX=180498 GN=ORF126 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
QIB71948.13.79e-1776.60hypothetical protein [Fagonia indica][more]
YP_002720156.11.04e-0679.31ORF126 [Jatropha curcas] >YP_002720173.1 ORF126 [Jatropha curcas] >ACN72735.1 OR... [more]
KAG6735404.15.52e-0679.31hypothetical protein POTOM_062051 [Populus tomentosa][more]
PPR94748.19.72e-0568.97hypothetical protein GOBAR_AA25922 [Gossypium barbadense][more]
QHQ73422.11.52e-0463.89hypothetical protein [Allium tuberosum] >QHQ73441.1 hypothetical protein [Allium... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010493.1IVF0010493.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast