IVF0010461 (gene) Melon (IVF77) v1

Overview


Name	IVF0010461
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11
Location	chr04: 23017488 .. 23021110 (-)
RNA-Seq Expression	IVF0010461
Synteny	IVF0010461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAACTCAACCTTCTTTGTTCTTCTTCTCCTTCGTCTTCTTTCAAGAAGGCAGCTTTCCTCTTCCATTACTGCAAAACCCAGAGCTCAAAGAGCAGCTTCACAAAGGACACCGAAAGCCATGAATGCCCCCGACAGATACGAGCGCTTCGTCGTCCCAGAGGGCACCAAAAAGTAGCTTCACAAACTCTACTTATTTCTCTCTATTCAAACCAATTTTCTCAGTTTCTAATCTTTTTTCCCTCCTCTCTAGGGTCTCATACGAGAGAGACACGAAGATCATTAATGCGGCGTCGTTTACCATTGAAAGAGAGGAACATACAATTGGAAACATCTTGCGCATGTAATGACTCTTTTGAAAATTTTTAGATTACTGCTTGAAATTTGTTTAAGTGGAGTTTGTTATGGGGGTTTTGTTTTTTTTTCGACGAACAGGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCATCCTTTGCAGTATAAAATTATCGTCCGGGTCAGTTCATTTTCCACTTGTTTTCGGGTTTTGTAATTTGAAATAGGGCATTAAGGGAGCTTTTGAAATTCTGGGTTTTATTATCCCTGTTCTGTTTCTTAGTGCTTGTTTTGATTGGATGAAGGATTTTAGGATTCTGCTCTAGTTTAAGCTGTTGGATTTAGTAGTAGCCGGTTTTATGTTCAAATTATTTCATTCATATTTCATCCCCGATGAGGGTTGATATTTCACATGTTGAATCTTGTGCTTATCAATGAGCTGACATGAACGAGTGTTAAAGATGTATTTGATCAAGATTTTGAGTTCAGGAGTGACTAACGAATTTCTCATTTCAACCTATGTTCTATTTCTTGGTTTGTAATTTATTGAAGTTAGAAACCTCTTGGCTTTGATTCAAAGGGCTGAAGCTCGAGCTAAAAAAGCTATGTAACTTGGTTTACCTTTGCCCTTAGGACCACCATGAGGATAATTGTTTTTTATTAGTAATAAGGCCATTGAGCTTGTCAGTAGGAGTTTATCTTAAATAGAGTGAGTGGGGAGGAAGGAGGCAAAGATTTAGTTTGCATAGGCTTGGCCGCTTGGGTGAGAGTATTCTAGAGGGGAGGTCCCAAAATACATTGAGTATTAGGAGAGTCATTTCGGTTCATCACCCTTTATATATATTTCAATATCATTTTAGTACTTTGGTTCACTTTTTGAGGGAGACGAGGGCAACTGTTTTCAAAAGCCCTTGTCCCCTAACTTGACTGCGCATGTTCTTCTATTGAGAACATGGTTCAATGGGGTTTCAACAAGATTATGTTGACCGACTTTTCTTATAGTCAGGTGTGAAGCAACTTCTTACATTCTTTTAATTAATCAAAAAATGCTTGTGGTTGTGGTGCAAAAATGTAATTTCGTGTATCTCAAATTTTAGAAACGGTTTTTCATGTTGTTTGGAACCATTAGAATATCAAAATCTGGAAAATGAAACATTTGAAGTCGATTAGCTCCTTGGTTCTTGATCATTGTAGTTTTTTCTTGCCTCAAGTTAATCTTACCTCTCTTACTGCATTGTGGTGGATTGGCTACTTACAGTTTTCGTACAAAGTGTTTGGTCCTGCTGAATATTACCTACAGATGGAATTGATCAGTCTCTGATATGTTGTGTATCATACATAAGTAACAAAGGAACCTGAAGTGTCGTTTAAGAAAGGAGACAAGACGATGAATTTAACATGTCTAGCCAATCTACCTTACATGTTTGATGGAGTTCTTTATCGTACGATGGATCAATGTTTTAATATGGCTCTATGAACCATTGTGTTTGCCTTTACGTTCTTGGACCCATCACCGTTTCAAGATATTTTGTTTAACTTTAACTTGATGTGATTTTATTTGTCTTTTGGTTTTGTTATAAATTTTCAGTGAACTACCAACAGGTTGGTTTTTCGCCTTCTTGGCATTTTAGTACAAAACGTATTTGGTACTCCATGAACAGAAGTTGCATTTGAATGATTTCTCTTAAACATCCAGAGGATGGATTTTTTTTTTTTTCTTTTCATCCTAAATACTCGTCTTGATATTTTCTTCTGTTCCTGTTGGGTTGATATGTATTGGGGGTTATCTTCCACAAACTAATTATTACTGCTCTTCAGATCCATACCACTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGAATTAGCCACTCTGTCTCTAAACTTAGTTTCAAAATCATGCAATTTAGCTAGTAAATATTCTCAGTGAAAAGTAAAGTGCTGTTGATTGGCTTGTTGGGGATAGCCACCATGGATTGAATCATTGACCTCTTGATTCGTTATTGAGACTATGGCTAACCCATGATGATTCACTCACAAATATAAAATTAAATAAAATAAAAACTCAACTAAATGTGGTCTATTGTGGATGACAGTGGAGGTGGAGGGAATGAGCTTACTCAAATTTTAACCGAGTCCGTGAACAATAAGTCTTGTTTGAGTTTTGACAACGTTTGGTTTTTGAGAAATGTGCTTGTTCTCTCATTCTCTTTCTACCATGGTTTTCATCGATCCCAAAAACAAGTTTTTTTATAAATTACTTTTTTTAGTTTTCAAAACTTGCCTTGTATTACAAAAACACTCTTTAAAAGTAGACTACTGAACAAATAAACCAATATGTAAAAAATGGTGATTATAAGCTTATTTTTCAAAAACCAAAACCCCAAAATTAAATGCTATAAAATGTAGCCTTAACAAATGATGCTTGGATTCTCATTCCCACATTTCAAATTCCATCCCTTTTTCCCTGAATCTCATCAATTGACCATAGTTATTTAACAGTTTGATATTTAGATCAAGGATGATTACTGATGTTTACATAATTATGATACTGTAAATAATGATGGACTGTCTTCACTCTTACAAGTCAATCAATAACTGTCCTTTAAAACACTGTAAATCTCTCCACAACCTCTAAACCTGATTGATTGGCTTGTTGGGGATGCAACTTCGGACTTCTCGAAGTTAGGGACTTGAAACTGAGGCATGCTTCGAAACTTCTGCAACCTTATTTGAGCAGGATCCGTTTTCTATGTTGTTCAACGGTATCCTTGAGTTATGAAATGATTTGAAACTTCTTCCTCGCAGGCTGAGTTCGCTAAGCTCTCAAGGGACTACTGATTTGGTTTTGAAAAGTTTGGTGGAGCTCAATACAAAATGCAGGTACAGGACAATGAGTTACTGACATGAAATGGATTTCCGAGAACTTTGTTTGTTCTCTTTAAGGCTGCTGAAACCATCTTGTAACTTGCTCAACTTTTGTTGTATGACAATGCATCTAAATTATTTTTTTTTTTTTGTCTCAGCACACTTCATGTTTGTGTTAGTAGATATCCTTTTGAAAGTTTCAGTTTGATCGGTGTACTTGCTCAAATTTATTAATATTACATTTTGATGGGTGTTAGATCTCCAATATATCAAGCAGGTGATTTTTTTTTTCTTTTCATGTCATTGCCTCCTAAGAGTGGGTAGTAGAAAGACATAATTTTACCTTATATGAATAGAATGGTCG

mRNA sequence

CAAAAAACTCAACCTTCTTTGTTCTTCTTCTCCTTCGTCTTCTTTCAAGAAGGCAGCTTTCCTCTTCCATTACTGCAAAACCCAGAGCTCAAAGAGCAGCTTCACAAAGGACACCGAAAGCCATGAATGCCCCCGACAGATACGAGCGCTTCGTCGTCCCAGAGGGCACCAAAAAGGTCTCATACGAGAGAGACACGAAGATCATTAATGCGGCGTCGTTTACCATTGAAAGAGAGGAACATACAATTGGAAACATCTTGCGCATGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCATCCTTTGCAGTATAAAATTATCGTCCGGATCCATACCACTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGCTGAGTTCGCTAAGCTCTCAAGGGACTACTGATTTGGTTTTGAAAAGTTTGGTGGAGCTCAATACAAAATGCAGGTACAGGACAATGAGTTACTGACATGAAATGGATTTCCGAGAACTTTGTTTGTTCTCTTTAAGGCTGCTGAAACCATCTTGTAACTTGCTCAACTTTTGTTGTATGACAATGCATCTAAATTATTTTTTTTTTTTTGTCTCAGCACACTTCATGTTTGTGTTAGTAGATATCCTTTTGAAAGTTTCAGTTTGATCGGTGTACTTGCTCAAATTTATTAATATTACATTTTGATGGGTGTTAGATCTCCAATATATCAAGCAGGTGATTTTTTTTTTCTTTTCATGTCATTGCCTCCTAAGAGTGGGTAGTAGAAAGACATAATTTTACCTTATATGAATAGAATGGTCG

Coding sequence (CDS)

ATGAATGCCCCCGACAGATACGAGCGCTTCGTCGTCCCAGAGGGCACCAAAAAGGTCTCATACGAGAGAGACACGAAGATCATTAATGCGGCGTCGTTTACCATTGAAAGAGAGGAACATACAATTGGAAACATCTTGCGCATGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCATCCTTTGCAGTATAAAATTATCGTCCGGATCCATACCACTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGCTGAGTTCGCTAAGCTCTCAAGGGACTACTGA

Protein sequence

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY

Homology

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BLAST of IVF0010461 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 117
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+LKN FEAE AK S  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

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BLAST of IVF0010461 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-27
Identity = 53/111 (47.75%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAK 112
           Y++PHPL++ + +RI T + ++P++   +++  L +E   L+N+F  +  K
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQK 111

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BLAST of IVF0010461 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAF 106
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105

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BLAST of IVF0010461 vs. ExPASy Swiss-Prot
Match: Q9VJE4 (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 GN=Rpb11 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK+  E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 107
           YK+PHPL++K ++RI TT+  SP +A+  AI DL  EL   +  F+
Sbjct: 61  YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106

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BLAST of IVF0010461 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAF 106
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105

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BLAST of IVF0010461 vs. ExPASy TrEMBL
Match: A0A1S3CG10 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucumis melo OX=3656 GN=LOC103500319 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.3e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

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BLAST of IVF0010461 vs. ExPASy TrEMBL
Match: A0A0A0LCD5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of IVF0010461 vs. ExPASy TrEMBL
Match: A0A6J1DE90 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Momordica charantia OX=3673 GN=LOC111020248 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 117
           YKLPHPL+YKII+RIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAE AK SRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]

BLAST of IVF0010461 vs. ExPASy TrEMBL
Match: A0A6J1GBY1 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111452748 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 117
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+N FEAEFAK SRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]

BLAST of IVF0010461 vs. ExPASy TrEMBL
Match: A0A1S5R4J3 (DNA-directed RNA polymerase OS=Hevea brasiliensis subsp. brasiliensis OX=187338 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.9e-57
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 117
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAE AK S+DY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSQDY 116

[Close]

BLAST of IVF0010461 vs. NCBI nr
Match: XP_008461807.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo])

HSP 1 Score: 236 bits (603), Expect = 1.50e-78
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]

BLAST of IVF0010461 vs. NCBI nr
Match: XP_011651771.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus] >XP_038903613.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Benincasa hispida] >KGN58584.1 hypothetical protein Csa_002674 [Cucumis sativus])

HSP 1 Score: 235 bits (599), Expect = 6.10e-78
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of IVF0010461 vs. NCBI nr
Match: XP_022152550.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia])

HSP 1 Score: 231 bits (588), Expect = 2.91e-76
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116
           YKLPHPL+YKII+RIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAE AK SRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]

BLAST of IVF0010461 vs. NCBI nr
Match: XP_022949378.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_023525451.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita pepo subsp. pepo] >KAG6606882.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231 bits (588), Expect = 2.91e-76
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+N FEAEFAK SRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]

BLAST of IVF0010461 vs. NCBI nr
Match: XP_021645507.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Hevea brasiliensis] >ANG56495.1 DNA-directed RNA polymerase [Hevea brasiliensis subsp. brasiliensis])

HSP 1 Score: 229 bits (585), Expect = 8.34e-76
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAE AK S+DY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSQDY 116

[Close]

BLAST of IVF0010461 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 213.4 bits (542), Expect = 9.8e-56
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 117
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+LKN FEAE AK S  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of IVF0010461 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 197.6 bits (501), Expect = 5.5e-51
Identity = 102/146 (69.86%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVR------------------------------IHTTSQSSPMQAYNQA 117
           Y+LPHPL+YKIIVR                              IHTTSQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

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BLAST of IVF0010461 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-08
Identity = 25/84 (29.76%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 28  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
           ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +
Sbjct: 9   VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 68

Query: 88  NQAINDLDKELDHLKNAFEAEFAK 112
             A  +L +   H+++ F+   A+
Sbjct: 69  KDACQELMQMNRHVRSVFDKAVAE 91

[Close]

BLAST of IVF0010461 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-08
Identity = 25/84 (29.76%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 28  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
           ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +
Sbjct: 9   VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 68

Query: 88  NQAINDLDKELDHLKNAFEAEFAK 112
             A  +L +   H+++ F+   A+
Sbjct: 69  KDACQELMQMNRHVRSVFDKAVAE 91

The following BLAST results are available for this feature:

BLAST of IVF0010461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	1.4e-54	87.93	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q86JJ5	2.4e-27	47.75	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
Q32P79	1.6e-26	52.38	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
Q9VJE4	1.6e-26	52.83	DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 ...	[more]
P52435	1.6e-26	52.38	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]

BLAST of IVF0010461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CG10	7.3e-59	100.00	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0LCD5	2.1e-58	99.14	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810...	[more]
A0A6J1DE90	4.0e-57	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Momordica charantia OX=3...	[more]
A0A6J1GBY1	4.0e-57	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita moschata OX=36...	[more]
A0A1S5R4J3	8.9e-57	95.69	DNA-directed RNA polymerase OS=Hevea brasiliensis subsp. brasiliensis OX=187338 ...	[more]

BLAST of IVF0010461 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461807.1	1.50e-78	100.00	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]	[more]
XP_011651771.1	6.10e-78	99.14	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus...	[more]
XP_022152550.1	2.91e-76	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia]	[more]
XP_022949378.1	2.91e-76	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_02...	[more]
XP_021645507.1	8.34e-76	95.69	DNA-directed RNA polymerases II, IV and V subunit 11 [Hevea brasiliensis] >ANG56...	[more]

BLAST of IVF0010461 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	9.8e-56	87.93	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	5.5e-51	69.86	DNA-directed RNA polymerase, RBP11-like	[more]
AT2G29540.1	4.4e-08	29.76	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	4.4e-08	29.76	RNApolymerase 14 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..111
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..111
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 1..111
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 31..103 e-value: 5.1E-25 score: 87.1
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..114 e-value: 5.3E-48 score: 163.5
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..111
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 35..66
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 13..105 e-value: 3.52118E-50 score: 152.361

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010461.1	IVF0010461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity