IVF0010459 (gene) Melon (IVF77) v1

Overview


Name	IVF0010459
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	40S ribosomal protein S13-like
Location	chr12: 5214087 .. 5214242 (-)
RNA-Seq Expression	IVF0010459
Synteny	IVF0010459

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTACTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA

mRNA sequence

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTACTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA

Coding sequence (CDS)

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTACTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA

Protein sequence

MCVFLLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS

Homology

[Close]

BLAST of IVF0010459 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-15
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 5   LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GL PEIPEDLYHLIKK VSIRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of IVF0010459 vs. ExPASy Swiss-Prot
Match: P62299 (40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-15
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 3   VFLLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
           V +L +KG+ PEIPEDLYHLIKK V+IRKHLERNRKDKDSK+RLILV+S
Sbjct: 72  VRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVES 120

[Close]

BLAST of IVF0010459 vs. ExPASy Swiss-Prot
Match: P62300 (40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-15
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 3   VFLLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
           V +L +KG+ PEIPEDLYHLIKK V+IRKHLERNRKDKDSK+RLILV+S
Sbjct: 72  VRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVES 120

[Close]

BLAST of IVF0010459 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-15
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 5   LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GL PEIPEDLYHLIKK V+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of IVF0010459 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-15
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 5   LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GL PEIPEDLYHLIKK V+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of IVF0010459 vs. ExPASy TrEMBL
Match: A0A5A7U9F0 (Putative ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001980 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MCVFLLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLI 48
          MCVFLLLSKGL PEIPEDLYHLIKKVVSIRKHLERNRKDKDSK + +
Sbjct: 1  MCVFLLLSKGLAPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKAKFV 47

[Close]

BLAST of IVF0010459 vs. ExPASy TrEMBL
Match: A0A5A7UDU2 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003190 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5  LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
          +L + GLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of IVF0010459 vs. ExPASy TrEMBL
Match: A0A5A7V1J4 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00910 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.4e-14
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 5  LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
          +L + GLTPEIPEDLYHLIKK VSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLTPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of IVF0010459 vs. ExPASy TrEMBL
Match: A0A5A7TK12 (40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00500 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.2e-14
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1   MCVFLLL--SKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
           +C+ ++L  S GL PEIPEDLYHLIKK VSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 62  VCIGVILRDSHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 114

[Close]

BLAST of IVF0010459 vs. ExPASy TrEMBL
Match: A8UAD8 (40S ribosomal protein S13 OS=Barentsia elongata OX=478378 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 5   LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
           +L +KGL PEIPEDLYHLIKK VSIRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of IVF0010459 vs. NCBI nr
Match: KAA0051875.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 3.27e-20
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5  LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 51
          +L + GLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of IVF0010459 vs. NCBI nr
Match: KAA0059571.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.33e-19
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 5  LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 51
          +L + GLTPEIPEDLYHLIKK VSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLTPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of IVF0010459 vs. NCBI nr
Match: KAA0043612.1 (40S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 6.01e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1   MCVFLLL--SKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 51
           +C+ ++L  S GL PEIPEDLYHLIKK VSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 62  VCIGVILRDSHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 114

[Close]

BLAST of IVF0010459 vs. NCBI nr
Match: KAA0049888.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 7.69e-19
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 5  LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 51
          +L + GL PEIPEDLYHLIKK VSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of IVF0010459 vs. NCBI nr
Match: TYK07625.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK14810.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK15131.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK22659.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 7.69e-19
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 5  LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 51
          +L + GL PEIPEDLYHLIKK VSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of IVF0010459 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-16
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 5   LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GL PEIPEDLYHLIKK V+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of IVF0010459 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-16
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 5   LLLSKGLTPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GL PEIPEDLYHLIKK V+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

The following BLAST results are available for this feature:

BLAST of IVF0010459 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.6e-15	85.11	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P62299	2.1e-15	79.59	40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2	[more]
P62300	2.1e-15	79.59	40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2	[more]
P59223	3.6e-15	82.98	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P59224	3.6e-15	82.98	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]

BLAST of IVF0010459 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9F0	1.4e-14	89.36	Putative ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7UDU2	1.8e-14	91.49	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7V1J4	5.4e-14	89.36	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7TK12	9.2e-14	81.13	40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A8UAD8	1.2e-13	87.23	40S ribosomal protein S13 OS=Barentsia elongata OX=478378 PE=2 SV=1	[more]

BLAST of IVF0010459 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051875.1	3.27e-20	91.49	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
KAA0059571.1	1.33e-19	89.36	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
KAA0043612.1	6.01e-19	81.13	40S ribosomal protein S13 [Cucumis melo var. makuwa]	[more]
KAA0049888.1	7.69e-19	87.23	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
TYK07625.1	7.69e-19	87.23	40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK14810.1 40S riboso...	[more]

BLAST of IVF0010459 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	2.5e-16	82.98	Ribosomal protein S13/S15	[more]
AT4G00100.1	2.5e-16	82.98	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.10		coord: 13..51 e-value: 1.8E-20 score: 74.9
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 5..51
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 12..49 e-value: 9.3E-8 score: 32.2
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 5..51
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 9..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010459.2	IVF0010459.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome