IVF0010434 (gene) Melon (IVF77) v1

Overview
NameIVF0010434
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, unclassified
Locationchr11: 23588325 .. 23588603 (-)
RNA-Seq ExpressionIVF0010434
SyntenyIVF0010434
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAGGAATGATTGTGTTAGAGTGCAAAACTGATGATCAGAAGGCTCTCCAAGAGGTGTATTACATTCTAAAGCTACTTAGCAACATCATAAGCCTTGGGCAAATGACAGAAGACGAAAACAAGGTACAAATGGCGGGAGATGCCATGAAAGTGTCTGACAGGAGTAGGAAGCTTTTGATGTCGAGGAAGCAAACACAAAATAGTTTGTACAAGATAACCTTGAAGATGTTCAAGCAAGTTTGCCTTCTGACAAGCCTAGAAGATCCAACATAG

mRNA sequence

ATGGAAAAAGGAATGATTGTGTTAGAGTGCAAAACTGATGATCAGAAGGCTCTCCAAGAGGTGTATTACATTCTAAAGCTACTTAGCAACATCATAAGCCTTGGGCAAATGACAGAAGACGAAAACAAGGTACAAATGGCGGGAGATGCCATGAAAGTGTCTGACAGGAGTAGGAAGCTTTTGATGTCGAGGAAGCAAACACAAAATAGTTTGTACAAGATAACCTTGAAGATGTTCAAGCAAGTTTGCCTTCTGACAAGCCTAGAAGATCCAACATAG

Coding sequence (CDS)

ATGGAAAAAGGAATGATTGTGTTAGAGTGCAAAACTGATGATCAGAAGGCTCTCCAAGAGGTGTATTACATTCTAAAGCTACTTAGCAACATCATAAGCCTTGGGCAAATGACAGAAGACGAAAACAAGGTACAAATGGCGGGAGATGCCATGAAAGTGTCTGACAGGAGTAGGAAGCTTTTGATGTCGAGGAAGCAAACACAAAATAGTTTGTACAAGATAACCTTGAAGATGTTCAAGCAAGTTTGCCTTCTGACAAGCCTAGAAGATCCAACATAG

Protein sequence

MEKGMIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLMSRKQTQNSLYKITLKMFKQVCLLTSLEDPT
Homology
BLAST of IVF0010434 vs. ExPASy TrEMBL
Match: A0A5A7SWA2 (Putative retroelement OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G001030 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 5  MIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLMSR 64
          MIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLMSR
Sbjct: 1  MIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLMSR 60

Query: 65 KQTQNSLYKITLKMFKQVCLLTSLEDPT 93
          KQTQNSLYKITLKMFKQVCLLTSLEDPT
Sbjct: 61 KQTQNSLYKITLKMFKQVCLLTSLEDPT 88

BLAST of IVF0010434 vs. ExPASy TrEMBL
Match: A0A5A7SY21 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00680 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.5e-25
Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = 0

Query: 5  MIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLMSR 64
          M+V  CK DDQKALQ+VYYILKL SNIISL ++TED NK+QM GD +KV +RS KLLMS 
Sbjct: 1  MVVFMCKNDDQKALQKVYYILKLCSNIISLRKVTEDGNKLQMMGDVIKVPNRSGKLLMSM 60

Query: 65 KQTQNSLYKITLKMFKQVCLLTSLEDPT 93
          K+TQN LYKI LK FKQVC LTSL+DPT
Sbjct: 61 KRTQNCLYKIILKTFKQVCFLTSLKDPT 88

BLAST of IVF0010434 vs. ExPASy TrEMBL
Match: A0A251VAV7 (Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g0090001 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.5e-14
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 3   KGMIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLM 62
           KG ++ +CK  DQ  L+EVY+I  L SNIISLGQMTE+  ++ M GD +K+SD   KL+M
Sbjct: 428 KGTVLFKCKNGDQFVLREVYFIPALNSNIISLGQMTEEGYEIVMRGDYLKISDEEGKLIM 487

Query: 63  SRKQTQNSLYKITLKMFKQVCLLTSLED 91
             +++ N LYKI L   K VCLLT+L+D
Sbjct: 488 KVQRSTNRLYKIVLHTSKPVCLLTNLDD 515

BLAST of IVF0010434 vs. ExPASy TrEMBL
Match: A0A6L2JF84 (Zinc finger, CCHC-type OS=Tanacetum cinerariifolium OX=118510 GN=Tci_007225 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0

Query: 1   MEKGMIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKL 60
           M KG ++ +CK  DQ+ L EVY+I  L SNIISLG+MTE  ++V++ G  ++V DRS+ L
Sbjct: 207 MGKGSVLFDCKNGDQRLLNEVYFIPSLKSNIISLGKMTEQGSRVELVGCLLRVFDRSKNL 266

Query: 61  LMSRKQTQNSLYKITLKMFKQVCLLTSLEDP 92
           LM  K++ N LYK+ LK     CLL + ++P
Sbjct: 267 LMRVKRSPNRLYKVILKTGHFTCLLATRDEP 297

BLAST of IVF0010434 vs. ExPASy TrEMBL
Match: L0P2J7 (PH01B015M02.3 protein OS=Phyllostachys edulis OX=38705 GN=PH01B015M02.3 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 0

Query: 3   KGMIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLM 62
           KG ++L CK  DQK L ++Y+I  L +NI+SLGQ+ E   +V++ G+ ++V D+++ LLM
Sbjct: 350 KGTMLLRCKNGDQKMLPDIYFIPSLCNNILSLGQLAERGCRVELQGEFLRVYDKNKDLLM 409

Query: 63  SRKQTQNSLYKITLKMFKQVCLLTSLEDP 92
           + K++ N LYKI+L+  K VC+  SLE P
Sbjct: 410 NVKRSPNRLYKISLETCKSVCVKDSLEKP 438

BLAST of IVF0010434 vs. NCBI nr
Match: KAA0033517.1 (putative retroelement [Cucumis melo var. makuwa] >TYJ95671.1 putative retroelement [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (426), Expect = 2.31e-52
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 5  MIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLMSR 64
          MIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLMSR
Sbjct: 1  MIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLMSR 60

Query: 65 KQTQNSLYKITLKMFKQVCLLTSLEDPT 92
          KQTQNSLYKITLKMFKQVCLLTSLEDPT
Sbjct: 61 KQTQNSLYKITLKMFKQVCLLTSLEDPT 88

BLAST of IVF0010434 vs. NCBI nr
Match: XP_031741708.1 (uncharacterized protein LOC116403903 [Cucumis sativus])

HSP 1 Score: 140 bits (352), Expect = 1.91e-38
Identity = 74/92 (80.43%), Postives = 78/92 (84.78%), Query Frame = 0

Query: 1   MEKGMIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKL 60
           MEKGM++ ECK  DQKALQEVYYI KL SNIISLGQMTE+ NKVQM  D MKVSDRS KL
Sbjct: 162 MEKGMVMFECKNGDQKALQEVYYIPKLCSNIISLGQMTENGNKVQMTEDVMKVSDRSGKL 221

Query: 61  LMSRKQTQNSLYKITLKMFKQVCLLTSLEDPT 92
           LMS K+TQN LYKITLK  KQVCLLTSLEDPT
Sbjct: 222 LMSVKRTQNCLYKITLKTLKQVCLLTSLEDPT 253

BLAST of IVF0010434 vs. NCBI nr
Match: XP_031741713.1 (uncharacterized protein LOC116403908 [Cucumis sativus])

HSP 1 Score: 135 bits (341), Expect = 2.05e-35
Identity = 73/92 (79.35%), Postives = 76/92 (82.61%), Query Frame = 0

Query: 1   MEKGMIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKL 60
           MEKG ++ ECK  DQKALQEVYYI KL SNIISLGQMTE+ NKVQM  D MKVSDRS KL
Sbjct: 377 MEKGTVMFECKNGDQKALQEVYYIPKLCSNIISLGQMTENGNKVQMIEDIMKVSDRSGKL 436

Query: 61  LMSRKQTQNSLYKITLKMFKQVCLLTSLEDPT 92
           LMS K TQN LYKITLK  KQVCLLTSLEDPT
Sbjct: 437 LMSVKGTQNRLYKITLKTLKQVCLLTSLEDPT 468

BLAST of IVF0010434 vs. NCBI nr
Match: KAA0035950.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa] >TYK30450.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 3.40e-33
Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = 0

Query: 5  MIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKLLMSR 64
          M+V  CK DDQKALQ+VYYILKL SNIISL ++TED NK+QM GD +KV +RS KLLMS 
Sbjct: 1  MVVFMCKNDDQKALQKVYYILKLCSNIISLRKVTEDGNKLQMMGDVIKVPNRSGKLLMSM 60

Query: 65 KQTQNSLYKITLKMFKQVCLLTSLEDPT 92
          K+TQN LYKI LK FKQVC LTSL+DPT
Sbjct: 61 KRTQNCLYKIILKTFKQVCFLTSLKDPT 88

BLAST of IVF0010434 vs. NCBI nr
Match: XP_042450925.1 (uncharacterized protein LOC122035851 [Zingiber officinale])

HSP 1 Score: 124 bits (311), Expect = 4.22e-31
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 0

Query: 1   MEKGMIVLECKTDDQKALQEVYYILKLLSNIISLGQMTEDENKVQMAGDAMKVSDRSRKL 60
           M KG +V ECK  DQKA+ EVYYI KL SNIISLGQ+TE  N+V M GD MKV DRS KL
Sbjct: 397 MGKGTVVFECKNGDQKAIHEVYYIPKLCSNIISLGQLTEIGNEVHMEGDTMKVIDRSGKL 456

Query: 61  LMSRKQTQNSLYKITLKMFKQVCLLTSLEDPT 92
           L+  K+TQN LYKITLK FKQVCL+ SLEDPT
Sbjct: 457 LIQVKRTQNRLYKITLKTFKQVCLIASLEDPT 488

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SWA21.5e-38100.00Putative retroelement OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10... [more]
A0A5A7SY215.5e-2572.73Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1... [more]
A0A251VAV71.5e-1452.27Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g00... [more]
A0A6L2JF842.2e-1347.25Zinc finger, CCHC-type OS=Tanacetum cinerariifolium OX=118510 GN=Tci_007225 PE=4... [more]
L0P2J71.8e-1244.94PH01B015M02.3 protein OS=Phyllostachys edulis OX=38705 GN=PH01B015M02.3 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
KAA0033517.12.31e-52100.00putative retroelement [Cucumis melo var. makuwa] >TYJ95671.1 putative retroeleme... [more]
XP_031741708.11.91e-3880.43uncharacterized protein LOC116403903 [Cucumis sativus][more]
XP_031741713.12.05e-3579.35uncharacterized protein LOC116403908 [Cucumis sativus][more]
KAA0035950.13.40e-3372.73retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa] >TYK3... [more]
XP_042450925.14.22e-3170.65uncharacterized protein LOC122035851 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010434.2IVF0010434.2mRNA