IVF0010373 (gene) Melon (IVF77) v1

Overview


Name	IVF0010373
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Organic cation/carnitine transporter 7
Location	chr08: 16675815 .. 16676063 (+)
RNA-Seq Expression	IVF0010373
Synteny	IVF0010373

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTTTGGGAATTTTCGAATTCTTGTGCTTGCTTATGCTGGAATGGAATGGGTGTTAGAAGCTATGGAATTGATGTTGATCTCCTTTGTTGGACTTGGAGTCCAGTCTGCATGGAACCTTTCTCCCCATGAAGAGTCTTTGATCACCCGTGTGGTTTTTGCAAGTATGTTAGTTGGGGCCTATACATGGGGCATAGTCTCCGATAAATATGGACCGTCCCCGTTGAAGGATCGGAGGAGTCACTGA

mRNA sequence

ATGCGTTTTGGGAATTTTCGAATTCTTGTGCTTGCTTATGCTGGAATGGAATGGGTGTTAGAAGCTATGGAATTGATGTTGATCTCCTTTGTTGGACTTGGAGTCCAGTCTGCATGGAACCTTTCTCCCCATGAAGAGTCTTTGATCACCCGTGTGGTTTTTGCAAGTATGTTAGTTGGGGCCTATACATGGGGCATAGTCTCCGATAAATATGGACCGTCCCCGTTGAAGGATCGGAGGAGTCACTGA

Coding sequence (CDS)

ATGCGTTTTGGGAATTTTCGAATTCTTGTGCTTGCTTATGCTGGAATGGAATGGGTGTTAGAAGCTATGGAATTGATGTTGATCTCCTTTGTTGGACTTGGAGTCCAGTCTGCATGGAACCTTTCTCCCCATGAAGAGTCTTTGATCACCCGTGTGGTTTTTGCAAGTATGTTAGTTGGGGCCTATACATGGGGCATAGTCTCCGATAAATATGGACCGTCCCCGTTGAAGGATCGGAGGAGTCACTGA

Protein sequence

MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAYTWGIVSDKYGPSPLKDRRSH

Homology

[Close]

BLAST of IVF0010373 vs. ExPASy Swiss-Prot
Match: Q940M4 (Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.9e-24
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
          M FG F+I VLAYAGM WV EAME+ML+SFVG  VQS WNLS  +ESLIT VVFA ML+G
Sbjct: 17 MGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITSVVFAGMLIG 76

Query: 61 AYTWGIVSDKYG 73
          AY+WGIVSDK+G
Sbjct: 77 AYSWGIVSDKHG 88

[Close]

BLAST of IVF0010373 vs. ExPASy Swiss-Prot
Match: P30638 (Putative transporter svop-1 OS=Caenorhabditis elegans OX=6239 GN=svop-1 PE=3 SV=5)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 23/70 (32.86%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 3   FGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
           FG F++ +    GM W+ +AME+ML+S +   +   W +S  +++L+T  VF+ M++ + 
Sbjct: 78  FGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTTCVFSGMMLSST 137

Query: 63  TWGIVSDKYG 73
            WG + D++G
Sbjct: 138 FWGKICDRFG 147

[Close]

BLAST of IVF0010373 vs. ExPASy Swiss-Prot
Match: Q2XWK0 (Synaptic vesicle 2-related protein OS=Xenopus laevis OX=8355 GN=svop PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.9e-08
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 3   FGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
           FG F+  +    G+ W+ +AME+M++S +   +   W L   + +L+T VVF  M+  + 
Sbjct: 79  FGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMASSS 138

Query: 63  TWGIVSDKYG 73
            WG VSD+YG
Sbjct: 139 LWGNVSDQYG 148

[Close]

BLAST of IVF0010373 vs. ExPASy Swiss-Prot
Match: Q1JP63 (Synaptic vesicle 2-related protein OS=Bos taurus OX=9913 GN=SVOP PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 24/70 (34.29%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 3   FGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
           FG F+  +    G+ W+ +AME+M++S +   +   W L   + +L+T VVF  M+  + 
Sbjct: 79  FGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSST 138

Query: 63  TWGIVSDKYG 73
            WG +SD+YG
Sbjct: 139 LWGNISDQYG 148

[Close]

BLAST of IVF0010373 vs. ExPASy Swiss-Prot
Match: Q8N4V2 (Synaptic vesicle 2-related protein OS=Homo sapiens OX=9606 GN=SVOP PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 24/70 (34.29%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 3   FGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
           FG F+  +    G+ W+ +AME+M++S +   +   W L   + +L+T VVF  M+  + 
Sbjct: 79  FGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSST 138

Query: 63  TWGIVSDKYG 73
            WG +SD+YG
Sbjct: 139 LWGNISDQYG 148

[Close]

BLAST of IVF0010373 vs. ExPASy TrEMBL
Match: A0A5D3E221 (Organic cation/carnitine transporter 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00570 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.8e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
          MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG
Sbjct: 1  MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60

Query: 61 AYTWGIVSDKYGPSPLKDRRSH 83
          AYTWGIVSDKYGPSPLKDRRSH
Sbjct: 61 AYTWGIVSDKYGPSPLKDRRSH 82

[Close]

BLAST of IVF0010373 vs. ExPASy TrEMBL
Match: A0A5A7SWS5 (Organic cation/carnitine transporter 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00690 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.7e-38
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
          MRFGNFRILVLAYAGMEWVLE+MELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG
Sbjct: 1  MRFGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60

Query: 61 AYTWGIVSDKYGPSPLKDRRSH 83
          AYTWGIVSDKYGPSPLKDRRSH
Sbjct: 61 AYTWGIVSDKYGPSPLKDRRSH 82

[Close]

BLAST of IVF0010373 vs. ExPASy TrEMBL
Match: A0A5A7T162 (Organic cation/carnitine transporter 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00440 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.4e-26
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
           M FGNF+ILVLAYAGM W+ EAME+ML+SFVG  VQSAWNLSPHEESLIT VVFA MLVG
Sbjct: 35  MGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWNLSPHEESLITSVVFAGMLVG 94

Query: 61  AYTWGIVSDKYG 73
           AYTWGIVSDKYG
Sbjct: 95  AYTWGIVSDKYG 106

[Close]

BLAST of IVF0010373 vs. ExPASy TrEMBL
Match: A0A1S3C3X5 (organic cation/carnitine transporter 7 OS=Cucumis melo OX=3656 GN=LOC103496199 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.4e-26
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
           M FGNF+ILVLAYAGM W+ EAME+ML+SFVG  VQSAWNLSPHEESLIT VVFA MLVG
Sbjct: 35  MGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWNLSPHEESLITSVVFAGMLVG 94

Query: 61  AYTWGIVSDKYG 73
           AYTWGIVSDKYG
Sbjct: 95  AYTWGIVSDKYG 106

[Close]

BLAST of IVF0010373 vs. ExPASy TrEMBL
Match: A0A0A0L6X7 (MFS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G198470 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
           M FGNF+ILVLAYAGM WV EAME+ML+SFVG  VQS+WNLSPHEESLIT VVFA MLVG
Sbjct: 35  MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSSWNLSPHEESLITSVVFAGMLVG 94

Query: 61  AYTWGIVSDKYG 73
           AY WGIVSDKYG
Sbjct: 95  AYAWGIVSDKYG 106

[Close]

BLAST of IVF0010373 vs. NCBI nr
Match: TYK29828.1 (organic cation/carnitine transporter 7 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 3.65e-52
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
          MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG
Sbjct: 1  MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60

Query: 61 AYTWGIVSDKYGPSPLKDRRSH 82
          AYTWGIVSDKYGPSPLKDRRSH
Sbjct: 61 AYTWGIVSDKYGPSPLKDRRSH 82

[Close]

BLAST of IVF0010373 vs. NCBI nr
Match: KAA0035784.1 (organic cation/carnitine transporter 7 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (420), Expect = 1.05e-51
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
          MRFGNFRILVLAYAGMEWVLE+MELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG
Sbjct: 1  MRFGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60

Query: 61 AYTWGIVSDKYGPSPLKDRRSH 82
          AYTWGIVSDKYGPSPLKDRRSH
Sbjct: 61 AYTWGIVSDKYGPSPLKDRRSH 82

[Close]

BLAST of IVF0010373 vs. NCBI nr
Match: XP_008456184.1 (PREDICTED: organic cation/carnitine transporter 7 [Cucumis melo] >KAA0037214.1 organic cation/carnitine transporter 7 [Cucumis melo var. makuwa] >TYK13859.1 organic cation/carnitine transporter 7 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 6.23e-32
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
           M FGNF+ILVLAYAGM W+ EAME+ML+SFVG  VQSAWNLSPHEESLIT VVFA MLVG
Sbjct: 35  MGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWNLSPHEESLITSVVFAGMLVG 94

Query: 61  AYTWGIVSDKYG 72
           AYTWGIVSDKYG
Sbjct: 95  AYTWGIVSDKYG 106

[Close]

BLAST of IVF0010373 vs. NCBI nr
Match: XP_004140724.1 (organic cation/carnitine transporter 7 isoform X1 [Cucumis sativus])

HSP 1 Score: 123 bits (309), Expect = 6.17e-31
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
           M FGNF+ILVLAYAGM WV EAME+ML+SFVG  VQS+WNLSPHEESLIT VVFA MLVG
Sbjct: 35  MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSSWNLSPHEESLITSVVFAGMLVG 94

Query: 61  AYTWGIVSDKYG 72
           AY WGIVSDKYG
Sbjct: 95  AYAWGIVSDKYG 106

[Close]

BLAST of IVF0010373 vs. NCBI nr
Match: XP_038894162.1 (organic cation/carnitine transporter 7 isoform X1 [Benincasa hispida])

HSP 1 Score: 123 bits (308), Expect = 8.78e-31
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
           M FGNF+ILVLAYAGM WV EAME+ML+SFVG  VQSAW+LSPHEESLIT VVFA MLVG
Sbjct: 38  MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHEESLITSVVFAGMLVG 97

Query: 61  AYTWGIVSDKYG 72
           AY+WGIVSDKYG
Sbjct: 98  AYSWGIVSDKYG 109

[Close]

BLAST of IVF0010373 vs. TAIR 10
Match: AT3G13050.1 (Major facilitator superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 6.3e-25
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MRFGNFRILVLAYAGMEWVLEAMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
          M FG F+I VLAYAGM WV EAME+ML+SFVG  VQS WNLS  +ESLIT VVFA ML+G
Sbjct: 17 MGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITSVVFAGMLIG 76

Query: 61 AYTWGIVSDKYG 73
          AY+WGIVSDK+G
Sbjct: 77 AYSWGIVSDKHG 88

The following BLAST results are available for this feature:

BLAST of IVF0010373 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940M4	8.9e-24	73.61	Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 P...	[more]
P30638	1.1e-08	32.86	Putative transporter svop-1 OS=Caenorhabditis elegans OX=6239 GN=svop-1 PE=3 SV=...	[more]
Q2XWK0	8.9e-08	35.71	Synaptic vesicle 2-related protein OS=Xenopus laevis OX=8355 GN=svop PE=2 SV=1	[more]
Q1JP63	1.2e-07	34.29	Synaptic vesicle 2-related protein OS=Bos taurus OX=9913 GN=SVOP PE=2 SV=1	[more]
Q8N4V2	1.2e-07	34.29	Synaptic vesicle 2-related protein OS=Homo sapiens OX=9606 GN=SVOP PE=1 SV=1	[more]

BLAST of IVF0010373 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E221	7.8e-39	100.00	Organic cation/carnitine transporter 7 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7SWS5	1.7e-38	98.78	Organic cation/carnitine transporter 7 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7T162	3.4e-26	84.72	Organic cation/carnitine transporter 7 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C3X5	3.4e-26	84.72	organic cation/carnitine transporter 7 OS=Cucumis melo OX=3656 GN=LOC103496199 P...	[more]
A0A0A0L6X7	2.2e-25	83.33	MFS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G198470 PE=4 SV...	[more]

BLAST of IVF0010373 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29828.1	3.65e-52	100.00	organic cation/carnitine transporter 7 [Cucumis melo var. makuwa]	[more]
KAA0035784.1	1.05e-51	98.78	organic cation/carnitine transporter 7 [Cucumis melo var. makuwa]	[more]
XP_008456184.1	6.23e-32	84.72	PREDICTED: organic cation/carnitine transporter 7 [Cucumis melo] >KAA0037214.1 o...	[more]
XP_004140724.1	6.17e-31	83.33	organic cation/carnitine transporter 7 isoform X1 [Cucumis sativus]	[more]
XP_038894162.1	8.78e-31	83.33	organic cation/carnitine transporter 7 isoform X1 [Benincasa hispida]	[more]

BLAST of IVF0010373 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13050.1	6.3e-25	73.61	Major facilitator superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036259	MFS transporter superfamily	GENE3D	1.20.1250.20	MFS general substrate transporter like domains	coord: 5..76 e-value: 2.9E-8 score: 35.0
IPR036259	MFS transporter superfamily	SUPERFAMILY	103473	MFS general substrate transporter	coord: 4..75
None	No IPR available	PANTHER	PTHR24064	SOLUTE CARRIER FAMILY 22 MEMBER	coord: 2..72
None	No IPR available	PANTHER	PTHR24064:SF557	BNAA01G30100D PROTEIN	coord: 2..72
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 10..82 score: 9.888723

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010373.1	IVF0010373.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2001142	nicotinate transport
biological_process	GO:2001143	N-methylnicotinate transport
biological_process	GO:0006817	phosphate ion transport
biological_process	GO:0050896	response to stimulus
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0090416	nicotinate transmembrane transporter activity
molecular_function	GO:0090417	N-methylnicotinate transmembrane transporter activity
molecular_function	GO:0022857	transmembrane transporter activity