IVF0010345 (gene) Melon (IVF77) v1

Overview
NameIVF0010345
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Locationchr09: 12853606 .. 12854117 (-)
RNA-Seq ExpressionIVF0010345
SyntenyIVF0010345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCTAAGCTGCCAAAGTCACTGCCTTCTCAATGGGAGATTGATAATGAGATTAAACTTGTTCTAGGAACCAAACCTCCAGCAAAGAATGCTTACGGAATGGCTCCACCTGAGTTAGCTGAGCTCAAGAAACAGTTAGATGAGTTATTGGCTGCTAGATTTATAAGACCTGAGAAAGCTCCCAATGAGGCTCCTGTGCTGTTTGAGAAGTAGAAAGACGGAACACTCCAATTAGGTATAGACTACAAAGCTTTAAACAAGGTTACAATTCAAAACATATATCCTCTCCCGATTATAAATGATTTTTTTTTTTACCAATTTAATGGAACTCAGTACTTTACAAAGCTCGACCTCCTGCCAGACAATTACCATGTTCAAATAACACAAGGGAACGAACTAAAGACTACTCACGTAACAAGGCATGGGGCCTTCGAGTTCCTCTTAATGCCTTTTAGCTTGACAAACGTCCCCATAACCTTTTGCAGCTTAATGAATTAGATATTCCATGA

mRNA sequence

ATGCCACCTAAGCTGCCAAAGTCACTGCCTTCTCAATGGGAGATTGATAATGAGATTAAACTTGTTCTAGGAACCAAACCTCCAGCAAAGAATGCTTACGGAATGGCTCCACCTGAGTTAGCTGAGCTCAAGAAACAGTTAGATGAGTTATTGGCTGCTAGATTTATAAGACCTGAGAAAAAAGACGGAACACTCCAATTAGTACTTTACAAAGCTCGACCTCCTGCCAGACAATTACCATGTTCAAATAACACAAGGGAACGAACTAAAGACTACTCACGTAACAAGCTTGACAAACGTCCCCATAACCTTTTGCAGCTTAATGAATTAGATATTCCATGA

Coding sequence (CDS)

ATGCCACCTAAGCTGCCAAAGTCACTGCCTTCTCAATGGGAGATTGATAATGAGATTAAACTTGTTCTAGGAACCAAACCTCCAGCAAAGAATGCTTACGGAATGGCTCCACCTGAGTTAGCTGAGCTCAAGAAACAGTTAGATGAGTTATTGGCTGCTAGATTTATAAGACCTGAGAAAAAAGACGGAACACTCCAATTAGTACTTTACAAAGCTCGACCTCCTGCCAGACAATTACCATGTTCAAATAACACAAGGGAACGAACTAAAGACTACTCACGTAACAAGCTTGACAAACGTCCCCATAACCTTTTGCAGCTTAATGAATTAGATATTCCATGA

Protein sequence

MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEKKDGTLQLVLYKARPPARQLPCSNNTRERTKDYSRNKLDKRPHNLLQLNELDIP
Homology
BLAST of IVF0010345 vs. ExPASy TrEMBL
Match: A0A5A7V9H9 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002590 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 5   LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK 61
           LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK
Sbjct: 173 LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK 228

BLAST of IVF0010345 vs. ExPASy TrEMBL
Match: A0A5D3DJF7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004330 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1   MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP-- 60
           MP  LPKSLP +  ID+EIKLV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP  
Sbjct: 131 MPDSLPKSLPPRRMIDHEIKLVPGVKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAK 190

Query: 61  ----------EKKDGTLQL-VLYKA 73
                     +KKDG+L+L ++Y+A
Sbjct: 191 APYGAPVLFKKKKDGSLRLCIVYRA 215

BLAST of IVF0010345 vs. ExPASy TrEMBL
Match: A0A5A7TB80 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold460G00370 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1   MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP-- 60
           MP  LPKSLP +  ID+EIKLV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP  
Sbjct: 131 MPDSLPKSLPPRRMIDHEIKLVPGVKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAK 190

Query: 61  ----------EKKDGTLQL-VLYKA 73
                     +KKDG+L+L ++Y+A
Sbjct: 191 APYGAPVLFKKKKDGSLRLCIVYRA 215

BLAST of IVF0010345 vs. ExPASy TrEMBL
Match: A0A5A7UAP7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00960 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.5e-16
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 1   MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP-- 60
           MP  LPKSLP Q  ID+EI+LV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP  
Sbjct: 364 MPDSLPKSLPPQRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAK 423

Query: 61  ----------EKKDGTLQLVLY 71
                     +KKDG+L+L ++
Sbjct: 424 APYGAPVLFQKKKDGSLRLCIH 445

BLAST of IVF0010345 vs. ExPASy TrEMBL
Match: A0A5D3DEJ3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00860 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1   MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP-- 60
           MP  LPKSLP +  ID+EI+LV G KPPAKNAY MAPPEL EL+KQLDELL ARFIRP  
Sbjct: 561 MPDSLPKSLPPRRMIDHEIELVSGEKPPAKNAYRMAPPELTELRKQLDELLNARFIRPAK 620

Query: 61  ----------EKKDGTLQLVL-YKA 73
                     +KKDG+L+L + Y+A
Sbjct: 621 ASYGAPVLFQKKKDGSLRLCIDYRA 645

BLAST of IVF0010345 vs. NCBI nr
Match: KAA0062359.1 (uncharacterized protein E6C27_scaffold154G001260 [Cucumis melo var. makuwa] >TYK26619.1 uncharacterized protein E5676_scaffold313G002590 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 3.57e-27
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 5   LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK 60
           LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK
Sbjct: 173 LPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRPEK 228

BLAST of IVF0010345 vs. NCBI nr
Match: KAA0041960.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK17895.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 5.43e-19
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 0

Query: 1   MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP-- 60
           MP  LPKSLP +  ID+EI+LV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP  
Sbjct: 30  MPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAEFIRPAK 89

Query: 61  ----------EKKDGTLQLVL 69
                     +KKDG+L+L +
Sbjct: 90  APYGAPVLFQKKKDGSLRLCI 110

BLAST of IVF0010345 vs. NCBI nr
Match: TYK23369.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 6.75e-19
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1   MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP-- 60
           MP  LPKSLP +  ID+EIKLV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP  
Sbjct: 131 MPDSLPKSLPPRRMIDHEIKLVPGVKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAK 190

Query: 61  ----------EKKDGTLQL-VLYKA 72
                     +KKDG+L+L ++Y+A
Sbjct: 191 APYGAPVLFKKKKDGSLRLCIVYRA 215

BLAST of IVF0010345 vs. NCBI nr
Match: KAA0040333.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 6.75e-19
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1   MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP-- 60
           MP  LPKSLP +  ID+EIKLV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP  
Sbjct: 131 MPDSLPKSLPPRRMIDHEIKLVPGVKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAK 190

Query: 61  ----------EKKDGTLQL-VLYKA 72
                     +KKDG+L+L ++Y+A
Sbjct: 191 APYGAPVLFKKKKDGSLRLCIVYRA 215

BLAST of IVF0010345 vs. NCBI nr
Match: KAA0052270.1 (uncharacterized protein E6C27_scaffold207G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 9.03e-19
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 1   MPPKLPKSLPSQWEIDNEIKLVLGTKPPAKNAYGMAPPELAELKKQLDELLAARFIRP-- 60
           MP  LPKSLP Q  ID+EI+LV G KPPAKNAY MAPPELAEL+KQLDELL A FIRP  
Sbjct: 364 MPDSLPKSLPPQRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAK 423

Query: 61  ----------EKKDGTLQLVLY 70
                     +KKDG+L+L ++
Sbjct: 424 APYGAPVLFQKKKDGSLRLCIH 445

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V9H91.8e-22100.00RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3DJF74.4e-1662.35Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14... [more]
A0A5A7TB804.4e-1662.35Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46... [more]
A0A5A7UAP77.5e-1662.20Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3DEJ31.3e-1561.18Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31... [more]
Match NameE-valueIdentityDescription
KAA0062359.13.57e-27100.00uncharacterized protein E6C27_scaffold154G001260 [Cucumis melo var. makuwa] >TYK... [more]
KAA0041960.15.43e-1961.73reverse transcriptase [Cucumis melo var. makuwa] >TYK17895.1 reverse transcripta... [more]
TYK23369.16.75e-1962.35reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0040333.16.75e-1962.35reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0052270.19.03e-1962.20uncharacterized protein E6C27_scaffold207G00960 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 6..110
e-value: 2.7E-8
score: 35.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..102
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 5..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010345.1IVF0010345.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process