IVF0010259 (gene) Melon (IVF77) v1

Overview
NameIVF0010259
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr02: 17137261 .. 17137656 (+)
RNA-Seq ExpressionIVF0010259
SyntenyIVF0010259
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCAAATATGAAAGGCAAAAAATCACCACAGATGATGTAATATCAGCAATAAAAACCAAAGAACTAGAGTTAAATTCACAGAGGAAATATCAATCAAATGGTGAAGGTTTATTTTCAAAAGGTAAAAGCAAAAGCCACTTTAAAGAAAGCAGGAATCAAAAGAATAAGTCAAAGGTGGAATGCACATTTTGCCACAAAAGGGGACATCTTAGACAAGACTGTTTCTTTCTAAAGAAAAAGCAAAATCAAAAGAAACAAAAGGAAAAACAACAAGAAGAACCAAAGGCAGAAGCATCGGTAGTAGATCAAACTCCATTTATGTATTCAGATGCCTTAACCATCTCAAAAAATTCAATGAAAACAGAAGGCAATGAAGAAACTCATGACTGA

mRNA sequence

ATGGCTCTCAAATATGAAAGGCAAAAAATCACCACAGATGATGTAATATCAGCAATAAAAACCAAAGAACTAGAGTTAAATTCACAGAGGAAATATCAATCAAATGGTGAAGGTTTATTTTCAAAAGGTAAAAGCAAAAGCCACTTTAAAGAAAGCAGGAATCAAAAGAATAAGTCAAAGGTGGAATGCACATTTTGCCACAAAAGGGGACATCTTAGACAAGACTGTTTCTTTCTAAAGAAAAAGCAAAATCAAAAGAAACAAAAGGAAAAACAACAAGAAGAACCAAAGGCAGAAGCATCGGTAGTAGATCAAACTCCATTTATGTATTCAGATGCCTTAACCATCTCAAAAAATTCAATGAAAACAGAAGGCAATGAAGAAACTCATGACTGA

Coding sequence (CDS)

ATGGCTCTCAAATATGAAAGGCAAAAAATCACCACAGATGATGTAATATCAGCAATAAAAACCAAAGAACTAGAGTTAAATTCACAGAGGAAATATCAATCAAATGGTGAAGGTTTATTTTCAAAAGGTAAAAGCAAAAGCCACTTTAAAGAAAGCAGGAATCAAAAGAATAAGTCAAAGGTGGAATGCACATTTTGCCACAAAAGGGGACATCTTAGACAAGACTGTTTCTTTCTAAAGAAAAAGCAAAATCAAAAGAAACAAAAGGAAAAACAACAAGAAGAACCAAAGGCAGAAGCATCGGTAGTAGATCAAACTCCATTTATGTATTCAGATGCCTTAACCATCTCAAAAAATTCAATGAAAACAGAAGGCAATGAAGAAACTCATGACTGA

Protein sequence

MALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKSKSHFKESRNQKNKSKVECTFCHKRGHLRQDCFFLKKKQNQKKQKEKQQEEPKAEASVVDQTPFMYSDALTISKNSMKTEGNEETHD
Homology
BLAST of IVF0010259 vs. ExPASy TrEMBL
Match: A0A5D3CAI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00330 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.7e-08
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1   MALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKG 44
           MAL+Y RQKITT  VISAI+T+EL+LNSQR+ QSNGEGLFSKG
Sbjct: 78  MALRYGRQKITTGGVISAIRTRELDLNSQRRDQSNGEGLFSKG 120

BLAST of IVF0010259 vs. ExPASy TrEMBL
Match: A0A5D3DVM0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00690 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 2   ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS---KSHFKESRNQKNK 61
           +LKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKG +   K+  K  R+ ++K
Sbjct: 162 SLKYGRETITVNSVITALKSKELELKTENKTSNAAESLFSKGNNSFRKNSNKNQRSSRDK 221

Query: 62  SKVECTFCHKRGHLRQDC 77
             ++C  CHK GH +++C
Sbjct: 222 PALKCFICHKEGHFKRNC 239

BLAST of IVF0010259 vs. ExPASy TrEMBL
Match: A0A5D3CPM8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00430 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-06
Identity = 45/150 (30.00%), Postives = 77/150 (51.33%), Query Frame = 0

Query: 2   ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKS 61
           ALKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKGK+  + + K  R+ K+K 
Sbjct: 684 ALKYGRETITVNSVITALKSKELELKTENKTSNAAESLFSKGKNSFRKNNKNQRSSKDKP 743

Query: 62  KVECTFCHKRGHLRQDC--------------------FFLKKKQNQKKQKEKQQEEPKAE 121
            ++C  CHK GH +++C                        + +N +++  ++  E   +
Sbjct: 744 ALKCFICHKEGHFKRNCPDRGKNFRRDENRRYRPYGREDFNRNRNYQREDRRRGREHGRD 803

Query: 122 ASVVDQTPFMYSDAL-TISKNSMKTEGNEE 129
              V    F Y++ L   +K +M+ +  EE
Sbjct: 804 HGPVGNEAFEYTEVLVATNKKAMEIDTEEE 833

BLAST of IVF0010259 vs. ExPASy TrEMBL
Match: A0A5A7TMB4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00520 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-06
Identity = 45/150 (30.00%), Postives = 77/150 (51.33%), Query Frame = 0

Query: 2   ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKS 61
           ALKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKGK+  + + K  R+ K+K 
Sbjct: 680 ALKYGRETITVNSVITALKSKELELKTENKTSNAAESLFSKGKNSFRKNNKNQRSSKDKP 739

Query: 62  KVECTFCHKRGHLRQDC--------------------FFLKKKQNQKKQKEKQQEEPKAE 121
            ++C  CHK GH +++C                        + +N +++  ++  E   +
Sbjct: 740 ALKCFICHKEGHFKRNCPDRGKNFRRDENRRYRPYGREDFNRNRNYQREDRRRGREHGRD 799

Query: 122 ASVVDQTPFMYSDAL-TISKNSMKTEGNEE 129
              V    F Y++ L   +K +M+ +  EE
Sbjct: 800 HGPVGNEAFEYTEVLVATNKKAMEIDTEEE 829

BLAST of IVF0010259 vs. ExPASy TrEMBL
Match: A0A2P5AXR9 (Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290120 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.1e-06
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 2   ALKYER-QKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS-KSHFKESRNQ---K 61
           A+ Y R Q IT D+V SA+K KEL    + K ++ GEGL ++G+S K   K  RN+   K
Sbjct: 70  AMLYGREQTITLDEVQSAVKAKELPRKKEGKEENTGEGLMARGRSEKCDNKAPRNESRSK 129

Query: 62  NKSKVECTFCHKRGHLRQDCFFLKKKQNQK 87
           +K +++C  CHK GH ++DC   KKK ++K
Sbjct: 130 SKGRLKCFHCHKEGHFKRDCPDRKKKVHEK 159

BLAST of IVF0010259 vs. NCBI nr
Match: KAA0065687.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK08214.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 4.25e-10
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1   MALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKG 43
           MAL+Y RQKITT  VISAI+T+EL+LNSQR+ QSNGEGLFSKG
Sbjct: 78  MALRYGRQKITTGGVISAIRTRELDLNSQRRDQSNGEGLFSKG 120

BLAST of IVF0010259 vs. NCBI nr
Match: KAA0043186.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.58e-10
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 2   ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKS 61
           ALKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKGK+  + + K  R+ K+K 
Sbjct: 680 ALKYGRETITVNSVITALKSKELELKTENKTSNAAESLFSKGKNSFRKNNKNQRSSKDKP 739

Query: 62  KVECTFCHKRGHLRQDC 76
            ++C  CHK GH +++C
Sbjct: 740 ALKCFICHKEGHFKRNC 756

BLAST of IVF0010259 vs. NCBI nr
Match: TYK12279.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.58e-10
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 2   ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS--KSHFKESRNQKNKS 61
           ALKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKGK+  + + K  R+ K+K 
Sbjct: 684 ALKYGRETITVNSVITALKSKELELKTENKTSNAAESLFSKGKNSFRKNNKNQRSSKDKP 743

Query: 62  KVECTFCHKRGHLRQDC 76
            ++C  CHK GH +++C
Sbjct: 744 ALKCFICHKEGHFKRNC 760

BLAST of IVF0010259 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])

HSP 1 Score: 62.8 bits (151), Expect = 1.18e-08
Identity = 46/117 (39.32%), Postives = 66/117 (56.41%), Query Frame = 0

Query: 2   ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKSKSHFKESRNQKNKSKV 61
           ALKY R++ITT  +ISA+  KELEL   +K Q  GEG F KG +K     +  + N++  
Sbjct: 162 ALKYGRERITTYAIISAVSVKELELQMTKKDQPRGEGFFPKGNNK-----TMGRANRTME 221

Query: 62  ECTFCHKRGHLRQDCFFLKKKQNQKKQKEKQQEEPKAEASVVDQTPFMYSDALTISK 118
            C     R  +++DC+ LK+K NQ+ +  KQ E    E S+V      YSDAL  ++
Sbjct: 222 MCI----RDSMKKDCYALKRKLNQQNKGGKQTEAAVGENSLV------YSDALAATE 263

BLAST of IVF0010259 vs. NCBI nr
Match: TYK27723.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.19e-08
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 2   ALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKS---KSHFKESRNQKNK 61
           +LKY R+ IT + VI+A+K+KELEL ++ K  +  E LFSKG +   K+  K  R+ ++K
Sbjct: 162 SLKYGRETITVNSVITALKSKELELKTENKTSNAAESLFSKGNNSFRKNSNKNQRSSRDK 221

Query: 62  SKVECTFCHKRGHLRQDC 76
             ++C  CHK GH +++C
Sbjct: 222 PALKCFICHKEGHFKRNC 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CAI48.7e-0879.07Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DVM04.3e-0742.31Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CPM83.6e-0630.00Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7TMB43.6e-0630.00Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A2P5AXR98.1e-0643.33Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290120 PE=... [more]
Match NameE-valueIdentityDescription
KAA0065687.14.25e-1079.07retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0043186.15.58e-1045.45pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
TYK12279.15.58e-1045.45pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_038885928.11.18e-0839.32uncharacterized protein LOC120076236 [Benincasa hispida][more]
TYK27723.11.19e-0842.31Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..98
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 44..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010259.2IVF0010259.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding