IVF0010259 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCTCAAATATGAAAGGCAAAAAATCACCACAGATGATGTAATATCAGCAATAAAAACCAAAGAACTAGAGTTAAATTCACAGAGGAAATATCAATCAAATGGTGAAGGTTTATTTTCAAAAGGTAAAAGCAAAAGCCACTTTAAAGAAAGCAGGAATCAAAAGAATAAGTCAAAGGTGGAATGCACATTTTGCCACAAAAGGGGACATCTTAGACAAGACTGTTTCTTTCTAAAGAAAAAGCAAAATCAAAAGAAACAAAAGGAAAAACAACAAGAAGAACCAAAGGCAGAAGCATCGGTAGTAGATCAAACTCCATTTATGTATTCAGATGCCTTAACCATCTCAAAAAATTCAATGAAAACAGAAGGCAATGAAGAAACTCATGACTGA ATGGCTCTCAAATATGAAAGGCAAAAAATCACCACAGATGATGTAATATCAGCAATAAAAACCAAAGAACTAGAGTTAAATTCACAGAGGAAATATCAATCAAATGGTGAAGGTTTATTTTCAAAAGGTAAAAGCAAAAGCCACTTTAAAGAAAGCAGGAATCAAAAGAATAAGTCAAAGGTGGAATGCACATTTTGCCACAAAAGGGGACATCTTAGACAAGACTGTTTCTTTCTAAAGAAAAAGCAAAATCAAAAGAAACAAAAGGAAAAACAACAAGAAGAACCAAAGGCAGAAGCATCGGTAGTAGATCAAACTCCATTTATGTATTCAGATGCCTTAACCATCTCAAAAAATTCAATGAAAACAGAAGGCAATGAAGAAACTCATGACTGA ATGGCTCTCAAATATGAAAGGCAAAAAATCACCACAGATGATGTAATATCAGCAATAAAAACCAAAGAACTAGAGTTAAATTCACAGAGGAAATATCAATCAAATGGTGAAGGTTTATTTTCAAAAGGTAAAAGCAAAAGCCACTTTAAAGAAAGCAGGAATCAAAAGAATAAGTCAAAGGTGGAATGCACATTTTGCCACAAAAGGGGACATCTTAGACAAGACTGTTTCTTTCTAAAGAAAAAGCAAAATCAAAAGAAACAAAAGGAAAAACAACAAGAAGAACCAAAGGCAGAAGCATCGGTAGTAGATCAAACTCCATTTATGTATTCAGATGCCTTAACCATCTCAAAAAATTCAATGAAAACAGAAGGCAATGAAGAAACTCATGACTGA MALKYERQKITTDDVISAIKTKELELNSQRKYQSNGEGLFSKGKSKSHFKESRNQKNKSKVECTFCHKRGHLRQDCFFLKKKQNQKKQKEKQQEEPKAEASVVDQTPFMYSDALTISKNSMKTEGNEETHD Homology
BLAST of IVF0010259 vs. ExPASy TrEMBL
Match: A0A5D3CAI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00330 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 8.7e-08 Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0
BLAST of IVF0010259 vs. ExPASy TrEMBL
Match: A0A5D3DVM0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00690 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07 Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
BLAST of IVF0010259 vs. ExPASy TrEMBL
Match: A0A5D3CPM8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00430 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 3.6e-06 Identity = 45/150 (30.00%), Postives = 77/150 (51.33%), Query Frame = 0
BLAST of IVF0010259 vs. ExPASy TrEMBL
Match: A0A5A7TMB4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00520 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 3.6e-06 Identity = 45/150 (30.00%), Postives = 77/150 (51.33%), Query Frame = 0
BLAST of IVF0010259 vs. ExPASy TrEMBL
Match: A0A2P5AXR9 (Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290120 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 8.1e-06 Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 0
BLAST of IVF0010259 vs. NCBI nr
Match: KAA0065687.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK08214.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 66.2 bits (160), Expect = 4.25e-10 Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0
BLAST of IVF0010259 vs. NCBI nr
Match: KAA0043186.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 67.4 bits (163), Expect = 5.58e-10 Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 0
BLAST of IVF0010259 vs. NCBI nr
Match: TYK12279.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 67.4 bits (163), Expect = 5.58e-10 Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 0
BLAST of IVF0010259 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida]) HSP 1 Score: 62.8 bits (151), Expect = 1.18e-08 Identity = 46/117 (39.32%), Postives = 66/117 (56.41%), Query Frame = 0
BLAST of IVF0010259 vs. NCBI nr
Match: TYK27723.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 63.5 bits (153), Expect = 1.19e-08 Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|