IVF0010239 (gene) Melon (IVF77) v1

Overview
NameIVF0010239
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr01: 32835473 .. 32835849 (-)
RNA-Seq ExpressionIVF0010239
SyntenyIVF0010239
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGTTTCTTCGGGAGTTGTGTTATAAATCTTGGGCCTTCTTCATCTTCTTCTGGGATCTATTTCTCGAAGAAGATTTGTATTGTAATTGTTATCAAATTGCGAACTTTTATTTCTTCTTTTTTTACAAACAAAACTTGAGGGTTGTGTTTAGTTTCTTCATGCTTCGTATAGATTTGGTTACCCTTACATTTTGAATAAGATAGGCTTTGACTTTAAGTTTATCTTTAGTTTTTCTTTTTTTGTTTTCAAAATTGAAGAATCTTGGCTTTAAGTGGAAGAGGCATGATGATGAAGATTACATAATTCCATCTCATGTTGCAAACAGCATTGATGCTGATATTGCAGTTGACATTCTTTCACTCAACTCTTAG

mRNA sequence

ATGGATAGTTTCTTCGGGAGTTGTGTTATAAATCTTGGGCCTTCTTCATCTTCTTCTGGGATCTATTTCTCGAAGAAGATTTGTATTAATCTTGGCTTTAAGTGGAAGAGGCATGATGATGAAGATTACATAATTCCATCTCATGTTGCAAACAGCATTGATGCTGATATTGCAGTTGACATTCTTTCACTCAACTCTTAG

Coding sequence (CDS)

ATGGATAGTTTCTTCGGGAGTTGTGTTATAAATCTTGGGCCTTCTTCATCTTCTTCTGGGATCTATTTCTCGAAGAAGATTTGTATTAATCTTGGCTTTAAGTGGAAGAGGCATGATGATGAAGATTACATAATTCCATCTCATGTTGCAAACAGCATTGATGCTGATATTGCAGTTGACATTCTTTCACTCAACTCTTAG

Protein sequence

MDSFFGSCVINLGPSSSSSGIYFSKKICINLGFKWKRHDDEDYIIPSHVANSIDADIAVDILSLNS
Homology
[Close]
BLAST of IVF0010239 vs. ExPASy TrEMBL
Match: A0A0A0K9Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452190 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1  MDSFFGSCVINLGPSSSSSGIYFSKKICINLGFKWKRHDDEDYIIPSHVANSIDADIAVD 60
          MD+FFG      GPSSSSSGIYFSK+ICIN+GF+WKRH DEDYIIPSHVANSIDADIAVD
Sbjct: 1  MDNFFG------GPSSSSSGIYFSKEICINVGFEWKRHGDEDYIIPSHVANSIDADIAVD 60

Query: 61 ILSLNS 67
          IL LNS
Sbjct: 61 ILPLNS 60

[Close]
BLAST of IVF0010239 vs. NCBI nr
Match: KGN45564.1 (hypothetical protein Csa_016652 [Cucumis sativus])

HSP 1 Score: 107 bits (268), Expect = 4.59e-29
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1  MDSFFGSCVINLGPSSSSSGIYFSKKICINLGFKWKRHDDEDYIIPSHVANSIDADIAVD 60
          MD+FFG      GPSSSSSGIYFSK+ICIN+GF+WKRH DEDYIIPSHVANSIDADIAVD
Sbjct: 1  MDNFFG------GPSSSSSGIYFSKEICINVGFEWKRHGDEDYIIPSHVANSIDADIAVD 60

Query: 61 ILSLNS 66
          IL LNS
Sbjct: 61 ILPLNS 60

The following BLAST results are available for this feature:
BLAST of IVF0010239 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0010239 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9Q31.3e-2081.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452190 PE=4 SV=1[more]
BLAST of IVF0010239 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45564.14.59e-2981.82hypothetical protein Csa_016652 [Cucumis sativus][more]
BLAST of IVF0010239 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010239.1IVF0010239.1mRNA