IVF0010193 (gene) Melon (IVF77) v1

Overview


Name	IVF0010193
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L27A
Location	chr10: 3343770 .. 3344547 (-)
RNA-Seq Expression	IVF0010193
Synteny	IVF0010193

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCATTCCATCTCCTCCGAGCAGCCGAAACCCTAGAGTGTGTGTGTGAGAGAGAGAGAGGGAGAGATCCGCCATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGACATGTCAGTGCCGGACATGGTAGAATCGGCAAACACCGAAAGCATCCTGGTGGTCGGGGAAACGCCGGAGGTATGCACCACCACCGGATTCTCTTCGATAAGTATCACCCTGGTTATTTCGGTAAAGTCGGTATGCGTTATTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTAAACGTTGACAAGATCTGGTCATTGATCCCTCAAGAAGTGAAGGATAAAGCCTCCAAAGACAACGTTCCATTGGTCGATGTTACGCAGTTCGGATATTTCAAGGTTTTGGGCAAGGGTGTCTTACCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTGTCCAAGATCGCCGAGAAGAAGATTAAGGAGGCTGGCGGCGCGGTGGTTCTTACAGCTTAGGTTTGGGTTTCTCTTTGTTATAGAGATTTTTGTTCTTGGTGAATTTTCATTTTTGTCTGGTTGAACTTATTGAACTTCTTTTTTCTTTTATAATTTAAAGCTTTTTATGGGTCCATATTCCATTATCTGATGCTATGTTCAAGCTCTGTTCTTACTCAATTAGTGTTTGATTCTTAGACTATGCGAGAGAAATATATGGTTGATTGAACTATTAAGGGTAGTGCAATAAGAATGCCTATAACCACTCACCTTTCTTATTTTGAA

mRNA sequence

TGTCATTCCATCTCCTCCGAGCAGCCGAAACCCTAGAGTGTGTGTGTGAGAGAGAGAGAGGGAGAGATCCGCCATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGACATGTCAGTGCCGGACATGGTAGAATCGGCAAACACCGAAAGCATCCTGGTGGTCGGGGAAACGCCGGAGGTATGCACCACCACCGGATTCTCTTCGATAAGTATCACCCTGGTTATTTCGGTAAAGTCGGTATGCGTTATTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTAAACGTTGACAAGATCTGGTCATTGATCCCTCAAGAAGTGAAGGATAAAGCCTCCAAAGACAACGTTCCATTGGTCGATGTTACGCAGTTCGGATATTTCAAGGTTTTGGGCAAGGGTGTCTTACCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTGTCCAAGATCGCCGAGAAGAAGATTAAGGAGGCTGGCGGCGCGGTGGTTCTTACAGCTTAGGTTTGGGTTTCTCTTTGTTATAGAGATTTTTGTTCTTGGTGAATTTTCATTTTTGTCTGGTTGAACTTATTGAACTTCTTTTTTCTTTTATAATTTAAAGCTTTTTATGGGTCCATATTCCATTATCTGATGCTATGTTCAAGCTCTGTTCTTACTCAATTAGTGTTTGATTCTTAGACTATGCGAGAGAAATATATGGTTGATTGAACTATTAAGGGTAGTGCAATAAGAATGCCTATAACCACTCACCTTTCTTATTTTGAA

Coding sequence (CDS)

ATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGACATGTCAGTGCCGGACATGGTAGAATCGGCAAACACCGAAAGCATCCTGGTGGTCGGGGAAACGCCGGAGGTATGCACCACCACCGGATTCTCTTCGATAAGTATCACCCTGGTTATTTCGGTAAAGTCGGTATGCGTTATTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTAAACGTTGACAAGATCTGGTCATTGATCCCTCAAGAAGTGAAGGATAAAGCCTCCAAAGACAACGTTCCATTGGTCGATGTTACGCAGTTCGGATATTTCAAGGTTTTGGGCAAGGGTGTCTTACCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTGTCCAAGATCGCCGAGAAGAAGATTAAGGAGGCTGGCGGCGCGGTGGTTCTTACAGCTTAG

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPIVVKAKLVSKIAEKKIKEAGGAVVLTA

Homology

[Close]

BLAST of IVF0010193 vs. ExPASy Swiss-Prot
Match: P49637 (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 271.9 bits (694), Expect = 4.1e-72
Identity = 129/146 (88.36%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. ExPASy Swiss-Prot
Match: Q9LR33 (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-70
Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. ExPASy Swiss-Prot
Match: P48160 (60S ribosomal protein L27a OS=Dictyostelium discoideum OX=44689 GN=rpl27a PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.8e-50
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPGYFGK+GMR+
Sbjct: 1   MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           FH LRN+++CP V+++KIW+L+P+ V+   +  N    P+VDVTQ G+FKVLG G+LP  
Sbjct: 61  FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 120

Query: 121 QPIVVKAKLVSKIAEKKIKEAGGAVVLTA 147
           QPI+VKA+  SK+AEKKIK  GGA +L A
Sbjct: 121 QPIIVKARYFSKVAEKKIKAVGGACILVA 148

[Close]

BLAST of IVF0010193 vs. ExPASy Swiss-Prot
Match: O01358 (60S ribosomal protein L27a OS=Oscheius tipulae OX=141969 GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-49
Identity = 96/146 (65.75%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M    +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKYHPGYFGKVGMR 
Sbjct: 1   MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FH  +N  YCP VNVD++W+L+P+E K K S +  P++D  + GYFKVLGKG+LP+ QP+
Sbjct: 61  FHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPL 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           +VKAK  S  AE KIK AGGA +L A
Sbjct: 121 IVKAKFFSHEAENKIKAAGGACILVA 145

[Close]

BLAST of IVF0010193 vs. ExPASy Swiss-Prot
Match: Q56K03 (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 195.7 bits (496), Expect = 3.7e-49
Identity = 95/149 (63.76%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           +H  RN+ +CP VN+DK+W+L+ ++ +  A+K+     P++DV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPIVVKAKLVSKIAEKKIKEAGGAVVLTA 147
           QP++VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of IVF0010193 vs. ExPASy TrEMBL
Match: A0A6J1J3M5 (60S ribosomal protein L27a-3 OS=Cucurbita maxima OX=3661 GN=LOC111483090 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.5e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. ExPASy TrEMBL
Match: A0A6J1GZL8 (60S ribosomal protein L27a-3 OS=Cucurbita moschata OX=3662 GN=LOC111458930 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.5e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. ExPASy TrEMBL
Match: A0A5D3CUR0 (60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001380 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.5e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. ExPASy TrEMBL
Match: A0A0A0KQ56 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598710 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.5e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. ExPASy TrEMBL
Match: A0A1S3BF89 (60S ribosomal protein L27a-3 OS=Cucumis melo OX=3656 GN=LOC103488974 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.5e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. NCBI nr
Match: XP_008446169.1 (PREDICTED: 60S ribosomal protein L27a-3 [Cucumis melo] >XP_022945883.1 60S ribosomal protein L27a-3 [Cucurbita moschata] >XP_022957581.1 60S ribosomal protein L27a-3 [Cucurbita moschata] >XP_022966982.1 60S ribosomal protein L27a-3 [Cucurbita maxima] >XP_022984987.1 60S ribosomal protein L27a-3 [Cucurbita maxima] >XP_023523163.1 60S ribosomal protein L27a-3 [Cucurbita pepo subsp. pepo] >XP_023541079.1 60S ribosomal protein L27a-3 [Cucurbita pepo subsp. pepo] >XP_031741794.1 60S ribosomal protein L27a-3 [Cucumis sativus] >KAA0034278.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa] >KAG6573714.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012791.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6601534.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KGN51763.1 hypothetical protein Csa_007887 [Cucumis sativus])

HSP 1 Score: 295 bits (754), Expect = 1.30e-100
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. NCBI nr
Match: XP_038891740.1 (60S ribosomal protein L27a-3-like [Benincasa hispida])

HSP 1 Score: 293 bits (751), Expect = 3.74e-100
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146
           VVKAKLVSKIAEKKIKEAGG+VVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGSVVLTA 146

[Close]

BLAST of IVF0010193 vs. NCBI nr
Match: KAG7032307.1 (60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292 bits (747), Expect = 1.52e-99
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146
           VVKAKLVSKIAEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. NCBI nr
Match: XP_010102488.1 (60S ribosomal protein L27a-3 [Morus notabilis] >XP_010113107.1 60S ribosomal protein L27a-3 [Morus notabilis] >EXB93552.1 hypothetical protein L484_014543 [Morus notabilis] >EXC65297.1 hypothetical protein L484_000089 [Morus notabilis])

HSP 1 Score: 290 bits (743), Expect = 6.21e-99
Identity = 139/146 (95.21%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WS++PQ+VKDKASKDNVPL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. NCBI nr
Match: XP_022151906.1 (60S ribosomal protein L27a-3 [Momordica charantia])

HSP 1 Score: 290 bits (743), Expect = 6.21e-99
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKG LPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146
           VVKAKLVSK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKNAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. TAIR 10
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-73
Identity = 129/146 (88.36%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. TAIR 10
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-71
Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of IVF0010193 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-30
Identity = 79/145 (54.48%), Postives = 84/145 (57.93%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYC IVN+DK+WS+                          VLGKG LPEN+P+
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSM--------------------------VLGKGFLPENKPV 100

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLT 146
           VVKAKLVS   EKKIKEAG AVVLT
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVVLT 100

The following BLAST results are available for this feature:

BLAST of IVF0010193 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49637	4.1e-72	88.36	60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=...	[more]
Q9LR33	1.7e-70	86.99	60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=...	[more]
P48160	5.8e-50	64.43	60S ribosomal protein L27a OS=Dictyostelium discoideum OX=44689 GN=rpl27a PE=3 S...	[more]
O01358	1.7e-49	65.75	60S ribosomal protein L27a OS=Oscheius tipulae OX=141969 GN=rpl-27a PE=3 SV=1	[more]
Q56K03	3.7e-49	63.76	60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3	[more]

BLAST of IVF0010193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3M5	7.5e-77	100.00	60S ribosomal protein L27a-3 OS=Cucurbita maxima OX=3661 GN=LOC111483090 PE=3 SV...	[more]
A0A6J1GZL8	7.5e-77	100.00	60S ribosomal protein L27a-3 OS=Cucurbita moschata OX=3662 GN=LOC111458930 PE=3 ...	[more]
A0A5D3CUR0	7.5e-77	100.00	60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0KQ56	7.5e-77	100.00	Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A1S3BF89	7.5e-77	100.00	60S ribosomal protein L27a-3 OS=Cucumis melo OX=3656 GN=LOC103488974 PE=3 SV=1	[more]

BLAST of IVF0010193 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446169.1	1.30e-100	100.00	PREDICTED: 60S ribosomal protein L27a-3 [Cucumis melo] >XP_022945883.1 60S ribos...	[more]
XP_038891740.1	3.74e-100	99.32	60S ribosomal protein L27a-3-like [Benincasa hispida]	[more]
KAG7032307.1	1.52e-99	99.32	60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_010102488.1	6.21e-99	95.21	60S ribosomal protein L27a-3 [Morus notabilis] >XP_010113107.1 60S ribosomal pro...	[more]
XP_022151906.1	6.21e-99	98.63	60S ribosomal protein L27a-3 [Momordica charantia]	[more]

BLAST of IVF0010193 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70600.1	2.9e-73	88.36	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G23290.1	1.2e-71	86.99	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G12960.1	2.3e-30	54.48	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 58..146 e-value: 1.0E-39 score: 136.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR11721:SF21	60S RIBOSOMAL PROTEIN L27A-3	coord: 1..146
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..146
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..143 e-value: 3.3E-20 score: 73.1
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 107..139
IPR030878	Ribosomal protein L15	HAMAP	MF_01341	Ribosomal_L15	coord: 1..145 score: 11.983838
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 6..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010193.1	IVF0010193.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome