IVF0010166 (gene) Melon (IVF77) v1

Overview


Name	IVF0010166
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Serine/arginine repetitive matrix protein 1-like
Location	chr11: 25688599 .. 25689366 (+)
RNA-Seq Expression	IVF0010166
Synteny	IVF0010166

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAAAAAATCTTTACCAGTCATTCACACTCTCGCCAGAACGAAACCCCACCGAAACTCCGATCCAATTTCCATCATGTCAACGCCCCACCGGTCACTCCCGTCCAACGCTTCTCCCGAAACCCTAACCCTAACCCTAACACTAACCCAACCCAACAATCAAACCGATCAACTTCATTTCACCGACGAAGACGAAATCAATCTCCTGAAGTCCTACCTCCAAATCTCCAGATCCGAAAACCCCACAAAGAATTCTCTCCCCACTCTCGATTCTCCGGCCTTCGACCGCCTTCAGACCGCCGTCGGCCCCAAATTCTCACACTCCGTCATCGCCGATAAGCTCCACCGCCTCAAACTCCTGTACCACAAATTCGCAAGAACAAAGTCCTTCATCAAAACTCCTCACCAACGTCAGATCCTCGACCTCGGCCGCAGCATCTGGGGAAAATCCCCCACACCTATAACAAGAAAACCACAGGTAATTTCACCTTCAAGGATACTTTCACGAAGAATCAAACAGAGATCAAGCACTAGAAAAGAAGGGGTTGGGGTGGATATTGATCTGAAGAACTTTCCTGTTCTTGTGGCTGAATTTTCTCAGCAGTTTCCGGGGAATGGGGTGTGGAGAGAAGGGCTGAGGAGAATGGAGGAGAAGAATTTGAAGGATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAGGCAAGAAGGGCTGCTTTATTAAAGCAGCAACTTAAGAACTACAGAGACTAA

mRNA sequence

ATGACTAAAAAATCTTTACCAGTCATTCACACTCTCGCCAGAACGAAACCCCACCGAAACTCCGATCCAATTTCCATCATGTCAACGCCCCACCGGTCACTCCCGTCCAACGCTTCTCCCGAAACCCTAACCCTAACCCTAACACTAACCCAACCCAACAATCAAACCGATCAACTTCATTTCACCGACGAAGACGAAATCAATCTCCTGAAGTCCTACCTCCAAATCTCCAGATCCGAAAACCCCACAAAGAATTCTCTCCCCACTCTCGATTCTCCGGCCTTCGACCGCCTTCAGACCGCCGTCGGCCCCAAATTCTCACACTCCGTCATCGCCGATAAGCTCCACCGCCTCAAACTCCTGTACCACAAATTCGCAAGAACAAAGTCCTTCATCAAAACTCCTCACCAACGTCAGATCCTCGACCTCGGCCGCAGCATCTGGGGAAAATCCCCCACACCTATAACAAGAAAACCACAGGTAATTTCACCTTCAAGGATACTTTCACGAAGAATCAAACAGAGATCAAGCACTAGAAAAGAAGGGGTTGGGGTGGATATTGATCTGAAGAACTTTCCTGTTCTTGTGGCTGAATTTTCTCAGCAGTTTCCGGGGAATGGGGTGTGGAGAGAAGGGCTGAGGAGAATGGAGGAGAAGAATTTGAAGGATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAGGCAAGAAGGGCTGCTTTATTAAAGCAGCAACTTAAGAACTACAGAGACTAA

Coding sequence (CDS)

ATGACTAAAAAATCTTTACCAGTCATTCACACTCTCGCCAGAACGAAACCCCACCGAAACTCCGATCCAATTTCCATCATGTCAACGCCCCACCGGTCACTCCCGTCCAACGCTTCTCCCGAAACCCTAACCCTAACCCTAACACTAACCCAACCCAACAATCAAACCGATCAACTTCATTTCACCGACGAAGACGAAATCAATCTCCTGAAGTCCTACCTCCAAATCTCCAGATCCGAAAACCCCACAAAGAATTCTCTCCCCACTCTCGATTCTCCGGCCTTCGACCGCCTTCAGACCGCCGTCGGCCCCAAATTCTCACACTCCGTCATCGCCGATAAGCTCCACCGCCTCAAACTCCTGTACCACAAATTCGCAAGAACAAAGTCCTTCATCAAAACTCCTCACCAACGTCAGATCCTCGACCTCGGCCGCAGCATCTGGGGAAAATCCCCCACACCTATAACAAGAAAACCACAGGTAATTTCACCTTCAAGGATACTTTCACGAAGAATCAAACAGAGATCAAGCACTAGAAAAGAAGGGGTTGGGGTGGATATTGATCTGAAGAACTTTCCTGTTCTTGTGGCTGAATTTTCTCAGCAGTTTCCGGGGAATGGGGTGTGGAGAGAAGGGCTGAGGAGAATGGAGGAGAAGAATTTGAAGGATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAGGCAAGAAGGGCTGCTTTATTAAAGCAGCAACTTAAGAACTACAGAGACTAA

Protein sequence

MTKKSLPVIHTLARTKPHRNSDPISIMSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNSLPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRSIWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGNGVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQLKNYRD

Homology

[Close]

BLAST of IVF0010166 vs. ExPASy TrEMBL
Match: A0A5A7T6T1 (Serine/arginine repetitive matrix protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1754G00170 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.8e-124
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 27  MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS 86
           MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS
Sbjct: 1   MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS 60

Query: 87  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 146
           LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS
Sbjct: 61  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 120

Query: 147 IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN 206
           IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN
Sbjct: 121 IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN 180

Query: 207 GVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQLKNYRD 256
           GVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQLKNYRD
Sbjct: 181 GVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQLKNYRD 229

[Close]

BLAST of IVF0010166 vs. ExPASy TrEMBL
Match: A0A0A0KAX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148320 PE=3 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 5.4e-107
Identity = 202/225 (89.78%), Postives = 210/225 (93.33%), Query Frame = 0


Query: 27  MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS 86
           MST HRS PS+ASPE      TLTQ NNQ DQLHF DEDEINLL SYLQISRSENPTKNS
Sbjct: 1   MSTLHRSPPSSASPE------TLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNS 60

Query: 87  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 146
           LPTLDS AFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS
Sbjct: 61  LPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 120

Query: 147 IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN 206
           IWGKSPTP+TRKPQVISPSR+LSRRIKQRS TRKEGVGVD+DLKNFPVLVAEFS+QFPGN
Sbjct: 121 IWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGN 180

Query: 207 GVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQLK 252
           GVWR+GLRRM EKNLKDMNEKWVLLHIEGAELKARRAALLK+QL+
Sbjct: 181 GVWRDGLRRMNEKNLKDMNEKWVLLHIEGAELKARRAALLKEQLR 219

[Close]

BLAST of IVF0010166 vs. ExPASy TrEMBL
Match: A0A6P3Z773 (probable transcription factor At1g61730 OS=Ziziphus jujuba OX=326968 GN=LOC107410682 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.3e-31
Identity = 93/242 (38.43%), Postives = 138/242 (57.02%), Query Frame = 0


Query: 21  SDPISIMSTPHRSLPSNASPETLTLTLTLTQPNNQT--------------DQLHFTDEDE 80
           S PI++ S+  R+ PS+ SP T T T    QP++ +               Q  FT+EDE
Sbjct: 2   STPINLRSSSKRNKPSSNSPTTTTNT---KQPSSSSRSPPEQFSGSQKIRPQRLFTEEDE 61

Query: 81  INLLKSYLQISRSENPTKNSLPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFA 140
            +LL+ +  I++S  P+      ++SP  DR++ ++G +FSH+ I DKL RL+L YHK A
Sbjct: 62  THLLQIFYHITKSSPPSS----AINSPNLDRIEKSLGLRFSHTQIIDKLRRLRLKYHKQA 121

Query: 141 RTKSFIKTPHQRQILDLGRSIWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVD 200
           RTKS IKT H R++  + R IWG+            S SR   +  +++    ++ +G D
Sbjct: 122 RTKSLIKTHHDREVYKIARKIWGRKG----------SNSR-GGKTEEEKEKEEEQRIG-D 181

Query: 201 IDLKNFPVLVAEFSQQFPGNGVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALL 249
           + L+ FPVL  E      GN VW++GL  +EEK LK +NEKW+LL +E AE+ A RA L 
Sbjct: 182 VGLEEFPVLKHEAFGVLQGNVVWKKGLMGLEEKTLKGLNEKWMLLKMEEAEVMATRAELE 224

[Close]

BLAST of IVF0010166 vs. ExPASy TrEMBL
Match: A0A2H5MZL8 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_281630 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.3e-31
Identity = 79/214 (36.92%), Postives = 128/214 (59.81%), Query Frame = 0


Query: 46  TLTLTQPNNQTDQLHFTDEDEINLLKSYLQI-----SRSENPTKNSLPTLDSPAFDRLQT 105
           T  ++ P +Q  ++ FTD DEI LLK + ++     S S + T NS  TLDS +F+R+ +
Sbjct: 13  TSPVSSPTSQNGRV-FTDSDEIRLLKIFKKLAEQNRSSSSSSTPNSTITLDSSSFNRINS 72

Query: 106 AVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRSIWGKSPTPITRKPQ 165
           ++G KF+H+ I DK+ RL++ YHK AR+KS +KTPH + +  + + IWGK  T   ++ +
Sbjct: 73  SLGSKFTHAQITDKIRRLRVKYHKQARSKSLVKTPHDQALFKIAQLIWGKKKTNRKKEAK 132

Query: 166 VISPSRIL-----SRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGNGVWREGLRR 225
            +  S            K   +  +E  G ++D   +PVL  E S+  P N VWRE L+ 
Sbjct: 133 KVQNSASADDEDEGEEQKNEQNEEREREGAELD--EYPVLAGELSKYLPMNLVWREALKS 192

Query: 226 MEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQ 250
           +    LK+MN+KW+L+ IE A++ +++A L+K+Q
Sbjct: 193 LGNDKLKEMNDKWMLIGIEEAKIVSKKADLVKEQ 223

[Close]

BLAST of IVF0010166 vs. ExPASy TrEMBL
Match: A0A5J5C8J5 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_001981 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-30
Identity = 99/245 (40.41%), Postives = 134/245 (54.69%), Query Frame = 0


Query: 15  TKPHRNSDPISIMSTP-----HRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINL 74
           T   R   P S  +TP     H+S    ASPE      T+T P +Q  +L FT+EDEI L
Sbjct: 10  TSSKRRRKPSSSATTPPAENLHKS--PVASPE----KQTITNPKSQRHRL-FTEEDEIRL 69

Query: 75  LKSYLQISRSENPTKNSLPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTK 134
           LK++L+ ++S   TK+S   L S         +G +FS S I DKL RL+  YHK ARTK
Sbjct: 70  LKAFLRTTKS---TKSSTTPLSS--------LIGGQFSDSQITDKLRRLRQRYHKLARTK 129

Query: 135 SFIKTPHQRQILDLGRSIWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDL 194
           SFIKTPH RQI ++   IWGK  T  +      SP R      +   +  + G   ++ L
Sbjct: 130 SFIKTPHDRQIYEIAGKIWGKKATNSS------SPDRNPGESTENPKNIEENGAYGEVGL 189

Query: 195 KNFPVLVAEFSQQFPGNGVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQ 254
           +NFPVL  E  + FP N V+REGL+ +    L+ +NEKW+   +E A L A+RA L  +Q
Sbjct: 190 ENFPVLRREVDRIFPENAVYREGLKFLGRSKLRGLNEKWMEQRMEEAGLAAKRAQLNYEQ 230

[Close]

BLAST of IVF0010166 vs. NCBI nr
Match: KAA0037301.1 (serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa] >TYK24183.1 serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 452 bits (1162), Expect = 1.27e-159
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 27  MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS 86
           MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS
Sbjct: 1   MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS 60

Query: 87  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 146
           LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS
Sbjct: 61  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 120

Query: 147 IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN 206
           IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN
Sbjct: 121 IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN 180

Query: 207 GVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQLKNYRD 255
           GVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQLKNYRD
Sbjct: 181 GVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQLKNYRD 229

[Close]

BLAST of IVF0010166 vs. NCBI nr
Match: KGN46890.1 (hypothetical protein Csa_020607 [Cucumis sativus])

HSP 1 Score: 395 bits (1015), Expect = 3.07e-137
Identity = 202/225 (89.78%), Postives = 210/225 (93.33%), Query Frame = 0


Query: 27  MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS 86
           MST HRS PS+ASPETLT      Q NNQ DQLHF DEDEINLL SYLQISRSENPTKNS
Sbjct: 1   MSTLHRSPPSSASPETLT------QSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNS 60

Query: 87  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 146
           LPTLDS AFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS
Sbjct: 61  LPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 120

Query: 147 IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN 206
           IWGKSPTP+TRKPQVISPSR+LSRRIKQRS TRKEGVGVD+DLKNFPVLVAEFS+QFPGN
Sbjct: 121 IWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGN 180

Query: 207 GVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQLK 251
           GVWR+GLRRM EKNLKDMNEKWVLLHIEGAELKARRAALLK+QL+
Sbjct: 181 GVWRDGLRRMNEKNLKDMNEKWVLLHIEGAELKARRAALLKEQLR 219

[Close]

BLAST of IVF0010166 vs. NCBI nr
Match: KAG6570827.1 (hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281 bits (720), Expect = 1.16e-92
Identity = 151/225 (67.11%), Postives = 177/225 (78.67%), Query Frame = 0


Query: 27  MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS 86
           MSTPHR  PSNASPETLT               HF++EDE+NLL  YLQI+RS NPT NS
Sbjct: 1   MSTPHRFPPSNASPETLT---------------HFSEEDELNLLNCYLQIARSANPTSNS 60

Query: 87  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 146
            PTLDSPA DR++TA+ PKF++S IADKLHRLKL YHK ARTKS IKTPH R+IL++GRS
Sbjct: 61  QPTLDSPALDRIETALRPKFTYSHIADKLHRLKLQYHKLARTKSLIKTPHHRRILEIGRS 120

Query: 147 IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN 206
           IWGK PT  T KPQ I   R + RRIKQRS + K+GV    DL +FPVL++EFS++FPGN
Sbjct: 121 IWGKPPTSRT-KPQAIL--RAIPRRIKQRSGSSKKGV----DLNDFPVLLSEFSRRFPGN 180

Query: 207 GVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQLK 251
           GVW+EGLR MEEK+L+DMNEKWVLLHIE AELKARRAALL++QL+
Sbjct: 181 GVWKEGLRGMEEKSLRDMNEKWVLLHIEEAELKARRAALLQKQLR 203

[Close]

BLAST of IVF0010166 vs. NCBI nr
Match: KAG6606028.1 (hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253 bits (647), Expect = 1.98e-81
Identity = 145/227 (63.88%), Postives = 170/227 (74.89%), Query Frame = 0


Query: 27  MSTPHRSLPSN---ASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPT 86
           MSTP RS PS    AS +     LT +Q N    Q+HFTDEDE++LL  YL+++ S    
Sbjct: 1   MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQL--QVHFTDEDELDLLNCYLEVAGS---- 60

Query: 87  KNSLPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDL 146
           KNS PTLDSPA DR+ TA+G KF HS IADKLHRLK+ YHKFARTKSFIKTPH  +IL++
Sbjct: 61  KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSFIKTPHHLRILEI 120

Query: 147 GRSIWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQF 206
           GRSIWGK   P T KPQVIS      RRI+ RS  +K+GV    DLKNFPVLV+EFS+QF
Sbjct: 121 GRSIWGKPHIPRT-KPQVIS------RRIRGRSVAKKKGV----DLKNFPVLVSEFSRQF 180

Query: 207 PGNGVWREGLRRMEEKNLKDMNEKWVLLHIEGAELKARRAALLKQQL 250
           PGNGVWREGL+ MEE +LK MNEKWVLLHIE AELKARR AL+++Q+
Sbjct: 181 PGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKARRVALIQRQI 210

[Close]

BLAST of IVF0010166 vs. NCBI nr
Match: XP_006424433.1 (probable transcription factor At1g11510 [Citrus clementina] >ESR37673.1 hypothetical protein CICLE_v10029167mg [Citrus clementina])

HSP 1 Score: 143 bits (360), Expect = 8.93e-38
Identity = 80/210 (38.10%), Postives = 124/210 (59.05%), Query Frame = 0


Query: 50  TQPNNQTDQLHFTDEDEINLLKSYLQI-----SRSENPTKNSLPTLDSPAFDRLQTAVGP 109
           T PN +     FTD DEI LLK + ++     S S + T NS  TLDS +F+R+ +++G 
Sbjct: 20  TSPNGRV----FTDSDEIRLLKIFKKLAEQNRSSSSSSTPNSTITLDSSSFNRINSSLGS 79

Query: 110 KFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRSIWGKSPTPITRKPQVISP 169
           KF+H+ I DK+ RL++ YHK AR+KS IKTPH + +  + + IWGK  T   ++ + +  
Sbjct: 80  KFTHAQITDKIRRLRVKYHKQARSKSLIKTPHDQALFKIAQLIWGKKKTNRKKEAKKVQN 139

Query: 170 SRILS-----RRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGNGVWREGLRRMEEK 229
           S            K   +  +E  G ++D   +PVL  E S+  P N VWRE L+ +   
Sbjct: 140 SASADDEDEGEEQKNEQNEEREREGAELD--EYPVLAGELSKYLPMNLVWREALKSLGND 199

Query: 230 NLKDMNEKWVLLHIEGAELKARRAALLKQQ 249
            LK+MN+KW+L+ IE A++ +++A L+K+Q
Sbjct: 200 KLKEMNDKWMLIGIEEAKIVSKKADLVKEQ 223

The following BLAST results are available for this feature:

BLAST of IVF0010166 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010166 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6T1	3.8e-124	100.00	Serine/arginine repetitive matrix protein 1-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0KAX7	5.4e-107	89.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148320 PE=3 SV=1	[more]
A0A6P3Z773	8.3e-31	38.43	probable transcription factor At1g61730 OS=Ziziphus jujuba OX=326968 GN=LOC10741...	[more]
A0A2H5MZL8	8.3e-31	36.92	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_281630 PE=3 SV=1	[more]
A0A5J5C8J5	1.9e-30	40.41	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_001981 PE=3 SV=1	[more]

BLAST of IVF0010166 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037301.1	1.27e-159	100.00	serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa] >TYK...	[more]
KGN46890.1	3.07e-137	89.78	hypothetical protein Csa_020607 [Cucumis sativus]	[more]
KAG6570827.1	1.16e-92	67.11	hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6606028.1	1.98e-81	63.88	hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_006424433.1	8.93e-38	38.10	probable transcription factor At1g11510 [Citrus clementina] >ESR37673.1 hypothet...	[more]

BLAST of IVF0010166 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 236..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..37
None	No IPR available	PANTHER	PTHR31662:SF39	SUBFAMILY NOT NAMED	coord: 36..251
IPR007592	GLABROUS1 enhancer-binding protein family	PFAM	PF04504	DUF573	coord: 60..149 e-value: 2.3E-9 score: 37.8
IPR007592	GLABROUS1 enhancer-binding protein family	PANTHER	PTHR31662	BNAANNG10740D PROTEIN-RELATED	coord: 36..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010166.2	IVF0010166.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus