IVF0010155 (gene) Melon (IVF77) v1

Overview


Name	IVF0010155
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L18
Location	chr02: 16498596 .. 16500375 (-)
RNA-Seq Expression	IVF0010155
Synteny	IVF0010155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAACCTAAACCATGGTTTCTTCTTATAACTTTTTCCTGCCTCTCTCTCCAATTGTCTGTTGTGTAGGCGATAGGCGTGTTCTTCCGGCAACCTCACGTAGCCGTTTCCCATCAAGGTCTTCCCGGATCTCTTCTTTTCTCCTTCTCTTTCTTCTTATTTCTTCACTCAATTAACTTCAGAATAGGGTAAATTAGTATTAATTAGGTCAGTGAAAGGATTTAAAGTTCTTTCGGATTTCCAATGGAATGGAGGGTTAGACCACTGTCATTTCTAGATGCATCTAAGATATCTTACATCTTGCTGATGAATTTTGTTTCTAATTTGTTTTCCTTTTCTTTTGAAACCGTTTATTGGGTTCAGTATGTTGCTAGAATTGTTGATAGTATAGGAATGTAATGAGCATTGTTTGTTACCATGATTGGGAGTTTCACTTTTCTCTTTCAGCTTGGGGGAATTATTTGAGGGGCTTGCTCAAAGTGGCTACCCCGATTCTATAATGTTGAATGTATGTGGGAAAATTCGATACTGCTGTTTTCAGTTTGGATTTATGTTTATGAGTTTTTTGAACCTTTTGGAAAACACTTTGCAGTGGCCATAGTGGGTAGAGTTTCCTGAATTTGGCTTGGGTCTTTGCAAATTGAAACCATGAGGAACCGGGCACAATATAAGCACAAATTAGTCGAAACTGAATCAGTTAAATCAAACCCACTAGTGTTGTTGAAAATTGGGTCCGTCTAATCCATGCTCATTGGTTTTGTTGTCCATTTTCACTACTAATATTCATTTAGCGAAAAATTTTTGCAAAATAGAACTAATGTATGTATACCTTGGTCTTATGAATGATGCTATTTTAAATCTTTCAAGAACAATTGCCCTTTTTATTTGTTGCTACTAATAGTATAGCATAACCATTACCCATTTCCATTACTTGGAAAGCTAGGACTATCAAACAATGATTTGTTTAGATGCCCATGTGTCACTTATCTTTTTTGTATTTATGTGTTAGGATTCACTTCGCTTGATCGGAGGTGGTTTTTGTTCTTTCATTTTCTTTTTCTCTACGAAAGTTTGTTTTTAAGGGAAAAATGATGAATGAAAATAGGGAAAACAATAGTATTTGAACAAATATATTAATGAAGAACTAACCGAGTGGTAGCTTAGCTTAAGCTTGAGAGGATTGAAGATTCTGATATTCACCCTTACTTGTGTTGTTTAGAGTATAATTGAGTTGGAGTAGTCAAGGGAGATGGTGATTCCTCCTCCTATCAAGCCACCAAGATTAATCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCACTGTTGCTTCGGCCGCAAGCTCACAAGAGAAGGCATTGCGGTCAAGTATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGATCCTTTTTTTTTTTTTTCTTTTTCCAATTTGCTTCATTTTGGCCCTCCTTGTTATCTGGTTTAAGTGTTGGGCTTCATCAATCAATGCTCAATATTATCTGAATTTGTATTGCCAATGGGATGAGATGCATTGTTGGACTTTTTGTCAAATTATAAATCTGAAACTTAGAGTTCTTTCCCGCTGAA

mRNA sequence

ATAAAACCTAAACCATGGTTTCTTCTTATAACTTTTTCCTGCCTCTCTCTCCAATTGTCTGTTGTGTAGGCGATAGGCGTGTTCTTCCGGCAACCTCACGTAGCCGTTTCCCATCAAGAGTATAATTGAGTTGGAGTAGTCAAGGGAGATGGTGATTCCTCCTCCTATCAAGCCACCAAGATTAATCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCACTGTTGCTTCGGCCGCAAGCTCACAAGAGAAGGCATTGCGGTCAAGTATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGATCCTTTTTTTTTTTTTTCTTTTTCCAATTTGCTTCATTTTGGCCCTCCTTGTTATCTGGTTTAAGTGTTGGGCTTCATCAATCAATGCTCAATATTATCTGAATTTGTATTGCCAATGGGATGAGATGCATTGTTGGACTTTTTGTCAAATTATAAATCTGAAACTTAGAGTTCTTTCCCGCTGAA

Coding sequence (CDS)

ATGGTGATTCCTCCTCCTATCAAGCCACCAAGATTAATCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCACTGTTGCTTCGGCCGCAAGCTCACAAGAGAAGGCATTGCGGTCAAGTATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGA

Protein sequence

MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL

Homology

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BLAST of IVF0010155 vs. ExPASy Swiss-Prot
Match: A8IAP8 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rplR PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-10
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K + AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+ AV V  +    YHG+VKA+ +  RE G++
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]

BLAST of IVF0010155 vs. ExPASy Swiss-Prot
Match: P52863 (50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-10
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+  V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of IVF0010155 vs. ExPASy Swiss-Prot
Match: B7VLE1 (50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVISANGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+ +V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVASVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of IVF0010155 vs. ExPASy Swiss-Prot
Match: B6EPU1 (50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T +   AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           GI  V       Q YHG+V A+ DS REAG+K
Sbjct: 86  GITNVAFDRSGFQ-YHGRVAALADSAREAGLK 116

[Close]

BLAST of IVF0010155 vs. ExPASy Swiss-Prot
Match: A7MWH4 (50S ribosomal protein L18 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=338187 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+ AV       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVTAVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of IVF0010155 vs. ExPASy TrEMBL
Match: A0A5D3DYC1 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00840 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of IVF0010155 vs. ExPASy TrEMBL
Match: A0A1S3CHJ0 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of IVF0010155 vs. ExPASy TrEMBL
Match: A0A6J1HE21 (uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC111462025 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.0e-50
Identity = 108/114 (94.74%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of IVF0010155 vs. ExPASy TrEMBL
Match: A0A0A0L0Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.4e-49
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of IVF0010155 vs. ExPASy TrEMBL
Match: A0A6J1I0R8 (uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.8e-49
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of IVF0010155 vs. NCBI nr
Match: XP_008462699.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >KAA0046517.1 50S ribosomal protein L18 [Cucumis melo var. makuwa] >TYK28743.1 50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (545), Expect = 9.10e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of IVF0010155 vs. NCBI nr
Match: KAG6590442.1 (hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023978.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208 bits (530), Expect = 1.77e-67
Identity = 108/114 (94.74%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of IVF0010155 vs. NCBI nr
Match: XP_022961444.1 (uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 uncharacterized protein LOC111462025 [Cucurbita moschata])

HSP 1 Score: 208 bits (529), Expect = 2.51e-67
Identity = 108/114 (94.74%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of IVF0010155 vs. NCBI nr
Match: XP_004144339.1 (uncharacterized protein LOC101221233 [Cucumis sativus] >KGN54729.1 hypothetical protein Csa_012115 [Cucumis sativus])

HSP 1 Score: 207 bits (527), Expect = 5.06e-67
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of IVF0010155 vs. NCBI nr
Match: XP_022968817.1 (uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968820.1 uncharacterized protein LOC111467940 [Cucurbita maxima])

HSP 1 Score: 207 bits (526), Expect = 7.20e-67
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of IVF0010155 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 174.5 bits (441), Expect = 4.9e-44
Identity = 90/114 (78.95%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPP ++PPRL  YLKPYVLKMHFTNKFV AQVIHS TATVA +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVKAVIDSVREAG+KLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]

BLAST of IVF0010155 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-10
Identity = 34/101 (33.66%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 11  RLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIG 70
           R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +R+++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGI 112
           KL+ ER +   + AV    ++ ++  GK+  VID+++E GI
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of IVF0010155 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.6e-05
Identity = 29/96 (30.21%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 18  PYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL 77
           P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R 
Sbjct: 197 PFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAVLAQRS 256

Query: 78  LLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKL 114
           L   I  V    ++  K  GK++ V+ ++ + G+ +
Sbjct: 257 LEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNV 292

[Close]

BLAST of IVF0010155 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-05
Identity = 34/111 (30.63%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 16  LKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLL 75
           LK YVL++  + K+++A V+      + + AS+ E  +++S+E  R  +  AAA +G++L
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 76  GERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVIDSVREAGIKLL 115
             RL ++G+       +   +K+E +  G     KV AVI+S+R  G+ L+
Sbjct: 64  AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114

The following BLAST results are available for this feature:

BLAST of IVF0010155 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8IAP8	5.9e-10	44.57	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
P52863	7.8e-10	44.57	50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1	[more]
B7VLE1	1.3e-09	43.48	50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR ...	[more]
B6EPU1	1.7e-09	45.65	50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 G...	[more]
A7MWH4	1.7e-09	44.57	50S ribosomal protein L18 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX...	[more]

BLAST of IVF0010155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYC1	1.1e-51	100.00	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CHJ0	1.1e-51	100.00	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1	[more]
A0A6J1HE21	8.0e-50	94.74	uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A0A0L0Z6	1.4e-49	96.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1	[more]
A0A6J1I0R8	1.8e-49	93.86	uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940...	[more]

BLAST of IVF0010155 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462699.1	9.10e-70	100.00	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >KAA0046517.1 50S ribosomal ...	[more]
KAG6590442.1	1.77e-67	94.74	hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961444.1	2.51e-67	94.74	uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 unchar...	[more]
XP_004144339.1	5.06e-67	96.49	uncharacterized protein LOC101221233 [Cucumis sativus] >KGN54729.1 hypothetical ...	[more]
XP_022968817.1	7.20e-67	93.86	uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharac...	[more]

BLAST of IVF0010155 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27820.1	4.9e-44	78.95	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	2.1e-10	33.66	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	2.6e-05	30.21	Ribosomal L18p/L5e family protein	[more]
AT3G45020.1	3.5e-05	30.63	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 20..113 e-value: 5.3E-17 score: 62.2
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..114
None	No IPR available	GENE3D	3.30.420.100		coord: 11..113 e-value: 2.7E-24 score: 87.8
None	No IPR available	PANTHER	PTHR12899:SF6	OS03G0694800 PROTEIN	coord: 1..114
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 11..111 e-value: 6.61817E-28 score: 96.0699
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 11..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010155.1	IVF0010155.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome