IVF0010090 (gene) Melon (IVF77) v1

Overview


Name	IVF0010090
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr03: 22117691 .. 22118178 (-)
RNA-Seq Expression	IVF0010090
Synteny	IVF0010090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTAAAAATTCTTTTGATCGGTAAATTGGCAAATCTGAACACGAACAGAGGAGGATCAGATTGCCATTACCATCATCGAACGCCTTGTCTTTTCAATTCACTTACAAATTCGTACACTCAAAAAAAGCAATTCGATTCTCCATTGCAAACCCCGAAGAAGATCCCATTATCATCATCAATCAAAAACACAATGTTCATCAATAAAACTAAGACCCAAAACCAGCAAATTCTGCCCATTCTGAAGTTCAGCATATCAGTTTTTAATAATCTTTCTTCCTGTATGTAAACTTTACAACATACTTATATGTACAAGCATCTCTGGTTAGCCCACTCGGCTACGCCACTAACAGCCCTGAAATTGAACTGCTAGCTACAGCTATACGTATGCAGAAGGACAGAGGGAGAGAGAGAGAGAGAGAGACATTGTGTGCCCTGAATCGCACAAACAGGCATTGTAGAAATTTGGTGTGTGGGGGGAGGTGA

mRNA sequence

ATGAAATTAAAAATTCTTTTGATCGGTAAATTGGCAAATCTGAACACGAACAGAGGAGGATCAGATTGCCATTACCATCATCGAACGCCTTGTCTTTTCAATTCACTTACAAATTCGTACACTCAAAAAAAGCAATTCGATTCTCCATTGCAAACCCCGAAGAAGATCCCATTATCATCATCAATCAAAAACACAATCCCACTCGGCTACGCCACTAACAGCCCTGAAATTGAACTGCTAGCTACAGCTATACGTATGCAGAAGGACAGAGGGAGAGAGAGAGAGAGAGAGACATTGTGTGCCCTGAATCGCACAAACAGGCATTGTAGAAATTTGGTGTGTGGGGGGAGGTGA

Coding sequence (CDS)

ATGAAATTAAAAATTCTTTTGATCGGTAAATTGGCAAATCTGAACACGAACAGAGGAGGATCAGATTGCCATTACCATCATCGAACGCCTTGTCTTTTCAATTCACTTACAAATTCGTACACTCAAAAAAAGCAATTCGATTCTCCATTGCAAACCCCGAAGAAGATCCCATTATCATCATCAATCAAAAACACAATCCCACTCGGCTACGCCACTAACAGCCCTGAAATTGAACTGCTAGCTACAGCTATACGTATGCAGAAGGACAGAGGGAGAGAGAGAGAGAGAGAGACATTGTGTGCCCTGAATCGCACAAACAGGCATTGTAGAAATTTGGTGTGTGGGGGGAGGTGA

Protein sequence

MKLKILLIGKLANLNTNRGGSDCHYHHRTPCLFNSLTNSYTQKKQFDSPLQTPKKIPLSSSIKNTIPLGYATNSPEIELLATAIRMQKDRGRERERETLCALNRTNRHCRNLVCGGR

Homology

[Close]

BLAST of IVF0010090 vs. ExPASy TrEMBL
Match: A0A0A0KD93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367160 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 77/119 (64.71%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MKLKI-------LLIGKLANLNTNRGGSDCHYHHRTPCLFNSLTNSYTQKKQFDSPLQTP 60
           MKLKI        LIGKLANLN NRGGS C YHHRTPCLFN LTNSYTQK+QFDSP Q+P
Sbjct: 1   MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60

Query: 61  KKIPLSSSIKNTI------------PLGYATNSPEIELLATAIRMQKDRGRERERETLC 101
           KKI +  + K+              PLGYATNSPEIELLA AIRMQKDR R+RER+ +C
Sbjct: 61  KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVC 119

[Close]

BLAST of IVF0010090 vs. NCBI nr
Match: KGN47670.1 (hypothetical protein Csa_018248 [Cucumis sativus])

HSP 1 Score: 142 bits (358), Expect = 4.86e-41
Identity = 77/119 (64.71%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MKLKILLIGKLANL-------NTNRGGSDCHYHHRTPCLFNSLTNSYTQKKQFDSPLQTP 60
           MKLKI LIGKLANL       N NRGGS C YHHRTPCLFN LTNSYTQK+QFDSP Q+P
Sbjct: 1   MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60

Query: 61  KKIPLSSSIKNTI------------PLGYATNSPEIELLATAIRMQKDRGRERERETLC 100
           KKI +  + K+              PLGYATNSPEIELLA AIRMQKDR R+RER+ +C
Sbjct: 61  KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVC 119

The following BLAST results are available for this feature:

BLAST of IVF0010090 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD93	1.9e-30	64.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367160 PE=4 SV=1	[more]

BLAST of IVF0010090 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47670.1	4.86e-41	64.71	hypothetical protein Csa_018248 [Cucumis sativus]	[more]

BLAST of IVF0010090 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010090.1	IVF0010090.1	mRNA