IVF0010061 (gene) Melon (IVF77) v1

Overview


Name	IVF0010061
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 27489116 .. 27489298 (+)
RNA-Seq Expression	IVF0010061
Synteny	IVF0010061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACAGGGACGTTTAGGGAGTGGCAACATTCGAACATTAAGCGTAGCAGCAGCCAACAACGTCCAAAGACAGGGACATTCAGCGTAGCAAAGGCAGACGACATTCAAGGAGAGGAGACGGGGACAGGGACAAGGACGTTCAACGGTGTACGAAGAAGAGGAAATGGTTTTTGTGTTTGA

mRNA sequence

ATGGGGACAGGGACGTTTAGGGAGTGGCAACATTCGAACATTAAGCGTAGCAGCAGCCAACAACGTCCAAAGACAGGGACATTCAGCGTAGCAAAGGCAGACGACATTCAAGGAGAGGAGACGGGGACAGGGACAAGGACGTTCAACGGTGTACGAAGAAGAGGAAATGGTTTTTGTGTTTGA

Coding sequence (CDS)

ATGGGGACAGGGACGTTTAGGGAGTGGCAACATTCGAACATTAAGCGTAGCAGCAGCCAACAACGTCCAAAGACAGGGACATTCAGCGTAGCAAAGGCAGACGACATTCAAGGAGAGGAGACGGGGACAGGGACAAGGACGTTCAACGGTGTACGAAGAAGAGGAAATGGTTTTTGTGTTTGA

Protein sequence

MGTGTFREWQHSNIKRSSSQQRPKTGTFSVAKADDIQGEETGTGTRTFNGVRRRGNGFCV

Homology

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BLAST of IVF0010061 vs. NCBI nr
Match: TYK27249.1 (hypothetical protein E5676_scaffold244G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 45.4 bits (106), Expect = 5.53e-04
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 3  TGTFREWQHSNIKRSSSQQRPKTGTFSVAKADDIQGEET-----GTGTRT 47
          TGT RE + SN+  S+++ R KTG   VA A+ IQGEET     GTGT T
Sbjct: 40 TGTLREQRCSNVHGSNNRWRSKTGKLRVAAANSIQGEETKETMMGTGTFT 89

The following BLAST results are available for this feature:

BLAST of IVF0010061 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010061 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010061 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27249.1	5.53e-04	52.00	hypothetical protein E5676_scaffold244G00120 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0010061 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010061.2	IVF0010061.2	mRNA