IVF0010052 (gene) Melon (IVF77) v1

Overview


Name	IVF0010052
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Location	chr10: 5332492 .. 5333343 (-)
RNA-Seq Expression	IVF0010052
Synteny	IVF0010052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGTTTCAGAAAAGGAAGATTCCTTTTTACCAAGATCTTTGACAGTGTTTTATCAAGAAAGTCGTAATGAGTCAACCTTCTACAATCGTAAAAACCTCAATATCCAAGTATCGGGTCCTTTCAAATTTAAGGATCTAAAAGTAGTGCCATGGTGGTATTATTATCAAGTTATAATAGGTCCTTCAGTTGATAACATTACAGGAATCAGCGGGATAACCCGAAGTGGAAGATGCTACAAACCAAACAATTTAACAAACCCTTCAGATTGTCTAATACTAGAGCAAGGGAGGAGAAGTGAGAAAAGAAATATGAAGAAGCATTGTAAAGAGCAAGATGTGGAGATGCCTATTATTGCAAAAGATATAGAATACAAAAAGTTTGTCACGGATCAGGAAGCAAATGAATTCTTAAAAATAGTAGAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTCTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAATAAGGCACATGTCGGACATGACAGACATTTCAATGGAATTATTGGAAACATTAAATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCATAAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAATAGATTAGCTCTTAATATAATGCCTAAATCTACACTATTAAAGATTTCAGTGGACATGTCACACATAAAATCAAGTACTATGGTTGTGAAAGATTTTGATGGGTCACGTAGAGAAGTAATGGGTGACATTTAA

mRNA sequence

ATGGATGAAGTTTCAGAAAAGGAAGATTCCTTTTTACCAAGATCTTTGACAGTGTTTTATCAAGAAAGTCGTAATGAGTCAACCTTCTACAATCGTAAAAACCTCAATATCCAAGTATCGGGTCCTTTCAAATTTAAGGATCTAAAAGTAGTGCCATGGTGGTATTATTATCAAGTTATAATAGGTCCTTCAGTTGATAACATTACAGGAATCAGCGGGATAACCCGAAGTGGAAGATGCTACAAACCAAACAATTTAACAAACCCTTCAGATTGTCTAATACTAGAGCAAGGGAGGAGAAGTGAGAAAAGAAATATGAAGAAGCATTGTAAAGAGCAAGATGTGGAGATGCCTATTATTGCAAAAGATATAGAATACAAAAAGTTTGTCACGGATCAGGAAGCAAATGAATTCTTAAAAATAGTAGAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTCTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAATAAGGCACATGTCGGACATGACAGACATTTCAATGGAATTATTGGAAACATTAAATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCATAAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAATAGATTAGCTCTTAATATAATGCCTAAATCTACACTATTAAAGATTTCAGTGGACATGTCACACATAAAATCAAGTACTATGGTTGTGAAAGATTTTGATGGGTCACGTAGAGAAGTAATGGGTGACATTTAA

Coding sequence (CDS)

ATGGATGAAGTTTCAGAAAAGGAAGATTCCTTTTTACCAAGATCTTTGACAGTGTTTTATCAAGAAAGTCGTAATGAGTCAACCTTCTACAATCGTAAAAACCTCAATATCCAAGTATCGGGTCCTTTCAAATTTAAGGATCTAAAAGTAGTGCCATGGTGGTATTATTATCAAGTTATAATAGGTCCTTCAGTTGATAACATTACAGGAATCAGCGGGATAACCCGAAGTGGAAGATGCTACAAACCAAACAATTTAACAAACCCTTCAGATTGTCTAATACTAGAGCAAGGGAGGAGAAGTGAGAAAAGAAATATGAAGAAGCATTGTAAAGAGCAAGATGTGGAGATGCCTATTATTGCAAAAGATATAGAATACAAAAAGTTTGTCACGGATCAGGAAGCAAATGAATTCTTAAAAATAGTAGAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTCTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAATAAGGCACATGTCGGACATGACAGACATTTCAATGGAATTATTGGAAACATTAAATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCATAAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAATAGATTAGCTCTTAATATAATGCCTAAATCTACACTATTAAAGATTTCAGTGGACATGTCACACATAAAATCAAGTACTATGGTTGTGAAAGATTTTGATGGGTCACGTAGAGAAGTAATGGGTGACATTTAA

Protein sequence

MDEVSEKEDSFLPRSLTVFYQESRNESTFYNRKNLNIQVSGPFKFKDLKVVPWWYYYQVIIGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPIIAKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDILNKAHVGHDRHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARVLVDNRLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI

Homology

[Close]

BLAST of IVF0010052 vs. ExPASy TrEMBL
Match: A0A5A7SU99 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00060 PE=4 SV=1)

HSP 1 Score: 569.3 bits (1466), Expect = 8.9e-159
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MDEVSEKEDSFLPRSLTVFYQESRNESTFYNRKNLNIQVSGPFKFKDLKVVPWWYYYQVI 60
           MDEVSEKEDSFLPRSLTVFYQESRNESTFYNRKNLNIQVSGPFKFKDLKVVPWWYYYQVI
Sbjct: 10  MDEVSEKEDSFLPRSLTVFYQESRNESTFYNRKNLNIQVSGPFKFKDLKVVPWWYYYQVI 69

Query: 61  IGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPII 120
           IGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPII
Sbjct: 70  IGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPII 129

Query: 121 AKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDIL 180
           AKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDIL
Sbjct: 130 AKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDIL 189

Query: 181 NKAHVGHDRHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARVLVDN 240
           NKAHVGHDRHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARVLVDN
Sbjct: 190 NKAHVGHDRHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARVLVDN 249

Query: 241 RLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 284
           RLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI
Sbjct: 250 RLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 292

[Close]

BLAST of IVF0010052 vs. ExPASy TrEMBL
Match: A0A5A7VIM6 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001370 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 3.3e-129
Identity = 243/287 (84.67%), Postives = 257/287 (89.55%), Query Frame = 0


Query: 1   MDEVSEKEDSFLPRSLTVFYQESRNEST-FYNRKNLNIQVSGPFKFKDLKVVPWWYYYQV 60
           MDEVSEK+DSFLPR LTVFYQES NEST F N K L IQV  PFKFKDLK VPWWY  QV
Sbjct: 523 MDEVSEKKDSFLPRPLTVFYQESHNESTSFCNLKKLTIQVPSPFKFKDLKAVPWWYDCQV 582

Query: 61  IIGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPI 120
           I GPSVDNITGISGITRSGRCYKP+NLT P D LILEQGR++EK N+K+HCK+QDVEMPI
Sbjct: 583 ITGPSVDNITGISGITRSGRCYKPDNLTVPLDGLILEQGRKNEKTNVKEHCKDQDVEMPI 642

Query: 121 IAKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDI 180
           IAKDIEYKK VTD+EANEFLKIV+QSEYKIIEQMHHTPARISLLS FLNSEPHRKVLLDI
Sbjct: 643 IAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDI 702

Query: 181 LNKAHVGHD---RHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARV 240
           LNKAHVGHD     F+GIIGNI SSN IVFTDD+IP +GLGHTKALHIQVKCKDYVIARV
Sbjct: 703 LNKAHVGHDISMEKFSGIIGNITSSNFIVFTDDKIPPEGLGHTKALHIQVKCKDYVIARV 762

Query: 241 LVDNRLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 284
           LVDN  ALNIMPKSTLLK+ VDMSHIKSSTMVVKDF+GSRREVMGDI
Sbjct: 763 LVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKDFNGSRREVMGDI 809

[Close]

BLAST of IVF0010052 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.6e-128
Identity = 244/287 (85.02%), Postives = 256/287 (89.20%), Query Frame = 0


Query: 1   MDEVSEKEDSFLPRSLTVFYQESRNEST-FYNRKNLNIQVSGPFKFKDLKVVPWWYYYQV 60
           MDEVSEK+DSFLPR LTVFYQES NEST F N K L IQV  PFKFKDLK VPW Y  QV
Sbjct: 342 MDEVSEKKDSFLPRPLTVFYQESHNESTSFCNPKKLTIQVPSPFKFKDLKAVPWRYDCQV 401

Query: 61  IIGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPI 120
           I GPSVDNITGISGITRSGRCYKP+NLT PSD LILEQGR++EKRN+K+HCK+QDVEMPI
Sbjct: 402 ITGPSVDNITGISGITRSGRCYKPDNLTVPSDGLILEQGRKNEKRNVKEHCKDQDVEMPI 461

Query: 121 IAKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDI 180
           IAKDIEYKK VTD+EANEFLKIV+QSEYKIIEQMHHTPARISLLS FLNSEPHRKVLLDI
Sbjct: 462 IAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDI 521

Query: 181 LNKAHVGHD---RHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARV 240
           LNKAHVGHD     F+GIIGNI   NSIVFTDDEIP +GLGHTKALHIQVKCKDYVIARV
Sbjct: 522 LNKAHVGHDISVEKFSGIIGNITPPNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVIARV 581

Query: 241 LVDNRLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 284
           LVDN  ALNIMPKSTLLK+ VDMSHIKSSTMVVK FDGSRREVMGDI
Sbjct: 582 LVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKVFDGSRREVMGDI 628

[Close]

BLAST of IVF0010052 vs. ExPASy TrEMBL
Match: A0A5D3DEB3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00440 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 2.1e-128
Identity = 244/287 (85.02%), Postives = 256/287 (89.20%), Query Frame = 0


Query: 1   MDEVSEKEDSFLPRSLTVFYQESRNEST-FYNRKNLNIQVSGPFKFKDLKVVPWWYYYQV 60
           MDEVSEK+DSFLPR LTVFYQES NEST F N K L IQV  PFKFKDLK VPW Y  QV
Sbjct: 550 MDEVSEKKDSFLPRPLTVFYQESHNESTSFCNPKKLTIQVPSPFKFKDLKAVPWRYDCQV 609

Query: 61  IIGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPI 120
           I GPSVDNITGISGITRSGRCYKP+NLT P D LILEQGR++EK N+K+HCK+QDVEMPI
Sbjct: 610 ITGPSVDNITGISGITRSGRCYKPDNLTVPLDGLILEQGRKNEKTNVKEHCKDQDVEMPI 669

Query: 121 IAKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDI 180
           IAKDIEYKK VTD+EANEFLKIV+QSEYKIIEQMHHTPARISLLS FLNSEPHRKVLLDI
Sbjct: 670 IAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDI 729

Query: 181 LNKAHVGHD---RHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARV 240
           LNKAHVGHD     F+GIIGNI SSNSIVFTDDEIP +GLGHTKALHIQVKCKDYVIARV
Sbjct: 730 LNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVIARV 789

Query: 241 LVDNRLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 284
           LVDN  ALNIMPKSTLLK+ VDMSHIKSSTMVVK FDGSRREVMGDI
Sbjct: 790 LVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREVMGDI 836

[Close]

BLAST of IVF0010052 vs. ExPASy TrEMBL
Match: A0A5A7VIB2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00870 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 4.0e-127
Identity = 240/287 (83.62%), Postives = 256/287 (89.20%), Query Frame = 0


Query: 1   MDEVSEKEDSFLPRSLTVFYQESRNEST-FYNRKNLNIQVSGPFKFKDLKVVPWWYYYQV 60
           MDEV EK+DSFLPR LTVFYQES NEST F N K L IQV  PFKFKDLKVVPWWY  QV
Sbjct: 355 MDEVLEKKDSFLPRPLTVFYQESHNESTIFCNPKKLTIQVPSPFKFKDLKVVPWWYDCQV 414

Query: 61  IIGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPI 120
           I GPSVDNITGISGITRS RCYKP+NLT PSD LILEQGR++EKRN+K+HCK+QDVEMPI
Sbjct: 415 ITGPSVDNITGISGITRSRRCYKPDNLTVPSDGLILEQGRKNEKRNVKEHCKDQDVEMPI 474

Query: 121 IAKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDI 180
           IAKDIEYKK VTD+EANE LKIV+Q+EYKII+QMHHTPARISLLS FLNSEPHRKVLLDI
Sbjct: 475 IAKDIEYKKLVTDEEANELLKIVKQNEYKIIKQMHHTPARISLLSLFLNSEPHRKVLLDI 534

Query: 181 LNKAHVGHD---RHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARV 240
           LNKAHVGHD     F+GII NI SSNSIVFTDDEIP +GLGHT+ALHIQVKCKDYVIARV
Sbjct: 535 LNKAHVGHDISVEKFSGIIENITSSNSIVFTDDEIPPEGLGHTEALHIQVKCKDYVIARV 594

Query: 241 LVDNRLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 284
           LVDNR ALNIMP+STLLK+ VDMSHIKSS MVVK FDGSRREVMGDI
Sbjct: 595 LVDNRSALNIMPESTLLKLPVDMSHIKSSNMVVKAFDGSRREVMGDI 641

[Close]

BLAST of IVF0010052 vs. NCBI nr
Match: KAA0034023.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 566 bits (1460), Expect = 1.48e-203
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MDEVSEKEDSFLPRSLTVFYQESRNESTFYNRKNLNIQVSGPFKFKDLKVVPWWYYYQVI 60
           MDEVSEKEDSFLPRSLTVFYQESRNESTFYNRKNLNIQVSGPFKFKDLKVVPWWYYYQVI
Sbjct: 10  MDEVSEKEDSFLPRSLTVFYQESRNESTFYNRKNLNIQVSGPFKFKDLKVVPWWYYYQVI 69

Query: 61  IGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPII 120
           IGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPII
Sbjct: 70  IGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPII 129

Query: 121 AKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDIL 180
           AKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDIL
Sbjct: 130 AKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDIL 189

Query: 181 NKAHVGHDRHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARVLVDN 240
           NKAHVGHDRHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARVLVDN
Sbjct: 190 NKAHVGHDRHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARVLVDN 249

Query: 241 RLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 283
           RLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI
Sbjct: 250 RLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 292

[Close]

BLAST of IVF0010052 vs. NCBI nr
Match: KAA0067953.1 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 468 bits (1205), Expect = 7.48e-154
Identity = 243/287 (84.67%), Postives = 257/287 (89.55%), Query Frame = 0


Query: 1   MDEVSEKEDSFLPRSLTVFYQESRNEST-FYNRKNLNIQVSGPFKFKDLKVVPWWYYYQV 60
           MDEVSEK+DSFLPR LTVFYQES NEST F N K L IQV  PFKFKDLK VPWWY  QV
Sbjct: 523 MDEVSEKKDSFLPRPLTVFYQESHNESTSFCNLKKLTIQVPSPFKFKDLKAVPWWYDCQV 582

Query: 61  IIGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPI 120
           I GPSVDNITGISGITRSGRCYKP+NLT P D LILEQGR++EK N+K+HCK+QDVEMPI
Sbjct: 583 ITGPSVDNITGISGITRSGRCYKPDNLTVPLDGLILEQGRKNEKTNVKEHCKDQDVEMPI 642

Query: 121 IAKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDI 180
           IAKDIEYKK VTD+EANEFLKIV+QSEYKIIEQMHHTPARISLLS FLNSEPHRKVLLDI
Sbjct: 643 IAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDI 702

Query: 181 LNKAHVGHD---RHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARV 240
           LNKAHVGHD     F+GIIGNI SSN IVFTDD+IP +GLGHTKALHIQVKCKDYVIARV
Sbjct: 703 LNKAHVGHDISMEKFSGIIGNITSSNFIVFTDDKIPPEGLGHTKALHIQVKCKDYVIARV 762

Query: 241 LVDNRLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 283
           LVDN  ALNIMPKSTLLK+ VDMSHIKSSTMVVKDF+GSRREVMGDI
Sbjct: 763 LVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKDFNGSRREVMGDI 809

[Close]

BLAST of IVF0010052 vs. NCBI nr
Match: KAA0066096.1 (uncharacterized protein E6C27_scaffold21G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 461 bits (1187), Expect = 3.32e-152
Identity = 240/287 (83.62%), Postives = 256/287 (89.20%), Query Frame = 0


Query: 1   MDEVSEKEDSFLPRSLTVFYQESRNEST-FYNRKNLNIQVSGPFKFKDLKVVPWWYYYQV 60
           MDEV EK+DSFLPR LTVFYQES NEST F N K L IQV  PFKFKDLKVVPWWY  QV
Sbjct: 355 MDEVLEKKDSFLPRPLTVFYQESHNESTIFCNPKKLTIQVPSPFKFKDLKVVPWWYDCQV 414

Query: 61  IIGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPI 120
           I GPSVDNITGISGITRS RCYKP+NLT PSD LILEQGR++EKRN+K+HCK+QDVEMPI
Sbjct: 415 ITGPSVDNITGISGITRSRRCYKPDNLTVPSDGLILEQGRKNEKRNVKEHCKDQDVEMPI 474

Query: 121 IAKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDI 180
           IAKDIEYKK VTD+EANE LKIV+Q+EYKII+QMHHTPARISLLS FLNSEPHRKVLLDI
Sbjct: 475 IAKDIEYKKLVTDEEANELLKIVKQNEYKIIKQMHHTPARISLLSLFLNSEPHRKVLLDI 534

Query: 181 LNKAHVGHD---RHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARV 240
           LNKAHVGHD     F+GII NI SSNSIVFTDDEIP +GLGHT+ALHIQVKCKDYVIARV
Sbjct: 535 LNKAHVGHDISVEKFSGIIENITSSNSIVFTDDEIPPEGLGHTEALHIQVKCKDYVIARV 594

Query: 241 LVDNRLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 283
           LVDNR ALNIMP+STLLK+ VDMSHIKSS MVVK FDGSRREVMGDI
Sbjct: 595 LVDNRSALNIMPESTLLKLPVDMSHIKSSNMVVKAFDGSRREVMGDI 641

[Close]

BLAST of IVF0010052 vs. NCBI nr
Match: TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 466 bits (1198), Expect = 7.06e-152
Identity = 244/287 (85.02%), Postives = 256/287 (89.20%), Query Frame = 0


Query: 1   MDEVSEKEDSFLPRSLTVFYQESRNEST-FYNRKNLNIQVSGPFKFKDLKVVPWWYYYQV 60
           MDEVSEK+DSFLPR LTVFYQES NEST F N K L IQV  PFKFKDLK VPW Y  QV
Sbjct: 550 MDEVSEKKDSFLPRPLTVFYQESHNESTSFCNPKKLTIQVPSPFKFKDLKAVPWRYDCQV 609

Query: 61  IIGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPI 120
           I GPSVDNITGISGITRSGRCYKP+NLT P D LILEQGR++EK N+K+HCK+QDVEMPI
Sbjct: 610 ITGPSVDNITGISGITRSGRCYKPDNLTVPLDGLILEQGRKNEKTNVKEHCKDQDVEMPI 669

Query: 121 IAKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDI 180
           IAKDIEYKK VTD+EANEFLKIV+QSEYKIIEQMHHTPARISLLS FLNSEPHRKVLLDI
Sbjct: 670 IAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDI 729

Query: 181 LNKAHVGHD---RHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARV 240
           LNKAHVGHD     F+GIIGNI SSNSIVFTDDEIP +GLGHTKALHIQVKCKDYVIARV
Sbjct: 730 LNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVIARV 789

Query: 241 LVDNRLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 283
           LVDN  ALNIMPKSTLLK+ VDMSHIKSSTMVVK FDGSRREVMGDI
Sbjct: 790 LVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREVMGDI 836

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BLAST of IVF0010052 vs. NCBI nr
Match: KAA0036950.1 (uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 455 bits (1171), Expect = 2.09e-149
Identity = 238/287 (82.93%), Postives = 254/287 (88.50%), Query Frame = 0


Query: 1   MDEVSEKEDSFLPRSLTVFYQESRNEST-FYNRKNLNIQVSGPFKFKDLKVVPWWYYYQV 60
           MDEVSE +DSFLPR LTVFYQES NEST F N K L IQV  PFKFKDLK +PW Y  QV
Sbjct: 556 MDEVSENKDSFLPRPLTVFYQESHNESTSFCNPKKLTIQVPSPFKFKDLKAMPWRYDCQV 615

Query: 61  IIGPSVDNITGISGITRSGRCYKPNNLTNPSDCLILEQGRRSEKRNMKKHCKEQDVEMPI 120
           I GP VDNITGISGITRSGRCYKP+NLT PS+ LILEQGR++EKRN K+HCK+QDVEMPI
Sbjct: 616 ITGPLVDNITGISGITRSGRCYKPDNLTVPSNGLILEQGRKNEKRNAKEHCKDQDVEMPI 675

Query: 121 IAKDIEYKKFVTDQEANEFLKIVEQSEYKIIEQMHHTPARISLLSFFLNSEPHRKVLLDI 180
           IAKDIEYKK VTD+EANEFLKIV+QSEYKIIEQMH+TPARISLLS FLNSEPHRK+LLDI
Sbjct: 676 IAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHYTPARISLLSLFLNSEPHRKLLLDI 735

Query: 181 LNKAHVGHD---RHFNGIIGNIKSSNSIVFTDDEIPHKGLGHTKALHIQVKCKDYVIARV 240
           LNKAHVGHD     F+GIIGNI SSNSIVFTDDEIP +GLGHTKALHIQ+KCKDYVIARV
Sbjct: 736 LNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQLKCKDYVIARV 795

Query: 241 LVDNRLALNIMPKSTLLKISVDMSHIKSSTMVVKDFDGSRREVMGDI 283
           LVDN  ALNIMPKSTLL + VDMSHIKSSTMVVK FDGSRREVMGDI
Sbjct: 796 LVDNGSALNIMPKSTLLMLPVDMSHIKSSTMVVKAFDGSRREVMGDI 842

The following BLAST results are available for this feature:

BLAST of IVF0010052 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SU99	8.9e-159	100.00	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G...	[more]
A0A5A7VIM6	3.3e-129	84.67	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
A0A5A7T7R4	1.6e-128	85.02	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282...	[more]
A0A5D3DEB3	2.1e-128	85.02	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VIB2	4.0e-127	83.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0010052 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034023.1	1.48e-203	100.00	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0067953.1	7.48e-154	84.67	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
KAA0066096.1	3.32e-152	83.62	uncharacterized protein E6C27_scaffold21G00870 [Cucumis melo var. makuwa]	[more]
TYK21788.1	7.06e-152	85.02	uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]	[more]
KAA0036950.1	2.09e-149	82.93	uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0010052 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33240:SF7	GAG-PRO-LIKE PROTEIN	coord: 20..283
None	No IPR available	PANTHER	PTHR33240	OS08G0508500 PROTEIN	coord: 20..283

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010052.1	IVF0010052.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity