IVF0010044 (gene) Melon (IVF77) v1

Overview


Name	IVF0010044
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RT_RNaseH domain-containing protein
Location	chr11: 12358326 .. 12358607 (+)
RNA-Seq Expression	IVF0010044
Synteny	IVF0010044

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTGTATGTTAAGTTCTTGAAAGACATTCTAGCGAAGAAACGAAGGATGAATCATTATGAGATCGTAGCTCTATCGCAAGCAACAAGGGATGTCTTCAACAATGGGGCACTAGAGAAGATGACAGACCCTAGAAGCTTCATTATACCATGCTCAATAGGTGGCATGGATCTTGGTCGTGCACAATGCGACCTGGGAGCAAGCATTAATTTAATGTCTCTCTCTATCTTCAAGAAATTAGGGATAGGAGAGGTTCAACCTACACAAATGACGCTCTAA

mRNA sequence

ATGCCTTTGTATGTTAAGTTCTTGAAAGACATTCTAGCGAAGAAACGAAGGATGAATCATTATGAGATCGTAGCTCTATCGCAAGCAACAAGGGATGTCTTCAACAATGGGGCACTAGAGAAGATGACAGACCCTAGAAGCTTCATTATACCATGCTCAATAGGTGGCATGGATCTTGGTCGTGCACAATGCGACCTGGGAGCAAGCATTAATTTAATGTCTCTCTCTATCTTCAAGAAATTAGGGATAGGAGAGGTTCAACCTACACAAATGACGCTCTAA

Coding sequence (CDS)

ATGCCTTTGTATGTTAAGTTCTTGAAAGACATTCTAGCGAAGAAACGAAGGATGAATCATTATGAGATCGTAGCTCTATCGCAAGCAACAAGGGATGTCTTCAACAATGGGGCACTAGAGAAGATGACAGACCCTAGAAGCTTCATTATACCATGCTCAATAGGTGGCATGGATCTTGGTCGTGCACAATGCGACCTGGGAGCAAGCATTAATTTAATGTCTCTCTCTATCTTCAAGAAATTAGGGATAGGAGAGGTTCAACCTACACAAATGACGCTCTAA

Protein sequence

MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLGRAQCDLGASINLMSLSIFKKLGIGEVQPTQMTL

Homology

[Close]

BLAST of IVF0010044 vs. ExPASy TrEMBL
Match: A0A5D3CL71 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00610 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 60
           MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG
Sbjct: 61  MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 120

Query: 61  RAQCDLGASINLMSLSIFKKLGIGEVQPTQMTL 94
           RAQCDLGASINLMSLSIFKKLGIGEVQPTQMTL
Sbjct: 121 RAQCDLGASINLMSLSIFKKLGIGEVQPTQMTL 153

[Close]

BLAST of IVF0010044 vs. ExPASy TrEMBL
Match: A0A5D3BDT2 (RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00330 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.9e-27
Identity = 64/91 (70.33%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 60
          MP Y KFL DILAKKRR+N ++ +AL QAT D++ NG LEKMT P SF +PCSI GMDLG
Sbjct: 1  MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61 RAQCDLGASINLMSLSIFKKLGIGEVQPTQM 92
             CDLGASINLM LSIFKKL I EVQPT M
Sbjct: 61 HVLCDLGASINLMPLSIFKKLKIKEVQPTHM 91

[Close]

BLAST of IVF0010044 vs. ExPASy TrEMBL
Match: A0A1S3BHX3 (uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.9e-27
Identity = 64/91 (70.33%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 60
          MP Y KFL DILAKKRR+N ++ +AL QAT D++ NG LEKMT P SF +PCSI GMDLG
Sbjct: 1  MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61 RAQCDLGASINLMSLSIFKKLGIGEVQPTQM 92
             CDLGASINLM LSIFKKL I EVQPT M
Sbjct: 61 HVLCDLGASINLMPLSIFKKLKIKEVQPTHM 91

[Close]

BLAST of IVF0010044 vs. ExPASy TrEMBL
Match: A0A1S4E2V6 (uncharacterized protein LOC107991723 OS=Cucumis melo OX=3656 GN=LOC107991723 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 66/93 (70.97%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1   MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 60
           MP YVKFLKDILAKK R+N ++ VAL Q T DVF NG   KMTDPRSF+I CSIG MDLG
Sbjct: 56  MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 115

Query: 61  RAQCDLGASINLMSLSIFKKLGIGEVQPTQMTL 94
               DLGASINLM L IFKKL +GEVQPT M L
Sbjct: 116 CVLYDLGASINLMPLYIFKKLEMGEVQPTHMRL 148

[Close]

BLAST of IVF0010044 vs. ExPASy TrEMBL
Match: A0A5A7V2G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001960 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.2e-25
Identity = 65/93 (69.89%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1   MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 60
           MP YVKFLKDILAKK R+N ++ VAL Q T DVF NG   KMTDPRSF+I CSIG MDLG
Sbjct: 97  MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 156

Query: 61  RAQCDLGASINLMSLSIFKKLGIGEVQPTQMTL 94
               DL ASINLM L IFKKL +GEVQPT M L
Sbjct: 157 CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRL 189

[Close]

BLAST of IVF0010044 vs. NCBI nr
Match: TYK11898.1 (uncharacterized protein E5676_scaffold177G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (475), Expect = 6.36e-59
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 60
           MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG
Sbjct: 61  MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 120

Query: 61  RAQCDLGASINLMSLSIFKKLGIGEVQPTQMTL 93
           RAQCDLGASINLMSLSIFKKLGIGEVQPTQMTL
Sbjct: 121 RAQCDLGASINLMSLSIFKKLGIGEVQPTQMTL 153

[Close]

BLAST of IVF0010044 vs. NCBI nr
Match: XP_008447648.1 (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 129 bits (325), Expect = 1.23e-35
Identity = 64/91 (70.33%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 60
          MP Y KFL DILAKKRR+N ++ +AL QAT D++ NG LEKMT P SF +PCSI GMDLG
Sbjct: 1  MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61 RAQCDLGASINLMSLSIFKKLGIGEVQPTQM 91
             CDLGASINLM LSIFKKL I EVQPT M
Sbjct: 61 HVLCDLGASINLMPLSIFKKLKIKEVQPTHM 91

[Close]

BLAST of IVF0010044 vs. NCBI nr
Match: XP_016902557.1 (PREDICTED: uncharacterized protein LOC107991723 [Cucumis melo])

HSP 1 Score: 126 bits (317), Expect = 1.80e-34
Identity = 66/93 (70.97%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1   MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 60
           MP YVKFLKDILAKK R+N ++ VAL Q T DVF NG   KMTDPRSF+I CSIG MDLG
Sbjct: 56  MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 115

Query: 61  RAQCDLGASINLMSLSIFKKLGIGEVQPTQMTL 93
               DLGASINLM L IFKKL +GEVQPT M L
Sbjct: 116 CVLYDLGASINLMPLYIFKKLEMGEVQPTHMRL 148

[Close]

BLAST of IVF0010044 vs. NCBI nr
Match: KAA0035429.1 (uncharacterized protein E6C27_scaffold285G00480 [Cucumis melo var. makuwa] >TYK25723.1 uncharacterized protein E5676_scaffold862G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 2.92e-33
Identity = 62/85 (72.94%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 1  MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 60
          M  Y+KFLKDILAKKR++N +E VAL+QAT D F NG  EKMTDPRSF +  S GGMDLG
Sbjct: 1  MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60

Query: 61 RAQCDLGASINLMSLSIFKKLGIGE 85
           A CDLGASINLM LSIFKK+GIGE
Sbjct: 61 CALCDLGASINLMPLSIFKKVGIGE 85

[Close]

BLAST of IVF0010044 vs. NCBI nr
Match: KAA0037872.1 (uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98010.1 uncharacterized protein E5676_scaffold487G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 4.92e-33
Identity = 64/91 (70.33%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MPLYVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLG 60
          MP Y KFL DILAKKRR+N ++ +AL QAT D++ NG LEKMT P SF +PCSI GMDLG
Sbjct: 1  MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61 RAQCDLGASINLMSLSIFKKLGIGEVQPTQM 91
             CDLGASINLM LSIFKKL I EVQPT M
Sbjct: 61 HVLCDLGASINLMPLSIFKKLKIKEVQPTHM 91

The following BLAST results are available for this feature:

BLAST of IVF0010044 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010044 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CL71	1.8e-44	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDT2	5.9e-27	70.33	RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3BHX3	5.9e-27	70.33	uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=...	[more]
A0A1S4E2V6	3.8e-26	70.97	uncharacterized protein LOC107991723 OS=Cucumis melo OX=3656 GN=LOC107991723 PE=...	[more]
A0A5A7V2G5	3.2e-25	69.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0010044 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11898.1	6.36e-59	100.00	uncharacterized protein E5676_scaffold177G00610 [Cucumis melo var. makuwa]	[more]
XP_008447648.1	1.23e-35	70.33	PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo]	[more]
XP_016902557.1	1.80e-34	70.97	PREDICTED: uncharacterized protein LOC107991723 [Cucumis melo]	[more]
KAA0035429.1	2.92e-33	72.94	uncharacterized protein E6C27_scaffold285G00480 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0037872.1	4.92e-33	70.33	uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98...	[more]

BLAST of IVF0010044 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 27..93 e-value: 8.0E-10 score: 40.5
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 4..93
None	No IPR available	PANTHER	PTHR33067:SF17	SUBFAMILY NOT NAMED	coord: 4..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010044.1	IVF0010044.1	mRNA