IVF0009989 (gene) Melon (IVF77) v1

Overview
NameIVF0009989
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionATP synthase subunit alpha
Locationchr07: 4100501 .. 4100832 (+)
RNA-Seq ExpressionIVF0009989
SyntenyIVF0009989
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGAGTCCTATCTGTAGGAGATGGAATTGCCCGAGTTTATGGATTGAAGGAGATTCAAGCTGTGGAAATGGTGGAATTTTCCAATGGTGTCAAAGGAATAGCCTTAAATCTTGAGAATGATAATGTAGGGATTGTTGTCTTTGGTAGTGATACCGTTATTAAGGAAGGTGATCTTGTCAAGTGCACTGGATCGATTGTGGATGTTCCGGTAGGAAAGGCTATGTTCGGGCGTGTGGTCGACACCTTGGGAGCACCCATTGATGGAAGAGAGGCTCTCAGCGATCACGAGCAAAGACATGTTGAAGTGAAAGCCCCTGGGATTATTGA

mRNA sequence

ATGGGTCGAGTCCTATCTGTAGGAGATGGAATTGCCCGAGTTTATGGATTGAAGGAGATTCAAGCTGTGGAAATGGTGGAATTTTCCAATGGTGTCAAAGGAATAGCCTTAAATCTTGAGAATGATAATGTAGGGATTGTTGTCTTTGGTAGTGATACCGTTATTAAGGAAGGTGATCTTGAAAGGCTATGTTCGGGCGTGTGGTCGACACCTTGGGAGCACCCATTGATGGAAGAGAGTGAAAGCCCCTGGGATTATTGA

Coding sequence (CDS)

ATGGGTCGAGTCCTATCTGTAGGAGATGGAATTGCCCGAGTTTATGGATTGAAGGAGATTCAAGCTGTGGAAATGGTGGAATTTTCCAATGGTGTCAAAGGAATAGCCTTAAATCTTGAGAATGATAATGTAGGGATTGTTGTCTTTGGTAGTGATACCGTTATTAAGGAAGGTGATCTTGAAAGGCTATGTTCGGGCGTGTGGTCGACACCTTGGGAGCACCCATTGATGGAAGAGAGTGAAAGCCCCTGGGATTATTGA

Protein sequence

MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDLERLCSGVWSTPWEHPLMEESESPWDY
Homology
BLAST of IVF0009989 vs. ExPASy Swiss-Prot
Match: P05492 (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.9e-23
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           +GRV+SVGDGIARVYGL EIQA EMVEF++GVKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 30  IGRVISVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. ExPASy Swiss-Prot
Match: Q06735 (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-22
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           +GRV+SVGDGIARVYGL EIQA EMVEF++GVKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 30  IGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. ExPASy Swiss-Prot
Match: P18260 (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-22
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           +GRV+SVGDGIARVYGL EIQA EMVEF++GVKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 30  IGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. ExPASy Swiss-Prot
Match: P05494 (ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-22
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           +GRV+SVGDGIARVYGL EIQA EMVEF++GVKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 30  IGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. ExPASy Swiss-Prot
Match: P05495 (ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 GN=ATPA PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-22
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           +GRV+SVGDGIARVYGL EIQA EMVEF++GVKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 30  IGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. ExPASy TrEMBL
Match: A0A0A0KT56 (ATP-synt_ab_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G321490 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-30
Identity = 74/109 (67.89%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           MGRV SVGDGI+RVYGLKEIQA EMVEFS+GVKGIALNLEN+NVGI++FGSDT IKEGDL
Sbjct: 1   MGRVFSVGDGISRVYGLKEIQAGEMVEFSSGVKGIALNLENENVGIIIFGSDTAIKEGDL 60

Query: 61  ------------ERLCSGVWSTPWEHPLMEE-----------SESPWDY 87
                       ERLC GVWSTPW++ LMEE           SESPWDY
Sbjct: 61  VKRTRSIVDVLRERLCLGVWSTPWKYLLMEEGSKRSSAKTCRSESPWDY 109

BLAST of IVF0009989 vs. ExPASy TrEMBL
Match: A0A5A7VI90 (Putative ATP synthase F1 subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002420 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.5e-24
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL
Sbjct: 30  MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 89

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 90  VKCTGSIVDVP 100

BLAST of IVF0009989 vs. ExPASy TrEMBL
Match: K9N0G2 (ATPase subunit 1 (Fragment) OS=Eleusine coracana OX=4511 GN=ATP1 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.9e-22
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           MGRVLSVGDGIARVYGLKEIQA EMVEFS+GVKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 30  MGRVLSVGDGIARVYGLKEIQAGEMVEFSSGVKGIALNLENENVGIVVFGSDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. ExPASy TrEMBL
Match: A0A5D3BKJ9 (Putative ATP synthase F1 subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00380 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.9e-22
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           MGRVLSVGDGIARVYGLKEIQA EMVEFS+GVKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 30  MGRVLSVGDGIARVYGLKEIQAGEMVEFSSGVKGIALNLENENVGIVVFGSDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. ExPASy TrEMBL
Match: G3EU05 (ATP synthase subunit alpha OS=Cucumis melo subsp. melo OX=412675 GN=atp1 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.9e-22
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           MGRVLSVGDGIARVYGLKEIQA EMVEFS+GVKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 30  MGRVLSVGDGIARVYGLKEIQAGEMVEFSSGVKGIALNLENENVGIVVFGSDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. NCBI nr
Match: KAE8648350.1 (hypothetical protein Csa_023147 [Cucumis sativus])

HSP 1 Score: 142 bits (358), Expect = 4.05e-41
Identity = 74/109 (67.89%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           MGRV SVGDGI+RVYGLKEIQA E+VEFSNGVKGIALNLEN+NVGI++FGSDT IKEGDL
Sbjct: 54  MGRVFSVGDGISRVYGLKEIQAREIVEFSNGVKGIALNLENENVGIIIFGSDTAIKEGDL 113

Query: 61  ------------ERLCSGVWSTPWEHPLMEE-----------SESPWDY 86
                       ERLC GVWSTPW++ LMEE           SESPWDY
Sbjct: 114 VKRTRSIVDVLRERLCLGVWSTPWKYLLMEEGSKRSSAKTCRSESPWDY 162

BLAST of IVF0009989 vs. NCBI nr
Match: KAA0066857.1 (putative ATP synthase F1 subunit 1 [Cucumis melo var. makuwa] >TYK28005.1 putative ATP synthase F1 subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 9.87e-32
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL
Sbjct: 30  MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 89

Query: 61  ERLCSGVWSTP 71
            +    +   P
Sbjct: 90  VKCTGSIVDVP 100

BLAST of IVF0009989 vs. NCBI nr
Match: AFY08517.1 (ATPase subunit 1, partial [Eleusine coracana])

HSP 1 Score: 113 bits (282), Expect = 4.95e-29
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           MGRVLSVGDGIARVYGLKEIQA EMVEFS+GVKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 30  MGRVLSVGDGIARVYGLKEIQAGEMVEFSSGVKGIALNLENENVGIVVFGSDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 71
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. NCBI nr
Match: KAA0061103.1 (ATPase subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 1.11e-28
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 0

Query: 1  MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
          MGRVLSVGDGIARVYGLKEIQA EMV+F++ VKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 12 MGRVLSVGDGIARVYGLKEIQAGEMVKFASSVKGIALNLENENVGIVVFGSDTTIKEGDL 71

Query: 61 ERLCSGVWSTPWEHPLME 78
           +    +   P    ++E
Sbjct: 72 VKRIGLIMDVPVGKAMLE 89

BLAST of IVF0009989 vs. NCBI nr
Match: TYJ99657.1 (putative ATP synthase F1 subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 1.57e-28
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           MGRVLSVGDGIARVYGLKEIQA EMVEFS+GVKGIALNLEN+NVGIVVFGSDT IKEGDL
Sbjct: 30  MGRVLSVGDGIARVYGLKEIQAGEMVEFSSGVKGIALNLENENVGIVVFGSDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 71
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-22
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           +GRV+SVGDGIA+VYGL EIQA EMV F+NGVKG+ALNLEN+NVGIVVFG DT IKEGDL
Sbjct: 300 IGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDL 359

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 360 VKRTGSIVDVP 370

BLAST of IVF0009989 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-22
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 1   MGRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEGDL 60
           +GRV+SVGDGIA+VYGL EIQA EMV F+NGVKG+ALNLEN+NVGIVVFG DT IKEGDL
Sbjct: 30  IGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDL 89

Query: 61  ERLCSGVWSTP 72
            +    +   P
Sbjct: 90  VKRTGSIVDVP 100

BLAST of IVF0009989 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-14
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 2  GRVLSVGDGIARVYGLKEIQAVEMVEFSNGVKGIALNLENDNVGIVVFGSDTVIKEG 59
          G VL VGDGIAR+YGL E+ A E+VEF  G  GIALNLE++NVG+V+ G   +I+EG
Sbjct: 30 GTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEG 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P054927.9e-2374.65ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA P... [more]
Q067351.0e-2274.65ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=... [more]
P182601.0e-2274.65ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA P... [more]
P054941.0e-2274.65ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1[more]
P054951.0e-2274.65ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 G... [more]
Match NameE-valueIdentityDescription
A0A0A0KT561.8e-3067.89ATP-synt_ab_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3214... [more]
A0A5A7VI902.5e-2485.92Putative ATP synthase F1 subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa O... [more]
K9N0G26.9e-2280.28ATPase subunit 1 (Fragment) OS=Eleusine coracana OX=4511 GN=ATP1 PE=3 SV=1[more]
A0A5D3BKJ96.9e-2280.28Putative ATP synthase F1 subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa O... [more]
G3EU056.9e-2280.28ATP synthase subunit alpha OS=Cucumis melo subsp. melo OX=412675 GN=atp1 PE=3 SV... [more]
Match NameE-valueIdentityDescription
KAE8648350.14.05e-4167.89hypothetical protein Csa_023147 [Cucumis sativus][more]
KAA0066857.19.87e-3285.92putative ATP synthase F1 subunit 1 [Cucumis melo var. makuwa] >TYK28005.1 putati... [more]
AFY08517.14.95e-2980.28ATPase subunit 1, partial [Eleusine coracana][more]
KAA0061103.11.11e-2870.51ATPase subunit 1 [Cucumis melo var. makuwa][more]
TYJ99657.11.57e-2880.28putative ATP synthase F1 subunit 1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT2G07698.13.1e-2270.42ATPase, F1 complex, alpha subunit protein [more]
ATMG01190.13.1e-2270.42ATP synthase subunit 1 [more]
ATCG00120.15.2e-1461.40ATP synthase subunit alpha [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainPFAMPF02874ATP-synt_ab_Ncoord: 1..59
e-value: 2.4E-17
score: 63.2
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyGENE3D2.40.30.20coord: 1..64
e-value: 4.1E-28
score: 99.0
NoneNo IPR availablePANTHERPTHR48082ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIALcoord: 1..63
NoneNo IPR availablePANTHERPTHR48082:SF2ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIALcoord: 1..63
NoneNo IPR availableCDDcd18116ATP-synt_F1_alpha_Ncoord: 2..59
e-value: 6.55299E-29
score: 96.3684
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilySUPERFAMILY50615N-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009989.1IVF0009989.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0046034 ATP metabolic process
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0031090 organelle membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0043531 ADP binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism