IVF0009980 (gene) Melon (IVF77) v1

Overview
NameIVF0009980
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 35 kDa protein
Locationtig00000656: 585937 .. 590590 (+)
RNA-Seq ExpressionIVF0009980
SyntenyIVF0009980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACTTTCATTTCTGGGGGGAGACGAGAAGTAGGCTTTGTGCGGCATGAGTGGGAGCAACGTAAACAAGGTCTTTTACGCCGATAACTACCATCCCATTCAGGCCGGCAGCATCGACGGCACCGACATTCTTCCCCACGACAACGCCGTCTACCGAGCTTTGCTCTGTTCTTCTGCTGGCCTCTGTAATTCTCTCCCCTCTAATTTTTCAACTCCCACTTTGTATTTGATGACAACGTCTTTTATTCTAATCTACTGGTGTGGTCTGTTTCTGGTAGATGACCCCCATGGCGATCCCAAGGTCTTTGGTGACCCTTACTGCACCCTCTTCGTTGGTCGCCTTTCACATCTCACTACCGAAGACACTCTTCGCAGGGTATTTTCTATTCATTTATCAGTTTTTCTTGTGGTTTATTGATTTCTGATAAGAATTGAGATGAATTAATACTCCTTCGGAACTTGGGTGTTGGTTTGTTTGGCTGGATGTGAGAATTTAGTGGTTGGTGATAATGGCTATTATGTGTTGATTGCTATTACTGCTATACTGTTTTACTTTGTCTCAGATGGTCTGTATATTAGGCCCTAGGAAGATGGACACTGAGAGAGAGTGGATTGTCAGTTATATAGGTCAACTGGCACCACGATTTGTTGGAGGTGCAGCTAAAACTATAATTAAAACTAGACGAGAGAGTTGTAGTTTTTTGTTTTTTGGATGCAATCAAAGTTAAAGGAACTCTTCGACGGGATTTTCATAGGGTCGTGATTGCTGCAATGTAGAACGATTGCTAATAATATTTTACCCGAAGAGAAGGGTTGTTGACTTATGCCTGTAATCATTGAGACCTTCGGCGGGCCAGGAACAGAATGGCTTGGAGAAGTGGGTCTTCTGGCTAGATCCAAGGGGACATCTCCTCGTTTCTAATCAGCTCTTGCATGCATTCTTGTGTGCTAGACTTATGCCCGTGAACCGTGTCTCGAATGTCACAAAGGATAGGACTCAACCACAGGTAGTCTTGGAATGTCTTTAATTACCAAACTCAGCGGTAAAGTCGGGGTGGAGATAGGTCATGAAGAGGAAATGGCACTTCCAAAATCTGCTTTGAATAGGTTTTTTTAGTTTTCTAGTTTAGGTTTTTAGGTTAGTTCTTTAATTAGCTTCATTAAGGTTAGCTTAGGTTTTCTTTGGGATCTACTATCTAGTACAAATTGTTGGTGTAAACCAAGTGGGGCATTTATTAAATGATTAAAACATCTTTCACATCCTAAATCTAAAGCTAGCTACTTAAATTAAGAGCACAACTGAAAGCCAGAACTGACTTATCAAATAAACAGAAAATTGTTTGTAGCTTCATAAACTAAGCTCTAACAGCTATTTCCTAAAACTGTAAATAATAGACTACATCAAGACGACTGAGGAGAAAATCAGCCCGTCTACACCTTGCTTTCTCAAGCTCTGGATTCTCAAAACCTTGCTTGTCTTTTTTAATTACTTGCAATGTTGCATTTGATATTTCATTTAAAGTTTACATCTTTTCTTTCTATTTCCATTTCTACATTGCCATCAGCTGAAAAAGGAATTTCATCTCTCAGGCAATGAGCAAGTATGGACAGGTTAAAGATCTACGCTTAGTCAGACACATTGGTGATTTCCTTATCTAGTTCTCATTTTTTCTCTTATTTGGCTTAAGGTGTTTTCTGTTTAGTGATTAGGTGCCCAAAATTCTAGTCATATATCCAATATTTATGATATTCATACCATAAACATGTTTTACATTTATCAGATTACTCTGTTCATAGAAGTTCAACGAATGGAAGAAACCACAATGTTTCTAACCAAAAACTGCATGCTGTTTTGCAGTAACAGGTTCTTCACGTGGTTATGCTTTTGTTGAATATGAAACTGAAAAAGAGATGCGTCGTGCATATAAGGTGGTATAACTTTTTGAATCTTTTAGGTTTCATCTGAGCTTATACTTTTGTCTTGTTTTTGGTTTACATATTCATTTATTTACTTTGCTGTAAGTAATATTAAATAAATTTGTGTGGGATGGGATGTTATATTGCATTCTCTTCCAAGGTTACTAGGTTTTCTTATTCACTATTGGTTCTTTGGAAGCTCTTAGTTGAGTGATTCTTGTTGCTTGTCCTACCTTTACTACATTCATGAAATTCTTCGTTCTTATAATTCTTTAGTAATTATAGCTTTCTTATGATTTTTAACAATTAGAGGGCTCTTCTTGTTTAGTTTTGTGGGAGGGGGTTTCCTCTACCCCTGCCATTAGTGTTCTTTTGGCTTTCTTGATGAATTCATTCCTTTGTTTCTCATAAAAAAATATATAACTAATTAGTTAAAAAGAGCATCCAATCATTTCACTTTGTTTTGATGGTGAATGATATTGATTGATATTAAGTCCCTTTATTCATCAGGATGCTCATCATTCTATGATAGATGATTGTGAAATTATAGTTGATTACAATCGACAACGGCTAATGTCTGGATGGATTCCTCGGAGATTAGGTAAGTGGAGGTCATATAGTTTCGCATAATAGTACCCCTTACTCAAGTCTGTTTGATTTTTTCTGTGCTATTTGTAATAGGAGGGGGTCTTGGAGGTAAGAAGGAATCTGGACAACTTCGATTTGGAGGAAGAGAAAGACCATTCCGCGCTCCGCTGTATGCTCTACTTTCCTCATTATGTAATGCTGGTTGGATATTAAACTCACACTTTACTTTCAGATGAATTTTGTTAGAAATAGTGGGCTTGGGTAGTTGAGATTTACTTTGCCCTAATTTTTAATTATTTTAATGAGTCTCATGTTGCCTATAAATATTTTTTTTTGTACCTTTATTATTATCAGAAAATAATAAGAAACATCTATACCAGGGTTTTTCTCTTTGTAGTAGGGTTTCCATGTAGACCTTGTGTTCTTTCTTCGTCTCTATTTTTCGATAGATTTTAGTTCTGCTTCTTGGGTTCTCATGTTATGCCAAAGAGTGTTTTGTTGGCATATAACTCTGGCTTGGAGCTATTTGATTACCGCTACCCACGGTTGCATCTAAAGTAGCTAGGTTAGAAAGTAAATGTAATCCCTGTTCACTTGACATTGAACTACCATTCCTCGCTATAATTTCCCAACCCAATTAATCTGCTAATTCCTGTAATTCTCCAAGCTTATAGCAAGTACTTCAATGATTAAGGTGGCTTCTTTCATTGTTTATGCTTTTGTTTGCTAATTCAGTTTTCCGTTTGCATGCATTTATGTCATTCATTGAATCAACACCTCTAATCTATACCCTTTGAGCAGACGTCCGATCCCTTATGACGATTTGAAAAGGCTTGGGATTACTCCTCCTCCTGAAGGAAGATACATGTCTCGGTTTCAGGTATTCTTTCACAAATATTATTGATCCAACTCTTAAAACAAGGAACATATAAGCCTCATAATCTGTCTCAATTTAATTGCAGGAACGTCTTTGATGTTCATGCATACTGTAGAACCTTTACATGTTTCCACAGTACCATTCTTCTGCTCTTCCACTTGACATTTTGTAATGCAATTTGTAGTGGGAACGTCTATGATGTTCATACATCTTGTAGAACCTTAACGTATTCTCCCAGTTCGCTCCTCTTCTCTTCCACTTGATATTTTGTAATGCAATGGGCGATCACTTGACTTGAACTGAGGTTTGTACACTATTACACTAGAAGTAATATGTTTTTTTTGTTGGTTTCTTGTTGGTTTTAGATTCCTTCTCCTCCCAGAAGAGGAACAGATTCTGAACGTAGAGAAGAAGGCTCCAATAAGAATGAACCTACGGAGAAGGATGGACACAATCATAGAAATAGTTCGATAGATGAAGATGATTGGTCTCATACGAGGGGCTCAAATGACTACAGAGGGGGGCACTCACACAAGGGAAACAATGAGAAGATGAAACATGAATCTAGGAGGACCTCAAAAGACAGGGATGATTATTCCCCCCACAAGAGATTTTCTGAGAAGGAAGACTATTATCAAAGGAGATCTGCTGAGAAGGAAGATCTTTATCGGAGGAGCTCTTCAGATAAGGACCGATCTCGCAGAAGAGATTCTGAAGATCGGGATGACCACTCGAGGAAGCATCACAAATCTCATAGATAGAGACTCCATTATCCATCTCAATATGAATGAAGCCGATCTTGTTCACGTGTTGAGCTTCATTTATGACGAACAAAAGTTAAACCCATGTTAAATTAAATGAAGTTAAGTGACGTTAACGTTGAAGTTATGGAAGGCCGTTAGTTGCATTAAGTGAACTCAAGTCAAGGTGAAGTGTATCTCAAGCTTCAAGTTGTAGAAGTCGAGCATCCATTCATGAAACTGCCGTTCAAATTGAGATTCATTTATACATGGGAGGTTGCAAAGACTTTCAACAAAAGGCTTCAATCTCAGATCTATGGTTCATCATTTACTGTAATGTCATATAAGACCTTCATGTTTTTCAGATTTTTTGTTTTTCTGGGTTAGGAAGTTACAACCCTTTAAGTTGGTATTTGGTTACTTAGCTAATTCCTATGTAAAATCACTCGAAGGATATAGTAGGGTAAAAAGAGCTCTGAACTTCTTTCTAGGCTAGAGGTTTTTTCTTTAAAAAAAATGACTTTAACGTAGT

mRNA sequence

GAAACTTTCATTTCTGGGGGGAGACGAGAAGTAGGCTTTGTGCGGCATGAGTGGGAGCAACGTAAACAAGGTCTTTTACGCCGATAACTACCATCCCATTCAGGCCGGCAGCATCGACGGCACCGACATTCTTCCCCACGACAACGCCGTCTACCGAGCTTTGCTCTGTTCTTCTGCTGGCCTCTATGACCCCCATGGCGATCCCAAGGTCTTTGGTGACCCTTACTGCACCCTCTTCGTTGGTCGCCTTTCACATCTCACTACCGAAGACACTCTTCGCAGGGCAATGAGCAAGTATGGACAGGTTAAAGATCTACGCTTAGTCAGACACATTGTAACAGGTTCTTCACGTGGTTATGCTTTTGTTGAATATGAAACTGAAAAAGAGATGCGTCGTGCATATAAGGATGCTCATCATTCTATGATAGATGATTGTGAAATTATAGTTGATTACAATCGACAACGGCTAATGTCTGGATGGATTCCTCGGAGATTAGGAGGGGGTCTTGGAGGTAAGAAGGAATCTGGACAACTTCGATTTGGAGGAAGAGAAAGACCATTCCGCGCTCCGCTACGTCCGATCCCTTATGACGATTTGAAAAGGCTTGGGATTACTCCTCCTCCTGAAGGAAGATACATGTCTCGGTTTCAGATTCCTTCTCCTCCCAGAAGAGGAACAGATTCTGAACGTAGAGAAGAAGGCTCCAATAAGAATGAACCTACGGAGAAGGATGGACACAATCATAGAAATAGTTCGATAGATGAAGATGATTGGTCTCATACGAGGGGCTCAAATGACTACAGAGGGGGGCACTCACACAAGGGAAACAATGAGAAGATGAAACATGAATCTAGGAGGACCTCAAAAGACAGGGATGATTATTCCCCCCACAAGAGATTTTCTGAGAAGGAAGACTATTATCAAAGGAGATCTGCTGAGAAGGAAGATCTTTATCGGAGGAGCTCTTCAGATAAGGACCGATCTCGCAGAAGAGATTCTGAAGATCGGGATGACCACTCGAGGAAGCATCACAAATCTCATAGATAGAGACTCCATTATCCATCTCAATATGAATGAAGCCGATCTTGTTCACGTGTTGAGCTTCATTTATGACGAACAAAAGTTAAACCCATGTTAAATTAAATGAAGTTAAGTGACGTTAACGTTGAAGTTATGGAAGGCCGTTAGTTGCATTAAGTGAACTCAAGTCAAGGTGAAGTGTATCTCAAGCTTCAAGTTGTAGAAGTCGAGCATCCATTCATGAAACTGCCGTTCAAATTGAGATTCATTTATACATGGGAGGTTGCAAAGACTTTCAACAAAAGGCTTCAATCTCAGATCTATGGTTCATCATTTACTGTAATGTCATATAAGACCTTCATGTTTTTCAGATTTTTTGTTTTTCTGGGTTAGGAAGTTACAACCCTTTAAGTTGGTATTTGGTTACTTAGCTAATTCCTATGTAAAATCACTCGAAGGATATAGTAGGGTAAAAAGAGCTCTGAACTTCTTTCTAGGCTAGAGGTTTTTTCTTTAAAAAAAATGACTTTAACGTAGT

Coding sequence (CDS)

ATGAGTGGGAGCAACGTAAACAAGGTCTTTTACGCCGATAACTACCATCCCATTCAGGCCGGCAGCATCGACGGCACCGACATTCTTCCCCACGACAACGCCGTCTACCGAGCTTTGCTCTGTTCTTCTGCTGGCCTCTATGACCCCCATGGCGATCCCAAGGTCTTTGGTGACCCTTACTGCACCCTCTTCGTTGGTCGCCTTTCACATCTCACTACCGAAGACACTCTTCGCAGGGCAATGAGCAAGTATGGACAGGTTAAAGATCTACGCTTAGTCAGACACATTGTAACAGGTTCTTCACGTGGTTATGCTTTTGTTGAATATGAAACTGAAAAAGAGATGCGTCGTGCATATAAGGATGCTCATCATTCTATGATAGATGATTGTGAAATTATAGTTGATTACAATCGACAACGGCTAATGTCTGGATGGATTCCTCGGAGATTAGGAGGGGGTCTTGGAGGTAAGAAGGAATCTGGACAACTTCGATTTGGAGGAAGAGAAAGACCATTCCGCGCTCCGCTACGTCCGATCCCTTATGACGATTTGAAAAGGCTTGGGATTACTCCTCCTCCTGAAGGAAGATACATGTCTCGGTTTCAGATTCCTTCTCCTCCCAGAAGAGGAACAGATTCTGAACGTAGAGAAGAAGGCTCCAATAAGAATGAACCTACGGAGAAGGATGGACACAATCATAGAAATAGTTCGATAGATGAAGATGATTGGTCTCATACGAGGGGCTCAAATGACTACAGAGGGGGGCACTCACACAAGGGAAACAATGAGAAGATGAAACATGAATCTAGGAGGACCTCAAAAGACAGGGATGATTATTCCCCCCACAAGAGATTTTCTGAGAAGGAAGACTATTATCAAAGGAGATCTGCTGAGAAGGAAGATCTTTATCGGAGGAGCTCTTCAGATAAGGACCGATCTCGCAGAAGAGATTCTGAAGATCGGGATGACCACTCGAGGAAGCATCACAAATCTCATAGATAG

Protein sequence

MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPYCTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPYDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDEDDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKEDLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR
Homology
[Close]
BLAST of IVF0009980 vs. ExPASy Swiss-Prot
Match: Q8VY74 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP35 PE=1 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 4.5e-98
Identity = 209/344 (60.76%), Postives = 243/344 (70.64%), Query Frame = 0 

Query: 3   GSN-VNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPYC 62
           G+N VNKVFYA +YHPIQAGSIDGTD+ PHDN V RALLC +AGLYDP GD K  GDPYC
Sbjct: 5   GNNVVNKVFYATSYHPIQAGSIDGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGDPYC 64

Query: 63  TLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYKD 122
           TLFVGRLSH TTEDTLR  MSKYG++K+LRLVRHIVTG+SRGY FVEYETEKEM RAY+D
Sbjct: 65  TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124

Query: 123 AHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPY 182
           AHHS+ID  EIIVDYNRQ+LM GWIPRRLGGGLGG+KESGQLRFGGR+RPFRAPLRPIP+
Sbjct: 125 AHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRPFRAPLRPIPH 184

Query: 183 DDLKRLGITPPPEGRYMSRFQIPSPPRR-GTDSERREEGSNKNEPTEKDGHNHRNSSIDE 242
           +DLK+LGI  PPEGRYMSR QIPSPPRR G+ S+R EE   +    E++      SS+  
Sbjct: 185 EDLKKLGIQLPPEGRYMSRTQIPSPPRRKGSVSDREEEYYREKSSVEREEEFKERSSL-- 244

Query: 243 DDWSHTRGSNDYRGGHSHKGNNEKMKHES-RRTSKDRDDYSPHKRFSEK-------EDYY 302
                       R  HSH+ +     H S RR SKDR++ S  +  S++       ED Y
Sbjct: 245 ------------RSYHSHRSSAH--THSSHRRRSKDREECSREESRSDRKERARGMEDRY 304

Query: 303 QRRSAEKEDLYRRSSSDKDRSRRR-----DSEDRDDHSRKHHKS 332
                E     R   S++DRSR+R         R  +S+ HH S
Sbjct: 305 GDNKGEVSGSKRSKRSEEDRSRKRHKHLPSHHHRRSYSQDHHSS 332

[Close]
BLAST of IVF0009980 vs. ExPASy Swiss-Prot
Match: Q16560 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP35 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.5e-48
Identity = 118/244 (48.36%), Postives = 149/244 (61.07%), Query Frame = 0 

Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVIGDPLLTLFVARLNLQ 67

Query: 72  TTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYKDAHHSMIDDCE 131
           T ED L+   S+YG ++ LRLVR +VTG S+GYAF+EY+ E+ + +AY+DA   +ID  E
Sbjct: 68  TKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHE 127

Query: 132 IIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPYDDLKRLGIT 191
           I VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  +DL R G  
Sbjct: 128 IFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGKR 187

Query: 192 PPPEGRYMSRFQIPSPPRRGTDSER-REEGSNKNEPTEKDGHNHRNSSIDEDDWSHTRGS 251
              E R  SR +      R  D +R RE+   + EPT             ++DW   R  
Sbjct: 188 ERRE-RSRSRERHWDSRTRDRDHDRGREKRWQEREPTR---------VWPDNDWERERDF 235

Query: 252 NDYR 254
            D R
Sbjct: 248 RDDR 235

[Close]
BLAST of IVF0009980 vs. ExPASy Swiss-Prot
Match: Q9D384 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus OX=10090 GN=Snrnp35 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.6e-47
Identity = 106/208 (50.96%), Postives = 134/208 (64.42%), Query Frame = 0 

Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNLQ 67

Query: 72  TTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYKDAHHSMIDDCE 131
           T E+ L+   S+YG ++ LRLVR +VTG S+GYAF+EY+ E+ + +AY+DA   +ID  E
Sbjct: 68  TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHE 127

Query: 132 IIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPYDDLKRLGIT 191
           I VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  ++  R G  
Sbjct: 128 IFVDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNEPHREGKR 187

Query: 192 PPPE-GRYMSRFQIPSPPRRGTDSERRE 218
              E  R   R   P P  R  D  R +
Sbjct: 188 ERRERSRSRDRHWDPRPRERDHDRGREK 209

[Close]
BLAST of IVF0009980 vs. ExPASy Swiss-Prot
Match: Q5U1W5 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus OX=10116 GN=Snrnp35 PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 8.8e-46
Identity = 115/255 (45.10%), Postives = 146/255 (57.25%), Query Frame = 0 

Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNSQ 67

Query: 72  TTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYKDAHHSMIDDCE 131
           T E+ L+   S+YG ++ LRLVR +VTG S+GYAF+EY+ E+ + +AY+DA   +ID  E
Sbjct: 68  TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHE 127

Query: 132 IIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPYDDLKRLGIT 191
           I VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  ++  R G  
Sbjct: 128 IFVDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNEPHREGKR 187

Query: 192 PPPE-GRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDEDDWSHTRGS 251
              E  R   R   P P  R  D  R +   +            R     E+DW   R  
Sbjct: 188 ERRERSRSRDRHWDPRPRERDHDRGREKHWQD------------RARVWPENDWEREREF 244

Query: 252 NDYRGGHSHKGNNEK 265
            D R     K +  K
Sbjct: 248 RDERAKTRDKRDRSK 244

[Close]
BLAST of IVF0009980 vs. ExPASy Swiss-Prot
Match: Q1LZH0 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus OX=9913 GN=SNRNP35 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.3e-45
Identity = 117/254 (46.06%), Postives = 149/254 (58.66%), Query Frame = 0 

Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YTP--NKGVTGDPLLTLFVARLNLQ 67

Query: 72  TTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYKDAHHSMIDDCE 131
           T E+ L+   S+YG ++ LRLVR +VTG S+GYAF+EY+ E+ + +AY+DA   +ID  E
Sbjct: 68  TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDADGLVIDQHE 127

Query: 132 IIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPYDDLKRLGIT 191
           I VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  +D  R G  
Sbjct: 128 IFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDQFREG-- 187

Query: 192 PPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDEDDWSHTRGSN 251
              E R  SR +      R  DS  R+      E   ++    R  +  E DW   R   
Sbjct: 188 -KRERRERSRSR-----ERHWDSRMRDHHDRGREKRWQEREPAR--AWPEGDWERERDFR 245

Query: 252 DYRGGHSHKGNNEK 265
           D R     K +  K
Sbjct: 248 DDRVKGREKRDRSK 245

[Close]
BLAST of IVF0009980 vs. ExPASy TrEMBL
Match: A0A5A7VKF1 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00140 PE=4 SV=1)

HSP 1 Score: 666.4 bits (1718), Expect = 6.3e-188
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240
           YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240

Query: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300
           DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE
Sbjct: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300

Query: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 334
           DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR
Sbjct: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 333

[Close]
BLAST of IVF0009980 vs. ExPASy TrEMBL
Match: A0A1S3AXF1 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Cucumis melo OX=3656 GN=LOC103483955 PE=4 SV=1)

HSP 1 Score: 657.1 bits (1694), Expect = 3.8e-185
Identity = 329/333 (98.80%), Postives = 330/333 (99.10%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240
           YDDLKRLGITPPPEGRYMSRFQIPSPPRR TDSERREEGSNKNEPTEKDGHNHRNSSIDE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRETDSERREEGSNKNEPTEKDGHNHRNSSIDE 240

Query: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300
           DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTS DRDDYSPHKRFS KEDYYQRRSAEKE
Sbjct: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSNDRDDYSPHKRFSGKEDYYQRRSAEKE 300

Query: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 334
           DLYRRSSSDKDRSRRRDS+DRDDHSRKHHKSHR
Sbjct: 301 DLYRRSSSDKDRSRRRDSKDRDDHSRKHHKSHR 333

[Close]
BLAST of IVF0009980 vs. ExPASy TrEMBL
Match: A0A1S4DT11 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Cucumis melo OX=3656 GN=LOC103483955 PE=4 SV=1)

HSP 1 Score: 648.3 bits (1671), Expect = 1.8e-182
Identity = 327/333 (98.20%), Postives = 328/333 (98.50%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHI  GSSRGYAFVEYETEKEMRRAYK
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHI--GSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240
           YDDLKRLGITPPPEGRYMSRFQIPSPPRR TDSERREEGSNKNEPTEKDGHNHRNSSIDE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRETDSERREEGSNKNEPTEKDGHNHRNSSIDE 240

Query: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300
           DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTS DRDDYSPHKRFS KEDYYQRRSAEKE
Sbjct: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSNDRDDYSPHKRFSGKEDYYQRRSAEKE 300

Query: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 334
           DLYRRSSSDKDRSRRRDS+DRDDHSRKHHKSHR
Sbjct: 301 DLYRRSSSDKDRSRRRDSKDRDDHSRKHHKSHR 331

[Close]
BLAST of IVF0009980 vs. ExPASy TrEMBL
Match: A0A6J1C9C6 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Momordica charantia OX=3673 GN=LOC111009418 PE=4 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 2.5e-152
Identity = 282/334 (84.43%), Postives = 304/334 (91.02%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60
           M+GSNVNKVF+A+NYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDP GDPKV GDPY
Sbjct: 1   MNGSNVNKVFFAENYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVSGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120
           CTLFVGRLSHLT EDTLRRAMSKYG+VK+LRLVRHIVTGSSRGYAFVEYETEKEMRRAYK
Sbjct: 61  CTLFVGRLSHLTDEDTLRRAMSKYGRVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHHSMIDDCEIIVDYNRQ+LM GW+PRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQQLMPGWVPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240
           +DDLKRLGITPPPEGRYMSRFQ+PSPPRR TDS  REEGS++ +  EKDGH  R+SSIDE
Sbjct: 181 FDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVCREEGSSERDSLEKDGHTRRSSSIDE 240

Query: 241 -DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEK 300
            DDWS TRGS+DYR GHSHKGN EK KHESRR S ++D++SP   + E ED YQRRS+EK
Sbjct: 241 DDDWSRTRGSSDYR-GHSHKGNYEKTKHESRRFSNEKDEHSPRMSYYENEDRYQRRSSEK 300

Query: 301 EDLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 334
           ED Y RSS DKDRSRRRDS DRDDH+RK +KSHR
Sbjct: 301 EDRYWRSSLDKDRSRRRDSNDRDDHTRKRYKSHR 333

[Close]
BLAST of IVF0009980 vs. ExPASy TrEMBL
Match: A0A6J1IB25 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111470870 PE=4 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 6.1e-151
Identity = 282/333 (84.68%), Postives = 296/333 (88.89%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60
           MSGSNV+KVFYA+NYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDP  DPKVFGDPY
Sbjct: 1   MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLRDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120
           CTLFVGRLSHLTTED+LRRAMSKYG+VK+LRLVRHIVTGSSRGYAFVEYETEKEMR AYK
Sbjct: 61  CTLFVGRLSHLTTEDSLRRAMSKYGRVKNLRLVRHIVTGSSRGYAFVEYETEKEMRHAYK 120

Query: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHHSMIDDCEIIVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240
           +DDLKRLGITPPPEGRYMSRFQ+PSPPRR TDS  REEGS+  +  EKDGH+ R+SS D 
Sbjct: 181 HDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVCREEGSSVKDSVEKDGHS-RSSSTDG 240

Query: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300
           DDWSHTR  NDYRGGHSHKGN EKMKHESRR S D            KEDYYQR S+EKE
Sbjct: 241 DDWSHTRSPNDYRGGHSHKGNYEKMKHESRRGSND------------KEDYYQRSSSEKE 300

Query: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 334
           D Y+R SSDKDRSRRRDS DRDDHSRK HKS R
Sbjct: 301 DRYQRRSSDKDRSRRRDSNDRDDHSRKRHKSRR 320

[Close]
BLAST of IVF0009980 vs. NCBI nr
Match: KAA0067647.1 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cucumis melo var. makuwa] >TYK23649.1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 664 bits (1712), Expect = 1.98e-240
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240
           YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240

Query: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300
           DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE
Sbjct: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300

Query: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 333
           DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR
Sbjct: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 333

[Close]
BLAST of IVF0009980 vs. NCBI nr
Match: XP_008439055.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cucumis melo])

HSP 1 Score: 654 bits (1688), Expect = 9.04e-237
Identity = 329/333 (98.80%), Postives = 330/333 (99.10%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240
           YDDLKRLGITPPPEGRYMSRFQIPSPPRR TDSERREEGSNKNEPTEKDGHNHRNSSIDE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRETDSERREEGSNKNEPTEKDGHNHRNSSIDE 240

Query: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300
           DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTS DRDDYSPHKRFS KEDYYQRRSAEKE
Sbjct: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSNDRDDYSPHKRFSGKEDYYQRRSAEKE 300

Query: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 333
           DLYRRSSSDKDRSRRRDS+DRDDHSRKHHKSHR
Sbjct: 301 DLYRRSSSDKDRSRRRDSKDRDDHSRKHHKSHR 333

[Close]
BLAST of IVF0009980 vs. NCBI nr
Match: XP_016899124.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X2 [Cucumis melo])

HSP 1 Score: 646 bits (1666), Expect = 1.89e-233
Identity = 327/333 (98.20%), Postives = 328/333 (98.50%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHI  GSSRGYAFVEYETEKEMRRAYK
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHI--GSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240
           YDDLKRLGITPPPEGRYMSRFQIPSPPRR TDSERREEGSNKNEPTEKDGHNHRNSSIDE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRETDSERREEGSNKNEPTEKDGHNHRNSSIDE 240

Query: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300
           DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTS DRDDYSPHKRFS KEDYYQRRSAEKE
Sbjct: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSNDRDDYSPHKRFSGKEDYYQRRSAEKE 300

Query: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 333
           DLYRRSSSDKDRSRRRDS+DRDDHSRKHHKSHR
Sbjct: 301 DLYRRSSSDKDRSRRRDSKDRDDHSRKHHKSHR 331

[Close]
BLAST of IVF0009980 vs. NCBI nr
Match: XP_004147652.2 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cucumis sativus])

HSP 1 Score: 639 bits (1647), Expect = 3.03e-230
Identity = 322/333 (96.70%), Postives = 327/333 (98.20%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDIL HDNAVYRALLCSSAGLYDPHGDPKVFGDPY
Sbjct: 18  MSGSNVNKVFYADNYHPIQAGSIDGTDILSHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 77

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVK+LRLVRHIVTGSSRGYAFVEYETEKEM+RAYK
Sbjct: 78  CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMQRAYK 137

Query: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 138 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 197

Query: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240
           YDDLKRLGITPPPEGRY SRFQIPSPPRR TDSERREEGSNKNEPTEKDGH+HRNSSIDE
Sbjct: 198 YDDLKRLGITPPPEGRYKSRFQIPSPPRRETDSERREEGSNKNEPTEKDGHSHRNSSIDE 257

Query: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300
           DDWSHTRGSNDYR GHSHKGN+EKMKHESRRTS DRDDYSPHKRFSEKEDYYQ RSAEKE
Sbjct: 258 DDWSHTRGSNDYRVGHSHKGNHEKMKHESRRTSNDRDDYSPHKRFSEKEDYYQSRSAEKE 317

Query: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 333
           DLYRRSSSDKDRSRRRDS+DRDDHSRKHHKSHR
Sbjct: 318 DLYRRSSSDKDRSRRRDSKDRDDHSRKHHKSHR 350

[Close]
BLAST of IVF0009980 vs. NCBI nr
Match: XP_038876781.1 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Benincasa hispida])

HSP 1 Score: 607 bits (1564), Expect = 7.17e-218
Identity = 307/333 (92.19%), Postives = 317/333 (95.20%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60
           MSGSNVNKVFYA+NYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDP GD KVFGDPY
Sbjct: 1   MSGSNVNKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDLKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120
           CTLFVGRLSHLTTEDTLRRAM KYG+VK+LRLVRHIVTGSSRGYAFVEYETEKEMRRAYK
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMGKYGEVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHHSMIDDCE++VDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEVVVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGSNKNEPTEKDGHNHRNSSIDE 240
           YDDLKRLGITPPPEGRYMSRFQ+PSPPRR TDS RREEGSNKN+ TEKDG+N R+SSIDE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSLRREEGSNKNDLTEKDGYNQRDSSIDE 240

Query: 241 DDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRDDYSPHKRFSEKEDYYQRRSAEKE 300
           DDWSH R SNDYRGGHSHKGN EKMKHESRR S D+DDYSPH RFSEKEDYYQRRSAEKE
Sbjct: 241 DDWSHMRDSNDYRGGHSHKGNYEKMKHESRRASNDKDDYSPHMRFSEKEDYYQRRSAEKE 300

Query: 301 DLYRRSSSDKDRSRRRDSEDRDDHSRKHHKSHR 333
           DLYRRSSSDK RSRRRDS DRDDHSRK HKSHR
Sbjct: 301 DLYRRSSSDKHRSRRRDSNDRDDHSRKRHKSHR 333

[Close]
BLAST of IVF0009980 vs. TAIR 10
Match: AT2G43370.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 359.4 bits (921), Expect = 3.2e-99
Identity = 209/344 (60.76%), Postives = 243/344 (70.64%), Query Frame = 0 

Query: 3   GSN-VNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPYC 62
           G+N VNKVFYA +YHPIQAGSIDGTD+ PHDN V RALLC +AGLYDP GD K  GDPYC
Sbjct: 5   GNNVVNKVFYATSYHPIQAGSIDGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGDPYC 64

Query: 63  TLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYKD 122
           TLFVGRLSH TTEDTLR  MSKYG++K+LRLVRHIVTG+SRGY FVEYETEKEM RAY+D
Sbjct: 65  TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124

Query: 123 AHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPY 182
           AHHS+ID  EIIVDYNRQ+LM GWIPRRLGGGLGG+KESGQLRFGGR+RPFRAPLRPIP+
Sbjct: 125 AHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRPFRAPLRPIPH 184

Query: 183 DDLKRLGITPPPEGRYMSRFQIPSPPRR-GTDSERREEGSNKNEPTEKDGHNHRNSSIDE 242
           +DLK+LGI  PPEGRYMSR QIPSPPRR G+ S+R EE   +    E++      SS+  
Sbjct: 185 EDLKKLGIQLPPEGRYMSRTQIPSPPRRKGSVSDREEEYYREKSSVEREEEFKERSSL-- 244

Query: 243 DDWSHTRGSNDYRGGHSHKGNNEKMKHES-RRTSKDRDDYSPHKRFSEK-------EDYY 302
                       R  HSH+ +     H S RR SKDR++ S  +  S++       ED Y
Sbjct: 245 ------------RSYHSHRSSAH--THSSHRRRSKDREECSREESRSDRKERARGMEDRY 304

Query: 303 QRRSAEKEDLYRRSSSDKDRSRRR-----DSEDRDDHSRKHHKS 332
                E     R   S++DRSR+R         R  +S+ HH S
Sbjct: 305 GDNKGEVSGSKRSKRSEEDRSRKRHKHLPSHHHRRSYSQDHHSS 332

[Close]
BLAST of IVF0009980 vs. TAIR 10
Match: AT3G50670.1 (U1 small nuclear ribonucleoprotein-70K )

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-20
Identity = 92/302 (30.46%), Postives = 139/302 (46.03%), Query Frame = 0 

Query: 47  YDPHGDPKVFGDPYCTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAF 106
           YDP+ DP   GDPY TLFV RL++ ++E  ++R    YG +K + LV   +T   +GYAF
Sbjct: 124 YDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAF 183

Query: 107 VEYETEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGL------GGKKES 166
           +EY   ++M+ AYK A    ID   ++VD  R R +  W PRRLGGGL      GG++  
Sbjct: 184 IEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGEEIV 243

Query: 167 GQLRFGGRERPFRAPLRPIPYDDLKRLGITPPPEGRYMSRFQIPSPPRRGTDSERREEGS 226
           G+ +  GR      P RP    +  R         R +S  Q    PR  +    RE+  
Sbjct: 244 GEQQPQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQ----PRERSRDRPREDKH 303

Query: 227 NKNEPTEKDGHNHRNSSIDEDDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSKDRD--- 286
           +++   ++ G +    S  + D +  RG  D R     +    +     R   K+RD   
Sbjct: 304 HRDR--DQGGRDRDRDSRRDRDRTRDRGDRDRRDRDRGRDRTSRDHDRDRSRKKERDYEG 363

Query: 287 ---DYSPHKRFSEKEDYYQRRSAEKEDLYRRSSSDKDR-SRRRDSEDRDD--HSRKHHKS 334
              ++    R  E++  Y+    E    Y     D DR S R D  + DD  + R++ +S
Sbjct: 364 GEYEHEGGGRSRERDAEYRGEPEETRGYYEDDQGDTDRYSHRYDKMEEDDFRYEREYKRS 419

[Close]
BLAST of IVF0009980 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-09
Identity = 35/98 (35.71%), Postives = 50/98 (51.02%), Query Frame = 0 

Query: 53  PKVFGDPYCTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETE 112
           P     P   L+V  LS  TTEDTLR    ++G +  + +V   V    +G+AF+ YETE
Sbjct: 69  PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETE 128

Query: 113 KEMRRAYKDAHHSMIDDCEIIVDYNRQRL-MSGWIPRR 150
           +E  +A +  H   +D   I V+  + R  MS   PRR
Sbjct: 129 EEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRR 166

[Close]
BLAST of IVF0009980 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-09
Identity = 39/114 (34.21%), Postives = 57/114 (50.00%), Query Frame = 0 

Query: 57  GDPYCTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMR 116
           GD     FVG L+  T +  L  A ++YG V D +++    TG SRG+ FV ++ EK M+
Sbjct: 4   GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63

Query: 117 RAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLG---GGLGGKKESGQLRFGG 168
            A +  +   +D   I V+  + R   G    R G   GG GG++E G    GG
Sbjct: 64  DAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGSYGGGGGRREGGGGYSGG 117

[Close]
BLAST of IVF0009980 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-09
Identity = 35/114 (30.70%), Postives = 55/114 (48.25%), Query Frame = 0 

Query: 37  RALLCSSAGLY---DPHGDPKV----FGDPYCTLFVGRLSHLTTEDTLRRAMSKYGQVKD 96
           R L CS+A  +    P  + +       +P   LFV  LS  TT + LR A +++G+V D
Sbjct: 25  RRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVAD 84

Query: 97  LRLVRHIVTGSSRGYAFVEYETEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMS 144
            ++V   V+G S+G+ FV Y T ++  +         +D   I  +Y R R  S
Sbjct: 85  AKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQS 138

The following BLAST results are available for this feature:
BLAST of IVF0009980 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VY744.5e-9860.76U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Arabidopsis thaliana O... [more]
Q165605.5e-4848.36U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens OX=9606 G... [more]
Q9D3841.6e-4750.96U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus OX=10090 ... [more]
Q5U1W58.8e-4645.10U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus OX=1... [more]
Q1LZH03.3e-4546.06U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus OX=9913 GN=... [more]
BLAST of IVF0009980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VKF16.3e-188100.00U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Cucumis melo var. maku... [more]
A0A1S3AXF13.8e-18598.80U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Cucumis melo OX=3656 G... [more]
A0A1S4DT111.8e-18298.20U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Cucumis melo OX=3656 G... [more]
A0A6J1C9C62.5e-15284.43U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Momordica charantia OX... [more]
A0A6J1IB256.1e-15184.68U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Cucurbita maxima OX=36... [more]
BLAST of IVF0009980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067647.11.98e-240100.00U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cucumis melo ... [more]
XP_008439055.19.04e-23798.80PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cu... [more]
XP_016899124.11.89e-23398.20PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X2 [Cu... [more]
XP_004147652.23.03e-23096.70U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cucumis sativ... [more]
XP_038876781.17.17e-21892.19U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Benincasa hispida][more]
BLAST of IVF0009980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43370.13.2e-9960.76RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G50670.11.0e-2030.46U1 small nuclear ribonucleoprotein-70K [more]
AT1G73530.11.8e-0935.71RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G21660.24.0e-0934.21cold, circadian rhythm, and rna binding 2 [more]
AT5G54580.14.0e-0930.70RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 62..135
e-value: 3.9E-21
score: 86.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 63..132
e-value: 2.2E-18
score: 65.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 61..139
score: 16.159025
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 48..168
e-value: 2.1E-31
score: 110.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..333
NoneNo IPR availablePANTHERPTHR13952:SF6U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEINcoord: 5..253
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 5..253
IPR034146snRNP35, RNA recognition motifCDDcd12237RRM_snRNP35coord: 58..147
e-value: 2.3355E-50
score: 160.887
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 49..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009980.1IVF0009980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding