IVF0009963 (gene) Melon (IVF77) v1

Overview
NameIVF0009963
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTranslation initiation factor IF-1, chloroplastic
Locationchr07: 4199667 .. 4199905 (-)
RNA-Seq ExpressionIVF0009963
SyntenyIVF0009963
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGCAAAAAAGGATTTCTGAAGGTTTCATTACTGAATCACCTACCAATGATATGTTTTGGATTTGTTTATATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCAACATAGTTTGATCCATATACTAGGTTATAGGGAGTCAAAATTTCAGTAAGTTGTTATGATTCAACCAAGACTAGAAGACGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

mRNA sequence

ATGAAAAAGCAAAAAAGGATTTCTGAAGGTTTCATTACTGAATCACCTACCAATGATATGTTTTGGATTTGTTTATATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCAACATATAAGTTGTTATGATTCAACCAAGACTAGAAGACGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

Coding sequence (CDS)

ATGAAAAAGCAAAAAAGGATTTCTGAAGGTTTCATTACTGAATCACCTACCAATGATATGTTTTGGATTTGTTTATATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCAACATATAAGTTGTTATGATTCAACCAAGACTAGAAGACGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

Protein sequence

MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHISCYDSTKTRRRIIYRLRNKDSND
Homology
BLAST of IVF0009963 vs. ExPASy Swiss-Prot
Match: A5J1W9 (Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus OX=3659 GN=infA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-25
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKT 60
          MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+H          +SCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 66
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

BLAST of IVF0009963 vs. ExPASy Swiss-Prot
Match: P08698 (Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=infA PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-15
Identity = 48/79 (60.76%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYD 60
          MK+QK I EG ITES  N MFW+ L NEDPILGYVSGRI+               +S YD
Sbjct: 1  MKEQKWIHEGLITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRILPGDRVKIEVSRYD 60

Query: 61 STKTRRRIIYRLRNKDSND 66
          S  TR RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

BLAST of IVF0009963 vs. ExPASy Swiss-Prot
Match: Q95GN8 (Translation initiation factor IF-1, chloroplastic OS=Cabomba caroliniana OX=4426 GN=infA PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-14
Identity = 46/79 (58.23%), Postives = 51/79 (64.56%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYD 60
          MK+QK I EG ITES  N MFW+ L NED +LGYVSGRI+               +S YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRRRIIYRLRNKDSND 66
          S  TR RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

BLAST of IVF0009963 vs. ExPASy Swiss-Prot
Match: A1XFZ0 (Translation initiation factor IF-1, chloroplastic OS=Nuphar advena OX=77108 GN=infA PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-14
Identity = 46/79 (58.23%), Postives = 51/79 (64.56%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYD 60
          MK+QK I EG ITES  N MFW+ L NED +LGYVSGRI+               +S YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRRRIIYRLRNKDSND 66
          S  TR RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

BLAST of IVF0009963 vs. ExPASy Swiss-Prot
Match: Q6EW17 (Translation initiation factor IF-1, chloroplastic OS=Nymphaea alba OX=34301 GN=infA PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-14
Identity = 46/79 (58.23%), Postives = 51/79 (64.56%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYD 60
          MK+QK I EG ITES  N MFW+ L NED +LGYVSGRI+               +S YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRRRIIYRLRNKDSND 66
          S  TR RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

BLAST of IVF0009963 vs. ExPASy TrEMBL
Match: A0A6M8YGU1 (Translational initiation factor 1 OS=Cucumis melo subsp. agrestis OX=217619 GN=infA PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.5e-24
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKT 60
          MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQH          +SCYDST+T
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 66
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

BLAST of IVF0009963 vs. ExPASy TrEMBL
Match: G3ETT2 (Translational initiation factor 1 OS=Cucumis melo subsp. melo OX=412675 GN=infA PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.5e-24
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKT 60
          MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQH          +SCYDST+T
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 66
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

BLAST of IVF0009963 vs. ExPASy TrEMBL
Match: A0A1S4EU46 (translational initiation factor 1 OS=Cucumis melo OX=3656 GN=infA PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.5e-24
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKT 60
          MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQH          +SCYDST+T
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 66
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

BLAST of IVF0009963 vs. ExPASy TrEMBL
Match: A0A1X9Q1P3 (Translation initiation factor 1 OS=Cucumis sativus OX=3659 GN=infA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKT 60
          MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+H          +SCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 66
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

BLAST of IVF0009963 vs. ExPASy TrEMBL
Match: A0A343UM67 (InfA OS=Cucumis sativus var. sativus OX=869827 GN=infA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKT 60
          MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+H          +SCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 66
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

BLAST of IVF0009963 vs. NCBI nr
Match: YP_004841818.1 (translational initiation factor 1 [Cucumis melo subsp. melo] >YP_009860108.1 translational initiation factor 1 [Cucumis melo subsp. agrestis] >AEM76927.1 translational initiation factor 1 [Cucumis melo subsp. melo] >QKK36691.1 translational initiation factor 1 [Cucumis melo subsp. agrestis])

HSP 1 Score: 116 bits (290), Expect = 2.90e-32
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKT 60
          MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQH          +SCYDST+T
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 65
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

BLAST of IVF0009963 vs. NCBI nr
Match: A5J1W9.1 (RecName: Full=Translation initiation factor IF-1, chloroplastic [Cucumis sativus] >AVE15366.1 InfA [Cucumis sativus var. sativus] >ABI97451.1 translation initiation factor 1 [Cucumis sativus] >ABI98780.1 translational initiation factor 1 [Cucumis sativus] >ARQ16113.1 translation initiation factor 1 [Cucumis sativus] >ARQ16196.1 translation initiation factor 1 [Cucumis sativus])

HSP 1 Score: 112 bits (281), Expect = 6.84e-31
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKT 60
          MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+H          +SCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 65
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

BLAST of IVF0009963 vs. NCBI nr
Match: QJA16179.1 (translational initiation factor 1 [Siraitia grosvenorii])

HSP 1 Score: 98.2 bits (243), Expect = 4.29e-25
Identity = 51/75 (68.00%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH----------ISCYDSTKT 60
          MK+QKRI EG ITES  N MFW+CL N DPILGYVSGRI+H          +S YDST+T
Sbjct: 1  MKEQKRIYEGLITESLPNGMFWVCLDNGDPILGYVSGRIRHSFIHILGKIAVSSYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 65
          R RIIYRLRNKDSND
Sbjct: 61 RGRIIYRLRNKDSND 75

BLAST of IVF0009963 vs. NCBI nr
Match: ASY96339.1 (translation initiation factor 1 [Cucumis melo subsp. agrestis])

HSP 1 Score: 83.6 bits (205), Expect = 1.60e-19
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH 41
          MK+QKRISEG ITESPTNDMFW+CL NEDPILGYVSGRIQH
Sbjct: 1  MKEQKRISEGLITESPTNDMFWVCLDNEDPILGYVSGRIQH 41

BLAST of IVF0009963 vs. NCBI nr
Match: NP_054969.2 (translation initiation factor 1 [Spinacia oleracea] >P08698.1 RecName: Full=Translation initiation factor IF-1, chloroplastic [Spinacia oleracea] >CAA27212.1 unnamed protein product [Spinacia oleracea])

HSP 1 Score: 80.5 bits (197), Expect = 4.67e-18
Identity = 48/79 (60.76%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQH--------------ISCYD 60
          MK+QK I EG ITES  N MFW+ L NEDPILGYVSGRI+               +S YD
Sbjct: 1  MKEQKWIHEGLITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRILPGDRVKIEVSRYD 60

Query: 61 STKTRRRIIYRLRNKDSND 65
          ST  R RIIYRLRNKDSND
Sbjct: 61 ST--RGRIIYRLRNKDSND 77

BLAST of IVF0009963 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 48.5 bits (114), Expect = 2.3e-06
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 0

Query: 5   KRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQ--------------HISCYDSTKT 63
           K + EG +TES  N MF + L N D ILGY+ G+I+               +S YDSTK 
Sbjct: 72  KTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEMSVYDSTK- 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A5J1W92.9e-2574.67Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus OX=3659 GN=... [more]
P086981.6e-1560.76Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea OX=3562 G... [more]
Q95GN82.3e-1458.23Translation initiation factor IF-1, chloroplastic OS=Cabomba caroliniana OX=4426... [more]
A1XFZ02.3e-1458.23Translation initiation factor IF-1, chloroplastic OS=Nuphar advena OX=77108 GN=i... [more]
Q6EW172.3e-1458.23Translation initiation factor IF-1, chloroplastic OS=Nymphaea alba OX=34301 GN=i... [more]
Match NameE-valueIdentityDescription
A0A6M8YGU19.5e-2477.33Translational initiation factor 1 OS=Cucumis melo subsp. agrestis OX=217619 GN=i... [more]
G3ETT29.5e-2477.33Translational initiation factor 1 OS=Cucumis melo subsp. melo OX=412675 GN=infA ... [more]
A0A1S4EU469.5e-2477.33translational initiation factor 1 OS=Cucumis melo OX=3656 GN=infA PE=3 SV=1[more]
A0A1X9Q1P31.1e-2274.67Translation initiation factor 1 OS=Cucumis sativus OX=3659 GN=infA PE=3 SV=1[more]
A0A343UM671.1e-2274.67InfA OS=Cucumis sativus var. sativus OX=869827 GN=infA PE=3 SV=1[more]
Match NameE-valueIdentityDescription
YP_004841818.12.90e-3277.33translational initiation factor 1 [Cucumis melo subsp. melo] >YP_009860108.1 tra... [more]
A5J1W9.16.84e-3174.67RecName: Full=Translation initiation factor IF-1, chloroplastic [Cucumis sativus... [more]
QJA16179.14.29e-2568.00translational initiation factor 1 [Siraitia grosvenorii][more]
ASY96339.11.60e-1990.24translation initiation factor 1 [Cucumis melo subsp. agrestis][more]
NP_054969.24.67e-1860.76translation initiation factor 1 [Spinacia oleracea] >P08698.1 RecName: Full=Tran... [more]
Match NameE-valueIdentityDescription
AT4G11175.12.3e-0640.28Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..65
e-value: 3.5E-5
score: 25.3
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009963.2IVF0009963.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0009507 chloroplast
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003743 translation initiation factor activity