IVF0009958 (gene) Melon (IVF77) v1

Overview


Name	IVF0009958
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr05: 2577901 .. 2578182 (-)
RNA-Seq Expression	IVF0009958
Synteny	IVF0009958

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGCCTTGAAATTTCTGTCATCTCTCCAGAAAAAGGTGGGGGAGACGAACACGCCAGTGGAAAGGGGATTAATGTACGTTGACACCTGGATCAACCAAAAGCCAACCAAAAGCACTATGGTTGACTCCGGTGCCACCCACAATTTCATAACAGAAGTAGAAGCTAAACGTTTGAATCTCCGCTGGGAGAAGGATGCTGGAAGAATGAAAGCCGTGAATTCTGCTGCCCTACCTATCATCGGACTAGTGAAACGAACGATGATAAGATTGGGAGGATGA

mRNA sequence

ATGGGGGCCTTGAAATTTCTGTCATCTCTCCAGAAAAAGGTGGGGGAGACGAACACGCCAGTGGAAAGGGGATTAATGTACGTTGACACCTGGATCAACCAAAAGCCAACCAAAAGCACTATGGTTGACTCCGGTGCCACCCACAATTTCATAACAGAAGTAGAAGCTAAACGTTTGAATCTCCGCTGGGAGAAGGATGCTGGAAGAATGAAAGCCGTGAATTCTGCTGCCCTACCTATCATCGGACTAGTGAAACGAACGATGATAAGATTGGGAGGATGA

Coding sequence (CDS)

ATGGGGGCCTTGAAATTTCTGTCATCTCTCCAGAAAAAGGTGGGGGAGACGAACACGCCAGTGGAAAGGGGATTAATGTACGTTGACACCTGGATCAACCAAAAGCCAACCAAAAGCACTATGGTTGACTCCGGTGCCACCCACAATTTCATAACAGAAGTAGAAGCTAAACGTTTGAATCTCCGCTGGGAGAAGGATGCTGGAAGAATGAAAGCCGTGAATTCTGCTGCCCTACCTATCATCGGACTAGTGAAACGAACGATGATAAGATTGGGAGGATGA

Protein sequence

MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG

Homology

[Close]

BLAST of IVF0009958 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 60
           MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN
Sbjct: 441 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 500

Query: 61  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 94
           LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG
Sbjct: 501 LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 533

[Close]

BLAST of IVF0009958 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 60
           MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN
Sbjct: 441 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 500

Query: 61  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 94
           LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG
Sbjct: 501 LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 533

[Close]

BLAST of IVF0009958 vs. ExPASy TrEMBL
Match: A0A5D3DQ20 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007440 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 60
           MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN
Sbjct: 441 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 500

Query: 61  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 94
           LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG
Sbjct: 501 LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 533

[Close]

BLAST of IVF0009958 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 60
           MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN
Sbjct: 441 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 500

Query: 61  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 94
           LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG
Sbjct: 501 LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 533

[Close]

BLAST of IVF0009958 vs. ExPASy TrEMBL
Match: A0A5D3B7E7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00360 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 60
           MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN
Sbjct: 441 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 500

Query: 61  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 94
           LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG
Sbjct: 501 LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 533

[Close]

BLAST of IVF0009958 vs. NCBI nr
Match: KAA0064238.1 (Importin subunit alpha-2 [Cucumis melo var. makuwa] >TYK18608.1 Importin subunit alpha-2 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (450), Expect = 6.92e-56
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 60
          MGAL+FLSSLQKKVGETNTPVE+GLMYVDTWIN+KPTKSTMVDSGATHNFITE EAKRLN
Sbjct: 1  MGALEFLSSLQKKVGETNTPVEKGLMYVDTWINEKPTKSTMVDSGATHNFITEAEAKRLN 60

Query: 61 LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLG 92
          LRWEKDAGRMKAVNSAALPIIGLVK+TMIRLG
Sbjct: 61 LRWEKDAGRMKAVNSAALPIIGLVKQTMIRLG 92

[Close]

BLAST of IVF0009958 vs. NCBI nr
Match: KAA0061351.1 (uncharacterized protein E6C27_scaffold749G00340 [Cucumis melo var. makuwa] >TYK14704.1 uncharacterized protein E5676_scaffold692G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 6.70e-55
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1   MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 60
           MGALKFLSSLQKKVGETNTPVERGLMYVDTWIN+KPTKSTMVDSGATHNFITE EAKRLN
Sbjct: 132 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINEKPTKSTMVDSGATHNFITEAEAKRLN 191

Query: 61  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 93
           LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG
Sbjct: 192 LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 224

[Close]

BLAST of IVF0009958 vs. NCBI nr
Match: KAA0057286.1 (uncharacterized protein E6C27_scaffold280G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (474), Expect = 1.79e-54
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 60
           MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN
Sbjct: 441 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 500

Query: 61  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 93
           LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG
Sbjct: 501 LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 533

[Close]

BLAST of IVF0009958 vs. NCBI nr
Match: KAA0053473.1 (Aspartic peptidase, DDI1-type [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (439), Expect = 2.92e-54
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 60
          MGALKFLSSLQKKVGETN PVERGLMYVDTWINQKPTKS MVDSGATHNFITE EAKRLN
Sbjct: 1  MGALKFLSSLQKKVGETNKPVERGLMYVDTWINQKPTKSIMVDSGATHNFITEAEAKRLN 60

Query: 61 LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 93
          L WEKDAGRMK VNSAA PIIGLV+RTMIRLGG
Sbjct: 61 LHWEKDAGRMKVVNSAARPIIGLVQRTMIRLGG 93

[Close]

BLAST of IVF0009958 vs. NCBI nr
Match: TYK25585.1 (uncharacterized protein E5676_scaffold352G007440 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (474), Expect = 2.18e-53
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 60
           MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN
Sbjct: 441 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLN 500

Query: 61  LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 93
           LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG
Sbjct: 501 LRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGG 533

The following BLAST results are available for this feature:

BLAST of IVF0009958 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009958 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4R1	1.4e-44	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	1.4e-44	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3DQ20	1.4e-44	100.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T0E2	1.4e-44	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3B7E7	1.4e-44	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of IVF0009958 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064238.1	6.92e-56	94.57	Importin subunit alpha-2 [Cucumis melo var. makuwa] >TYK18608.1 Importin subunit...	[more]
KAA0061351.1	6.70e-55	97.85	uncharacterized protein E6C27_scaffold749G00340 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0057286.1	1.79e-54	100.00	uncharacterized protein E6C27_scaffold280G001270 [Cucumis melo var. makuwa]	[more]
KAA0053473.1	2.92e-54	92.47	Aspartic peptidase, DDI1-type [Cucumis melo var. makuwa]	[more]
TYK25585.1	2.18e-53	100.00	uncharacterized protein E5676_scaffold352G007440 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0009958 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 7..93 e-value: 8.4E-11 score: 43.7
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 23..76
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 28..93 e-value: 8.04875E-8 score: 43.8644

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009958.2	IVF0009958.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0003743	translation initiation factor activity