IVF0009921 (gene) Melon (IVF77) v1

Overview


Name	IVF0009921
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Seed nucellus-specific protein
Location	chr04: 19656548 .. 19657243 (-)
RNA-Seq Expression	IVF0009921
Synteny	IVF0009921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATCAGTAAGGTTCTCATTGCGATCCTCGTGGTCTCTGCAGTGGCAATGACACTTCTGGAAAATGTTGAAGGAGGAAGAGAAATGGCTCCGAAGAAACCAACTGCAAAAACTTATCCCCAAGAATTAGATGATAATTACGAGGGATATAAACCCAAGGAGGATTACGAGGGATACAAACCCAAGGAGGATTATGAATGTGATGGATACAAATACAAAGACAAAGATTGCTATGAATATGGCAACTGTGACAAATCTCCCTACAACGAGGATGTTGACCATCAATACAACTGGGGTCCGTATAAGAAACCGATAACAAAGCCGAAAGAGATGGGTGAAAAGTATGGAGTTCACCAGAGCTACCCCTGAAAAGCAGTGCTAAAGAAACCTCTACAAGCATAGAATTGCTTATGGGCTCTATGAATAAAATGTATGAAATATAATTAAGTCTTGCTTAATGGGATTGGTGCTTTAATAGATATGTAAGCATGGCCAAGGTAATGAATCAAAAATCTTTCTTAAAGGTCTACTATTTGGCCTCTCTTCATATTTCCAGTCATTTAGTTAGAACTTTCTCCAACATGATCCCAGAAACTAATTAGCAAGAGATAGTATATTGTCTTTCAAGATATGAGCACTAGGCTCTAAAAAGATTCAAACAAATATATACTATGATCATCAAATCAAAATCAG

mRNA sequence

ATGACGATCAGTAAGGTTCTCATTGCGATCCTCGTGGTCTCTGCAGTGGCAATGACACTTCTGGAAAATGTTGAAGGAGGAAGAGAAATGGCTCCGAAGAAACCAACTGCAAAAACTTATCCCCAAGAATTAGATGATAATTACGAGGGATATAAACCCAAGGAGGATTACGAGGGATACAAACCCAAGGAGGATTATGAATGTGATGGATACAAATACAAAGACAAAGATTGCTATGAATATGGCAACTGTGACAAATCTCCCTACAACGAGGATGTTGACCATCAATACAACTGGGGTCCGTATAAGAAACCGATAACAAAGCCGAAAGAGATGGGTGAAAAGTATGGAGTTCACCAGAGCTACCCCTGAAAAGCAGTGCTAAAGAAACCTCTACAAGCATAGAATTGCTTATGGGCTCTATGAATAAAATGTATGAAATATAATTAAGTCTTGCTTAATGGGATTGGTGCTTTAATAGATATGTAAGCATGGCCAAGGTAATGAATCAAAAATCTTTCTTAAAGGTCTACTATTTGGCCTCTCTTCATATTTCCAGTCATTTAGTTAGAACTTTCTCCAACATGATCCCAGAAACTAATTAGCAAGAGATAGTATATTGTCTTTCAAGATATGAGCACTAGGCTCTAAAAAGATTCAAACAAATATATACTATGATCATCAAATCAAAATCAG

Coding sequence (CDS)

ATGACGATCAGTAAGGTTCTCATTGCGATCCTCGTGGTCTCTGCAGTGGCAATGACACTTCTGGAAAATGTTGAAGGAGGAAGAGAAATGGCTCCGAAGAAACCAACTGCAAAAACTTATCCCCAAGAATTAGATGATAATTACGAGGGATATAAACCCAAGGAGGATTACGAGGGATACAAACCCAAGGAGGATTATGAATGTGATGGATACAAATACAAAGACAAAGATTGCTATGAATATGGCAACTGTGACAAATCTCCCTACAACGAGGATGTTGACCATCAATACAACTGGGGTCCGTATAAGAAACCGATAACAAAGCCGAAAGAGATGGGTGAAAAGTATGGAGTTCACCAGAGCTACCCCTGA

Protein sequence

MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGYKPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKYGVHQSYP

Homology

[Close]

BLAST of IVF0009921 vs. ExPASy TrEMBL
Match: A0A5A7VLH5 (Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00080 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.6e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY 60
           MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY
Sbjct: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY 60

Query: 61  KPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKYGVHQ 120
           KPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKYGVHQ
Sbjct: 61  KPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKYGVHQ 120

Query: 121 SYP 124
           SYP
Sbjct: 121 SYP 123

[Close]

BLAST of IVF0009921 vs. ExPASy TrEMBL
Match: A0A0A0L8T2 (Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 108/132 (81.82%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDN---------YEGY 60
           MTISKVL+AIL+VSA+AM  LENVEGGREMA KKPTAKTY QELD+N         YEGY
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPKEDYEGY 60

Query: 61  KPKEDYEGYKPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKE 120
           KPKEDYEGYKPKEDYECDGYKY DKDCYEYGNCDKSPYNED+DHQYNWGP KKPI KPKE
Sbjct: 61  KPKEDYEGYKPKEDYECDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKE 120

Query: 121 MGEKYGVHQSYP 124
           M +KYG HQSYP
Sbjct: 121 MAKKYGAHQSYP 132

[Close]

BLAST of IVF0009921 vs. ExPASy TrEMBL
Match: O22351 (Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 3   ISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGYKP 62
           + KVL+A+LV+SA+AM LLENVEGGREM  K+ TA  YP  L+         E YEGYKP
Sbjct: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLN---------EKYEGYKP 63

Query: 63  KEDYECDGYKYKDKDCYEYGNCDKSPYNEDV-DHQYNWGPYKKPITKPKEMGEKYGVHQS 122
           KEDYECDGYKYKDK+CYEYGNCDKSPYNE+  D QYN  PYKKPI KPKEM  KYGVH +
Sbjct: 64  KEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHN 116

Query: 123 YP 124
           +P
Sbjct: 124 FP 116

[Close]

BLAST of IVF0009921 vs. ExPASy TrEMBL
Match: A0A0A0KAR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109680 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.8e-24
Identity = 66/125 (52.80%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY 60
           MT  K L+A+L  S +AM  +ENVEG R+M  K+ T     Q L++  E Y P ED    
Sbjct: 2   MTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKME-YNPNED---- 61

Query: 61  KPKEDYECDGYKYKDKDCYEYGNCDKSPY--NEDVDHQYNWGPYKKPITKPKEMGEKYGV 120
               +Y+CDGYKYKDKDCY+YGNCDKSPY  ++D D QYNW  YK P+ KPKE+ EKY V
Sbjct: 62  ----EYDCDGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKV 117

Query: 121 HQSYP 124
           H+++P
Sbjct: 122 HKNFP 117

[Close]

BLAST of IVF0009921 vs. ExPASy TrEMBL
Match: A0A5D3CS37 (Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00050 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 63/116 (54.31%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY 60
           M I K L+A+L +S + M  +ENVEGGREM  K+ T           Y G+   E+ + Y
Sbjct: 2   MMIGKNLVAVLAISTLVMMFMENVEGGREMGLKEATKA---------YNGHVSNENVD-Y 61

Query: 61  KPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKY 117
           KPKE+  CDGYKYKDKDCYEYGNC KSPY +  D QYNW  + KP+ KPKEM EKY
Sbjct: 62  KPKEEDGCDGYKYKDKDCYEYGNCGKSPYPDYDDGQYNWNSHMKPVPKPKEMDEKY 107

[Close]

BLAST of IVF0009921 vs. NCBI nr
Match: KAA0068070.1 (Seed nucellus-specific protein [Cucumis melo var. makuwa] >TYK26054.1 Seed nucellus-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 254 bits (648), Expect = 3.43e-85
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY 60
           MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY
Sbjct: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY 60

Query: 61  KPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKYGVHQ 120
           KPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKYGVHQ
Sbjct: 61  KPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKYGVHQ 120

Query: 121 SYP 123
           SYP
Sbjct: 121 SYP 123

[Close]

BLAST of IVF0009921 vs. NCBI nr
Match: KAE8650853.1 (hypothetical protein Csa_001704, partial [Cucumis sativus])

HSP 1 Score: 200 bits (508), Expect = 7.72e-64
Identity = 100/123 (81.30%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY 60
           MTISKVL+AIL+VSA+AM  LENVEGGREMA KKPTAKTY QELD+NYEGYKPKEDYEGY
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPKEDYEGY 60

Query: 61  KPKEDYE---------CDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKE 114
           KPKEDYE         CDGYKY DKDCYEYGNCDKSPYNED+DHQYNWGP KKPI KPKE
Sbjct: 61  KPKEDYEGYKPKEDYECDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKE 120

[Close]

BLAST of IVF0009921 vs. NCBI nr
Match: AAB82329.1 (seed nucellus-specific protein [Citrullus lanatus])

HSP 1 Score: 162 bits (411), Expect = 3.74e-49
Identity = 82/122 (67.21%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 3   ISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGYKP 62
           + KVL+A+LV+SA+AM LLENVEGGREM  K+ TA  YP  L++ YEGYKPKEDYE    
Sbjct: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYE---- 63

Query: 63  KEDYECDGYKYKDKDCYEYGNCDKSPYNEDVD-HQYNWGPYKKPITKPKEMGEKYGVHQS 122
                CDGYKYKDK+CYEYGNCDKSPYNE+ D  QYN  PYKKPI KPKEM  KYGVH +
Sbjct: 64  -----CDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHN 116

[Close]

BLAST of IVF0009921 vs. NCBI nr
Match: KGN46573.1 (hypothetical protein Csa_005092 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 3.65e-33
Identity = 66/125 (52.80%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY 60
           MT  K L+A+L  S +AM  +ENVEG R+M  K+ T     Q L++  E Y P ED    
Sbjct: 2   MTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKME-YNPNED---- 61

Query: 61  KPKEDYECDGYKYKDKDCYEYGNCDKSPYN--EDVDHQYNWGPYKKPITKPKEMGEKYGV 120
               +Y+CDGYKYKDKDCY+YGNCDKSPY+  +D D QYNW  YK P+ KPKE+ EKY V
Sbjct: 62  ----EYDCDGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKV 117

Query: 121 HQSYP 123
           H+++P
Sbjct: 122 HKNFP 117

[Close]

BLAST of IVF0009921 vs. NCBI nr
Match: TYK14008.1 (Seed nucellus-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 3.54e-30
Identity = 63/116 (54.31%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGY 60
           M I K L+A+L +S + M  +ENVEGGREM  K+ T           Y G+   E+ + Y
Sbjct: 2   MMIGKNLVAVLAISTLVMMFMENVEGGREMGLKEATKA---------YNGHVSNENVD-Y 61

Query: 61  KPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKY 116
           KPKE+  CDGYKYKDKDCYEYGNC KSPY +  D QYNW  + KP+ KPKEM EKY
Sbjct: 62  KPKEEDGCDGYKYKDKDCYEYGNCGKSPYPDYDDGQYNWNSHMKPVPKPKEMDEKY 107

The following BLAST results are available for this feature:

BLAST of IVF0009921 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLH5	3.6e-64	100.00	Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0L8T2	1.7e-53	81.82	Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 S...	[more]
O22351	1.1e-36	68.03	Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1	[more]
A0A0A0KAR7	2.8e-24	52.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109680 PE=4 SV=1	[more]
A0A5D3CS37	3.4e-22	54.31	Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of IVF0009921 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068070.1	3.43e-85	100.00	Seed nucellus-specific protein [Cucumis melo var. makuwa] >TYK26054.1 Seed nucel...	[more]
KAE8650853.1	7.72e-64	81.30	hypothetical protein Csa_001704, partial [Cucumis sativus]	[more]
AAB82329.1	3.74e-49	67.21	seed nucellus-specific protein [Citrullus lanatus]	[more]
KGN46573.1	3.65e-33	52.80	hypothetical protein Csa_005092 [Cucumis sativus]	[more]
TYK14008.1	3.54e-30	54.31	Seed nucellus-specific protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0009921 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009921.2	IVF0009921.2	mRNA