IVF0009901 (gene) Melon (IVF77) v1

Overview


Name	IVF0009901
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S7, chloroplastic
Location	chr05: 20054771 .. 20055239 (-)
RNA-Seq Expression	IVF0009901
Synteny	IVF0009901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATGTCGAGGTACTGCAGAAGAAACAATTGCAAAATTCGATCCAATTTATTATAATCGATCAGTTAACATGTTGGTTAACCGTATTTTAAAACATGGAAAGAAATCATTGGCTTATCAAATTACCTATCGAGCCATGAAAAAAGATTCAACAAAAGACATAAACAAATCCACTATCTGTTTTATGTCAAACAATATGTGGAGTAACTCCCGATATAGTAGTAAAGGCAAGATGTGTAGGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAAGAAAAGCATTTGCCATTCGTTGGTTATTAAGAGCATCCCGAAAATGTCGGGGTCGAAATATCGCTTTCAAATTAAGTTCTGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAGAAAGGAAGAGACTCATAGAATGGCAAAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

mRNA sequence

ATGTCATGTCGAGGTACTGCAGAAGAAACAATTGCAAAATTCGATCCAATTTATTATAATCGATCAGTTAACATGTTGGTTAACCGTATTTTAAAACATGGAAAGAAATCATTGGCTTATCAAATTACCTATCGAGCCATGAAAAAAGATTCAACAAAAGACATAAACAAATCCACTATCTTAGTAAAGGCAAGATGTGTAGGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAAGAAAAGCATTTGCCATTCGTTGGTTATTAAGAGCATCCCGAAAATGTCGGGGTCGAAATATCGCTTTCAAATTAAGTTCTGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAGAAAGGAAGAGACTCATAGAATGGCAAAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Coding sequence (CDS)

ATGTCATGTCGAGGTACTGCAGAAGAAACAATTGCAAAATTCGATCCAATTTATTATAATCGATCAGTTAACATGTTGGTTAACCGTATTTTAAAACATGGAAAGAAATCATTGGCTTATCAAATTACCTATCGAGCCATGAAAAAAGATTCAACAAAAGACATAAACAAATCCACTATCTTAGTAAAGGCAAGATGTGTAGGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAAGAAAAGCATTTGCCATTCGTTGGTTATTAAGAGCATCCCGAAAATGTCGGGGTCGAAATATCGCTTTCAAATTAAGTTCTGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAGAAAGGAAGAGACTCATAGAATGGCAAAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Protein sequence

MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTKDINKSTILVKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKLSSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR

Homology

[Close]

BLAST of IVF0009901 vs. ExPASy Swiss-Prot
Match: Q49KT8 (30S ribosomal protein S7, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps7-A PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.7e-52
Identity = 117/155 (75.48%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRAMKK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. ExPASy Swiss-Prot
Match: Q6EM99 (30S ribosomal protein S7, chloroplastic OS=Euonymus alatus OX=4307 GN=rps7 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.7e-52
Identity = 117/155 (75.48%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRAMKK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAMKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. ExPASy Swiss-Prot
Match: B1NWJ5 (30S ribosomal protein S7, chloroplastic OS=Manihot esculenta OX=3983 GN=rps7-A PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.7e-52
Identity = 117/155 (75.48%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRAMKK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. ExPASy Swiss-Prot
Match: P07135 (30S ribosomal protein S7, chloroplastic OS=Glycine max OX=3847 GN=rps7-A PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.5e-52
Identity = 116/155 (74.84%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRAMKK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVP+EIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPVEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. ExPASy Swiss-Prot
Match: A4QJG0 (30S ribosomal protein S7, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps7-A PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.0e-52
Identity = 116/155 (74.84%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRA+KK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. ExPASy TrEMBL
Match: A0A287QT24 (Ribosomal protein S7 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.1e-51
Identity = 115/142 (80.99%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTKDINKSTI 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRAMKK   K      I
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTALTPDI 60

Query: 61  LVKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKLSSELVDAAKGSGD 120
            VKAR VGGSTHQVPIEIGS Q KA AIRWLL ASRK  GRN+AFKLSSELVDAAKGSGD
Sbjct: 61  AVKARRVGGSTHQVPIEIGSAQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGD 120

Query: 121 AIRRKEETHRMAKANRAFAHFR 143
           AIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 AIRKKEETHRMAEANRAFAHFR 142

[Close]

BLAST of IVF0009901 vs. ExPASy TrEMBL
Match: A0A0S1RS49 (30S ribosomal protein S7, chloroplastic OS=Polygonatum cyrtonema OX=195526 GN=rps7 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.2e-50
Identity = 117/155 (75.48%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRA+KK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAVKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRKC GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKCPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. ExPASy TrEMBL
Match: A0A6M8AW23 (30S ribosomal protein S7, chloroplastic OS=Garcinia pedunculata OX=1220708 GN=rps7 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.2e-50
Identity = 117/155 (75.48%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRAMKK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKARCVGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARCVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKG GDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGGGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. ExPASy TrEMBL
Match: A0A6C0MD51 (Ribosomal protein S7 OS=Begonia guangxiensis OX=1045248 GN=rps7 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.5e-50
Identity = 118/155 (76.13%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE IAK DPIY NR VNMLVNRILKHGKKSLAYQI+YRAMKK   K + N  +
Sbjct: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQISYRAMKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. ExPASy TrEMBL
Match: H9TUI0 (Ribosomal protein S7 (Fragment) OS=Iris virginica OX=292533 GN=rps7 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.5e-50
Identity = 118/155 (76.13%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRAMKK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLLRASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLRASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. NCBI nr
Match: YP_009861937.1 (ribosomal protein S7 [Garcinia pedunculata] >YP_009861949.1 ribosomal protein S7 [Garcinia pedunculata] >QKD75955.1 ribosomal protein S7 [Garcinia pedunculata] >QKD75967.1 ribosomal protein S7 [Garcinia pedunculata])

HSP 1 Score: 207 bits (526), Expect = 8.51e-66
Identity = 117/155 (75.48%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRAMKK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKARCVGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARCVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 142
           SSELVDAAKG GDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGGGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. NCBI nr
Match: YP_009180153.1 (ribosomal protein S7 [Polygonatum cyrtonema] >YP_009180165.1 ribosomal protein S7 [Polygonatum cyrtonema] >ALL96508.1 ribosomal protein S7 [Polygonatum cyrtonema] >ALL96509.1 ribosomal protein S7 [Polygonatum cyrtonema])

HSP 1 Score: 207 bits (526), Expect = 8.51e-66
Identity = 117/155 (75.48%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRA+KK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAVKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRKC GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKCPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 142
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. NCBI nr
Match: YP_010120880.1 (ribosomal protein S7 [Iris pseudacorus] >YP_010120894.1 ribosomal protein S7 [Iris pseudacorus] >AFG25696.1 ribosomal protein S7, partial [Iris virginica] >QRC77407.1 ribosomal protein S7 [Iris pseudacorus] >QRC77423.1 ribosomal protein S7 [Iris pseudacorus])

HSP 1 Score: 206 bits (525), Expect = 1.21e-65
Identity = 118/155 (76.13%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRAMKK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLLRASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLRASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 142
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. NCBI nr
Match: YP_009733688.1 (ribosomal protein S7 [Begonia guangxiensis] >YP_009733701.1 ribosomal protein S7 [Begonia guangxiensis] >QHV34436.1 ribosomal protein S7 [Begonia guangxiensis] >QHV34451.1 ribosomal protein S7 [Begonia guangxiensis])

HSP 1 Score: 206 bits (525), Expect = 1.21e-65
Identity = 118/155 (76.13%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE IAK DPIY NR VNMLVNRILKHGKKSLAYQI+YRAMKK   K + N  +
Sbjct: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQISYRAMKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 142
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. NCBI nr
Match: KAD7117010.1 (hypothetical protein E3N88_04278 [Mikania micrantha])

HSP 1 Score: 206 bits (524), Expect = 1.72e-65
Identity = 116/155 (74.84%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MSCRGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRA+KK   K + N  +
Sbjct: 1   MSCRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAVKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIHGVTPGIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLAASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 142
           SSELVDAAKGSGDAIR++EETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKREETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. TAIR 10
Match: ATCG01240.1 (ribosomal protein S7 )

HSP 1 Score: 204.9 bits (520), Expect = 4.3e-53
Identity = 116/155 (74.84%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRA+KK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. TAIR 10
Match: ATCG00900.1 (Ribosomal protein S7p/S5e family protein )

HSP 1 Score: 204.9 bits (520), Expect = 4.3e-53
Identity = 116/155 (74.84%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MSCRGTAEETIAKFDPIYYNRSVNMLVNRILKHGKKSLAYQITYRAMKKDSTK-DINKST 60
           MS RGTAEE  AK DPIY NR VNMLVNRILKHGKKSLAYQI YRA+KK   K + N  +
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLS 60

Query: 61  IL------------VKARCVGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKL 120
           +L            VKAR VGGSTHQVPIEIGSTQ KA AIRWLL ASRK  GRN+AFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRRKEETHRMAKANRAFAHFR 143
           SSELVDAAKGSGDAIR+KEETHRMA+ANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of IVF0009901 vs. TAIR 10
Match: AT2G07696.1 (Ribosomal protein S7p/S5e family protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-09
Identity = 42/138 (30.43%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 23  VNMLVNRILKHGKKSLAYQITYRAM------KKDSTKDINKSTILVKARC------VGGS 82
           +  LVN  +K GK++    I Y+        ++D  K +  +   +K  C      V G+
Sbjct: 12  IKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPICEVAKVGVAGT 71

Query: 83  THQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKLS------SELVDAAKGSGDAIRR 142
            + VP  +   +++  AIRW+L A+ K   R I++++S      +E++DA +  G A R+
Sbjct: 72  IYDVPGIVARDRQQTLAIRWILEAAFK---RRISYRISLEKCSFAEILDAYQKRGSARRK 131

[Close]

BLAST of IVF0009901 vs. TAIR 10
Match: ATMG01270.1 (mitochondrial ribosomal protein S7 )

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-09
Identity = 42/138 (30.43%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 23  VNMLVNRILKHGKKSLAYQITYRAM------KKDSTKDINKSTILVKARC------VGGS 82
           +  LVN  +K GK++    I Y+        ++D  K +  +   +K  C      V G+
Sbjct: 12  IKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPICEVAKVGVAGT 71

Query: 83  THQVPIEIGSTQRKAFAIRWLLRASRKCRGRNIAFKLS------SELVDAAKGSGDAIRR 142
            + VP  +   +++  AIRW+L A+ K   R I++++S      +E++DA +  G A R+
Sbjct: 72  IYDVPGIVARDRQQTLAIRWILEAAFK---RRISYRISLEKCSFAEILDAYQKRGSARRK 131

[Close]

BLAST of IVF0009901 vs. TAIR 10
Match: AT2G37270.1 (ribosomal protein 5B )

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 43/136 (31.62%), Postives = 66/136 (48.53%), Query Frame = 0


Query: 23  VNMLVNRILKH----GKKSLAYQITYRAMK-KDSTKDINKSTILVKARC----------- 82
           V  L N ++ H    GKK +A +I   AM+      D+N   +++ A             
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131

Query: 83  -VGGSTHQVPIEIGSTQRKAFAIRWLLRASRKCRGRN---IAFKLSSELVDAAKGSGD-- 137
              G   +  ++I   +R   AI  L   +R+   RN   IA  L+ EL++AAKGS +  
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 191

The following BLAST results are available for this feature:

BLAST of IVF0009901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KT8	2.7e-52	75.48	30S ribosomal protein S7, chloroplastic OS=Eucalyptus globulus subsp. globulus O...	[more]
Q6EM99	2.7e-52	75.48	30S ribosomal protein S7, chloroplastic OS=Euonymus alatus OX=4307 GN=rps7 PE=3 ...	[more]
B1NWJ5	2.7e-52	75.48	30S ribosomal protein S7, chloroplastic OS=Manihot esculenta OX=3983 GN=rps7-A P...	[more]
P07135	3.5e-52	74.84	30S ribosomal protein S7, chloroplastic OS=Glycine max OX=3847 GN=rps7-A PE=3 SV...	[more]
A4QJG0	6.0e-52	74.84	30S ribosomal protein S7, chloroplastic OS=Aethionema cordifolium OX=434059 GN=r...	[more]

BLAST of IVF0009901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A287QT24	3.1e-51	80.99	Ribosomal protein S7 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]
A0A0S1RS49	1.2e-50	75.48	30S ribosomal protein S7, chloroplastic OS=Polygonatum cyrtonema OX=195526 GN=rp...	[more]
A0A6M8AW23	1.2e-50	75.48	30S ribosomal protein S7, chloroplastic OS=Garcinia pedunculata OX=1220708 GN=rp...	[more]
A0A6C0MD51	1.5e-50	76.13	Ribosomal protein S7 OS=Begonia guangxiensis OX=1045248 GN=rps7 PE=3 SV=1	[more]
H9TUI0	1.5e-50	76.13	Ribosomal protein S7 (Fragment) OS=Iris virginica OX=292533 GN=rps7 PE=3 SV=1	[more]

BLAST of IVF0009901 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009861937.1	8.51e-66	75.48	ribosomal protein S7 [Garcinia pedunculata] >YP_009861949.1 ribosomal protein S7...	[more]
YP_009180153.1	8.51e-66	75.48	ribosomal protein S7 [Polygonatum cyrtonema] >YP_009180165.1 ribosomal protein S...	[more]
YP_010120880.1	1.21e-65	76.13	ribosomal protein S7 [Iris pseudacorus] >YP_010120894.1 ribosomal protein S7 [Ir...	[more]
YP_009733688.1	1.21e-65	76.13	ribosomal protein S7 [Begonia guangxiensis] >YP_009733701.1 ribosomal protein S7...	[more]
KAD7117010.1	1.72e-65	74.84	hypothetical protein E3N88_04278 [Mikania micrantha]	[more]

BLAST of IVF0009901 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01240.1	4.3e-53	74.84	ribosomal protein S7	[more]
ATCG00900.1	4.3e-53	74.84	Ribosomal protein S7p/S5e family protein	[more]
AT2G07696.1	4.9e-09	30.43	Ribosomal protein S7p/S5e family protein	[more]
ATMG01270.1	4.9e-09	30.43	mitochondrial ribosomal protein S7	[more]
AT2G37270.1	2.1e-04	31.62	ribosomal protein 5B	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000235	Ribosomal protein S5/S7	PIRSF	PIRSF002122	RPS7p_RPS7a_RPS5e_RPS7o	coord: 2..142 e-value: 1.6E-33 score: 114.3
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 1..142
IPR036823	Ribosomal protein S7 domain superfamily	GENE3D	1.10.455.10	Ribosomal protein S7 domain	coord: 1..142 e-value: 8.8E-37 score: 128.0
IPR036823	Ribosomal protein S7 domain superfamily	SUPERFAMILY	47973	Ribosomal protein S7	coord: 4..139
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 4..136 e-value: 9.0E-32 score: 109.8
None	No IPR available	PANTHER	PTHR11205:SF41	30S RIBOSOMAL PROTEIN S7, CHLOROPLASTIC	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009901.1	IVF0009901.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome