IVF0009878 (gene) Melon (IVF77) v1

Overview


Name	IVF0009878
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr09: 13721340 .. 13721717 (+)
RNA-Seq Expression	IVF0009878
Synteny	IVF0009878

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTGTCCTTGGAAATCTCCCTGTTCGTTATCTTGGGCTTCCTTTACTTACTGGTCGGTTACGTTCTAATGATTGTGCACCTCTTATTCAGCGTATCACTAGCCGGATTCGCTCTTGGACTGCCGGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTCTGTGCTCCGCAGCCTTCAAGTTTACTGGACTAGTGTGTTTCTCCTTCCTGTGTCTGTGCATAATGAGGTGGACGAGATCCTAAGGTCTTATCTTTGGAGGGGTAAGGAGGAAGGTAGAGGGGGTATTAAGGTGGCGTGGGTGGAAGTGTGTCTACCCTTTGAGGAAGGCGGTCTTGCTTCCAAAGAGTGGCTAGTGCTAGTTCGGTGA

mRNA sequence

ATGGGTTTTGTCCTTGGAAATCTCCCTGTTCGTTATCTTGGGCTTCCTTTACTTACTGGTCGGTTACGTTCTAATGATTGTGCACCTCTTATTCAGCGTATCACTAGCCGGATTCGCTCTTGGACTGCCGGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTCTGTGCTCCGCAGCCTTCAAGTTTACTGGACTAGTGTGTTTCTCCTTCCTGTGTCTGTGCATAATGAGGTGGACGAGATCCTAAGGTCTTATCTTTGGAGGGGTAAGGAGGAAGGTAGAGGGGGTATTAAGGTGGCGTGGGTGGAAGTGTGTCTACCCTTTGAGGAAGGCGGTCTTGCTTCCAAAGAGTGGCTAGTGCTAGTTCGGTGA

Coding sequence (CDS)

ATGGGTTTTGTCCTTGGAAATCTCCCTGTTCGTTATCTTGGGCTTCCTTTACTTACTGGTCGGTTACGTTCTAATGATTGTGCACCTCTTATTCAGCGTATCACTAGCCGGATTCGCTCTTGGACTGCCGGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTCTGTGCTCCGCAGCCTTCAAGTTTACTGGACTAGTGTGTTTCTCCTTCCTGTGTCTGTGCATAATGAGGTGGACGAGATCCTAAGGTCTTATCTTTGGAGGGGTAAGGAGGAAGGTAGAGGGGGTATTAAGGTGGCGTGGGTGGAAGTGTGTCTACCCTTTGAGGAAGGCGGTCTTGCTTCCAAAGAGTGGCTAGTGCTAGTTCGGTGA

Protein sequence

MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKEWLVLVR

Homology

[Close]

BLAST of IVF0009878 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-15
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 15  LPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSLQVYWTSVFLLPV 74
           +P+L  R+  +    +++R++SR+  W    LSFAGRL L ++VL S+ V+  S  LLP 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 75  SVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGL 116
           S+ N +D++ R++LW    E +    V W +VC P +EGGL
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGL 101

[Close]

BLAST of IVF0009878 vs. ExPASy TrEMBL
Match: A0A5A7VHU9 (F17F8.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00030 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.5e-54
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 60
           MGFV GNLPVRYLGLPLL GRLRSNDCAPLIQR+TSRIRSWTA VLSF GRLQLVRSVLR
Sbjct: 661 MGFVFGNLPVRYLGLPLLIGRLRSNDCAPLIQRMTSRIRSWTAQVLSFVGRLQLVRSVLR 720

Query: 61  SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE 120
           SLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLA ++
Sbjct: 721 SLQVYWPSVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLAIRD 779

[Close]

BLAST of IVF0009878 vs. ExPASy TrEMBL
Match: A0A5A7SPE5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00620 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1    MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 60
            MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS+IRSW A VLSFAGRLQLVRSVLR
Sbjct: 1014 MGFARGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSQIRSWNARVLSFAGRLQLVRSVLR 1073

Query: 61   SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE 120
            SLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIKVAWV+VCLPFEEGG   ++
Sbjct: 1074 SLQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGFGIRD 1132

[Close]

BLAST of IVF0009878 vs. ExPASy TrEMBL
Match: A0A5D3DXE4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1467G00020 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1    MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 60
            MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS+IRSW A VLSFAGRLQLVRSVLR
Sbjct: 1014 MGFARGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSQIRSWNARVLSFAGRLQLVRSVLR 1073

Query: 61   SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE 120
            SLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIKVAWV+VCLPFEEGG   ++
Sbjct: 1074 SLQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGFGIRD 1132

[Close]

BLAST of IVF0009878 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.2e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1    MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 60
            MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR
Sbjct: 914  MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 973

Query: 61   SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVE 106
            SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVE
Sbjct: 974  SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVE 1018

[Close]

BLAST of IVF0009878 vs. ExPASy TrEMBL
Match: A0A5A7TWG5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00450 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.5e-51
Identity = 102/119 (85.71%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1    MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 60
            MGFV GNL VRYLGLPLLTGRL SNDCAPLIQRITS+IRSWTA VLSFAGR+QLV SVLR
Sbjct: 1114 MGFVRGNLSVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLR 1173

Query: 61   SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE 120
            SLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIKVAWV+VCLPFEEGGL  ++
Sbjct: 1174 SLQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGLGIRD 1232

[Close]

BLAST of IVF0009878 vs. NCBI nr
Match: KAA0065355.1 (F17F8.5 [Cucumis melo var. makuwa] >TYK20852.1 F17F8.5 [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (550), Expect = 3.24e-63
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 60
           MGFV GNLPVRYLGLPLL GRLRSNDCAPLIQR+TSRIRSWTA VLSF GRLQLVRSVLR
Sbjct: 661 MGFVFGNLPVRYLGLPLLIGRLRSNDCAPLIQRMTSRIRSWTAQVLSFVGRLQLVRSVLR 720

Query: 61  SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE 119
           SLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLA ++
Sbjct: 721 SLQVYWPSVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLAIRD 779

[Close]

BLAST of IVF0009878 vs. NCBI nr
Match: KAA0062333.1 (putative reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (525), Expect = 3.88e-61
Identity = 100/119 (84.03%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 60
           MGFVLGNLPVRYLGLPLL+GRLRS+DCAPLIQRITSRIRSW A V SFAGRLQL+R VLR
Sbjct: 194 MGFVLGNLPVRYLGLPLLSGRLRSSDCAPLIQRITSRIRSWFARVFSFAGRLQLIRYVLR 253

Query: 61  SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE 119
           SLQV+W SVF+LP  VHN+VD+ILRSYLWR KEEGRGG+KVAWVEVCLPFEEGGLA ++
Sbjct: 254 SLQVFWASVFVLPAYVHNKVDKILRSYLWRDKEEGRGGVKVAWVEVCLPFEEGGLAIRD 312

[Close]

BLAST of IVF0009878 vs. NCBI nr
Match: TYK28099.1 (uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (538), Expect = 1.33e-60
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1    MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 60
            MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS+IRSW A VLSFAGRLQLVRSVLR
Sbjct: 1014 MGFARGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSQIRSWNARVLSFAGRLQLVRSVLR 1073

Query: 61   SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE 119
            SLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIKVAWV+VCLPFEEGG   ++
Sbjct: 1074 SLQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGFGIRD 1132

[Close]

BLAST of IVF0009878 vs. NCBI nr
Match: KAA0026071.1 (uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (538), Expect = 1.33e-60
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1    MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 60
            MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS+IRSW A VLSFAGRLQLVRSVLR
Sbjct: 1014 MGFARGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSQIRSWNARVLSFAGRLQLVRSVLR 1073

Query: 61   SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE 119
            SLQVYW SVF+LP  VHNEVD+ILRSYLWRGKEEGRGGIKVAWV+VCLPFEEGG   ++
Sbjct: 1074 SLQVYWASVFVLPAYVHNEVDKILRSYLWRGKEEGRGGIKVAWVDVCLPFEEGGFGIRD 1132

[Close]

BLAST of IVF0009878 vs. NCBI nr
Match: XP_016902060.1 (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 204 bits (520), Expect = 3.07e-60
Identity = 102/119 (85.71%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MGFVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLR 60
           MGF LGNLPVRYLGLPLLTGRLRSNDCAPLIQRITS IRSWTA VLSF G LQLVRSVL 
Sbjct: 323 MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLH 382

Query: 61  SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE 119
           SLQVYW S+F+LP  VHNEVD+ILRSYLWRGKEEGRGG KVAWVEVCLPFEEG LA ++
Sbjct: 383 SLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFKVAWVEVCLPFEEGELAIQD 441

[Close]

BLAST of IVF0009878 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-28
Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 3   FVLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSRIRSWTAGVLSFAGRLQLVRSVLRSL 62
           F  G LPVRYLGLPLLT ++ ++D  PL+++I  RI  WTA  LSFAGRLQL+ SV+ SL
Sbjct: 18  FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 77

Query: 63  QVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGL 116
             +W S F LP +   E+D I  S+LW G E      KVAW +VC P +EGGL
Sbjct: 78  TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 130

[Close]

BLAST of IVF0009878 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.5e-04
Identity = 19/59 (32.20%), Postives = 31/59 (52.54%), Query Frame = 0


Query: 61  SLQVYWTSVFLLPVSVHNEVDEILRSYLWRGKEEGRGGIKVAWVEVCLPFEEGGLASKE 120
           +L  Y  + FLLP +V  ++  +L  + WR K+E +G    AW  +     EGG+  K+
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKD 60

The following BLAST results are available for this feature:

BLAST of IVF0009878 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	2.3e-15	38.61	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of IVF0009878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHU9	4.5e-54	89.08	F17F8.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00030 PE=4 S...	[more]
A0A5A7SPE5	1.1e-52	86.55	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DXE4	1.1e-52	86.55	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7V5J2	4.2e-52	100.00	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5A7TWG5	3.5e-51	85.71	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of IVF0009878 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065355.1	3.24e-63	89.08	F17F8.5 [Cucumis melo var. makuwa] >TYK20852.1 F17F8.5 [Cucumis melo var. makuwa...	[more]
KAA0062333.1	3.88e-61	84.03	putative reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK28099.1	1.33e-60	86.55	uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]	[more]
KAA0026071.1	1.33e-60	86.55	uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]	[more]
XP_016902060.1	3.07e-60	85.71	PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]	[more]

BLAST of IVF0009878 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24255.1	2.4e-28	53.10	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G29090.1	5.5e-04	32.20	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009878.1	IVF0009878.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003964	RNA-directed DNA polymerase activity