IVF0009854 (gene) Melon (IVF77) v1

Overview
NameIVF0009854
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Locationchr04: 12824905 .. 12825166 (-)
RNA-Seq ExpressionIVF0009854
SyntenyIVF0009854
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGGGAGAAAACGGCGACGATAGGTTGGATTGTTTGAGTGATTCGACAATCAAAAATCGTATACGGATGAGGTCTGAGGTCTGCGAGTGGTGGATGGCGGAGGAAGACGATGGCTAAGGTCTGGGAGTGGTGGATGGCAGAGGGAGACGACGGTGACGATTGGATTGAGAGAGACGACGTCGGAAGGCAGAGAGGCGGCGCAGATGGTCAAAATTGGGGATTTTTTTTGACACCTATAATTTGTGTCAAGAAATAA

mRNA sequence

ATGGACGAGGGAGAAAACGGCGACGATAGGTTGGATTGTTTGAGTGATTCGACAATCAAAAATCGTATACGGATGAGGAAGACGATGGCTAAGGTCTGGGAGTGGTGGATGGCAGAGGGAGACGACGGTGACGATTGGATTGAGAGAGACGACGTCGGAAGGCAGAGAGGCGGCGCAGATGGTCAAAATTGGGGATTTTTTTTGACACCTATAATTTGTGTCAAGAAATAA

Coding sequence (CDS)

ATGGACGAGGGAGAAAACGGCGACGATAGGTTGGATTGTTTGAGTGATTCGACAATCAAAAATCGTATACGGATGAGGAAGACGATGGCTAAGGTCTGGGAGTGGTGGATGGCAGAGGGAGACGACGGTGACGATTGGATTGAGAGAGACGACGTCGGAAGGCAGAGAGGCGGCGCAGATGGTCAAAATTGGGGATTTTTTTTGACACCTATAATTTGTGTCAAGAAATAA

Protein sequence

MDEGENGDDRLDCLSDSTIKNRIRMRKTMAKVWEWWMAEGDDGDDWIERDDVGRQRGGADGQNWGFFLTPIICVKK
Homology
[Close]
BLAST of IVF0009854 vs. ExPASy TrEMBL
Match: A0A5A7TGP5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold943G00120 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 44/62 (70.97%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1  MDEGENGDDRLDCLSDSTIKNRIRMRKTMAKVWEWWMAEGDDGDDWIERDDVGRQRGGAD 60
          MDEGENGDD                RKTMAKVWEWWMAEGDDGDDWIERDDV RQRGGAD
Sbjct: 1  MDEGENGDD----------------RKTMAKVWEWWMAEGDDGDDWIERDDVRRQRGGAD 46

Query: 61 GQ 63
           Q
Sbjct: 61 EQ 46

[Close]
BLAST of IVF0009854 vs. ExPASy TrEMBL
Match: A0A5D3CLW1 (Sulfiredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00580 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 26  RKTMAKVWEWWMAEGDDGDDWIERDDVGRQRGGADG 62
           R+T A+V EWWM EGDD DDWI+RD VGRQRGGA+G
Sbjct: 174 RETTAEVCEWWMTEGDDDDDWIKRDGVGRQRGGANG 209

[Close]
BLAST of IVF0009854 vs. NCBI nr
Match: KAA0042403.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 8.85e-18
Identity = 44/62 (70.97%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1  MDEGENGDDRLDCLSDSTIKNRIRMRKTMAKVWEWWMAEGDDGDDWIERDDVGRQRGGAD 60
          MDEGENGDDR                KTMAKVWEWWMAEGDDGDDWIERDDV RQRGGAD
Sbjct: 1  MDEGENGDDR----------------KTMAKVWEWWMAEGDDGDDWIERDDVRRQRGGAD 46

Query: 61 GQ 62
           Q
Sbjct: 61 EQ 46

[Close]
BLAST of IVF0009854 vs. NCBI nr
Match: KAA0043173.1 (sulfiredoxin [Cucumis melo var. makuwa] >TYK12292.1 sulfiredoxin [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.44e-09
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 26  RKTMAKVWEWWMAEGDDGDDWIERDDVGRQRGGADG 61
           R+T A+V EWWM EGDD DDWI+RD VGRQRGGA+G
Sbjct: 174 RETTAEVCEWWMTEGDDDDDWIKRDGVGRQRGGANG 209

[Close]
BLAST of IVF0009854 vs. NCBI nr
Match: KAA0041521.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK24394.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 3.00e-05
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 0 

Query: 16 DSTIKNRIRMRKTMAKVWEWWMAEGDDGDDWIERDDV-GRQ 55
          D   + R+R  +T  KV EWW AEGDDG DWIERD V GR+
Sbjct: 6  DGGGRKRLRSIETTTKVCEWWRAEGDDGGDWIERDGVEGRE 46

[Close]
BLAST of IVF0009854 vs. NCBI nr
Match: KAA0048296.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK10641.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 4.64e-05
Identity = 31/63 (49.21%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 1  MDEGENGDDRLDCLSDSTIKNRIRMRK----------TMAKVWEWWMAEGDDGDDWIERD 53
          M EGENG+DRL        +N IR+R             AKV EWW A GD+G DWIERD
Sbjct: 1  MVEGENGNDRL-----VEGENCIRLRSEGCEWWVADGATAKVCEWWRAAGDNGGDWIERD 58

The following BLAST results are available for this feature:
BLAST of IVF0009854 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0009854 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TGP51.6e-1470.97Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold943G... [more]
A0A5D3CLW14.3e-0775.00Sulfiredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00580 P... [more]
BLAST of IVF0009854 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042403.18.85e-1870.97gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0043173.11.44e-0975.00sulfiredoxin [Cucumis melo var. makuwa] >TYK12292.1 sulfiredoxin [Cucumis melo v... [more]
KAA0041521.13.00e-0558.54flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK24394.1 flocculat... [more]
KAA0048296.14.64e-0549.21putative mitochondrial protein [Cucumis melo var. makuwa] >TYK10641.1 putative m... [more]
BLAST of IVF0009854 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009854.1IVF0009854.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098869 cellular oxidant detoxification
molecular_function GO:0005524 ATP binding
molecular_function GO:0032542 sulfiredoxin activity