IVF0009750 (gene) Melon (IVF77) v1

Overview


Name	IVF0009750
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Polyadenylate-binding protein 2-like
Location	chr10: 23217953 .. 23223014 (-)
RNA-Seq Expression	IVF0009750
Synteny	IVF0009750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCTTCTAGAGCATACTGTTTGGATTTACAAAAAGTTAAAAAAGAACAAAACTCACTACTTCAGTTGAAAGTTGTATTCTATCTGTTATGCTCTTTTCTTTATTATTTCATAGAATCAAGTGAACTATGTCGTTCACCATTTTCATGTCTATATATGTGGACTTTAAGAGTTAGGTATATATATATATATGGAGTGATTTTTGTATTTTGTTGAACAACAAATATTAGAGGCATTGCTTAAAGCAGGCTATTCTTTGGTTAAGCAGCATTTGATCATTGAGACTAAACTTTTAAAAAAATACATGAAGAACATGGACGACTAGCTAGGAAACTGAGATAATGAGACTTTTAAATTTATTTATGACAATTGTTAATATCAGATTTTTCATTGTTTTCCAAAACGCCATTTCTTGTATTTTTATTATTCACAGTCCCCCTTACGTATTCTGTCATTTTTCTTTCCTTTTTCTTTTTTAGCATGTAGAATTTATTAATATGTTAGGAGTAAAAACAATAATATGTTAGTAGTGAGAATCATCTAGAAATATATTAATGCTACTTTTAGTTCAGCAAGTTACTAAACATTTTACATGGAAATGGATTGATATCATTGATTTGCATTCTTTTAGTTTGAATCCTTACCATTTGTTTATAAGTACAAAAACTATTATGAACTTATGATTTATGGTGATCTATATTGCTTTTAGAGGTTTCTTACAACTATCATTAGAAATTGTATACTAGTGTAGGATTCGATGCTAATTTCTATTTAAAATTAATTAGTTTTGTGAACACTATGTTTAGAGCCACAATTTTTCAAGTTTTACTTACTATGTTTCTTTTTTTTTTTTTTTTTGTCACTGATTGAGTGTGTTACTCATGTTATTAATCTTTAAAGCTTTATGTTTTTCATCAGTTAGATGGTGAAGTTACTCATGTTATTAATCTTTAAAGCTTTATGTTTTTCATCAGTTAGATGGTGAAGTTTTTTATTTCACATTTGTCTCTTTTTTTAGTTTTATTTACTTTGTAGGGTTTGAAATTTTGGGGGGTTTTTGCTGAAGGGGTTGTTTTAGCTAACTGGATTTTGTATTTAACTCTCACTACAACAAATCTGGCTTTTAATGTCGGGTGGAAAAAATGAAAAATGGGCTTTAATGTCGGTTTTCAAAAGGCGGACGTTTAATGTCGGTTTTAAACCGACATTAAAGAATGAGCTTTAATATCGGTTTAAAACCGACATTAAAGCCCCTTTATAATTTTTTTTATTTTTTTAATTTGGTAAAAAATCAAGTTTCCCCTCTCTTACTTTACCTTTTCTTTTTCCTTAAAAGTTTCTATATAAATTCTCCTCCTCTCTTCTTCCTCTTATAACTTTGAAATCTTCTAACCCTAAATTCTGCAGCCACAAATCAAATTTTCTTGCTTTCATTTCCTACCATCGTAGATTCTTTTTTCCTTCGACGATTTGAAGATTTACTATGGCCGGTAAATGAGAAGGTCCGGCGACCGCCGTGCCGTTCCGCCTTCAAACGCCGCAGGTCGTCGGCGTCTCTCTCTCTCTCTCGGCCTTCTGTAGGAAACTTCACCAGCAACTGTCGTCGAATTCCAGTTTGCGTCCAGCACCGATTCCAATCAATAGGGTGCGGTTGTTGGGTCTAGCTGTCGACGGATCTCGCCCGGCTGTGCCGCATTTCGTCAGGATTTGATCAATGAAAGCCATTACTCGAGCAAATCAGTGCAAGGTCGAGAGTGTAACAGAGACCAATTCCCCGAAGCGGAAATTGAGATCCAGTAGTGTGCAGAGGTAACAAAGCCCTGTCTCTACGCCGGTGAATTGGAAATCTCCTCGTCGGTGCCTTAATTCGAGTCCAAAAAGCCCTCCAGAGGTAAGTTTGTTAAGATCATTTCAGAACAGTTTGCAGTTTCTCACTGTCTTTAGCTTACGGCTATCCTTTGAGCGGATATGATGACGACTAAAATTAAACGGAAGAATTTGAAGTTTCTTAGTTTAGTTAGGTATTACAAATTAAATTAAGAGTTTCTGCAAATGCATCCTTTCTTAGCCTCGTATATGATCAAATGATGAGTGCGTTTGAGATATCATTTCTTCTAATTATATGCAGAGCAATGGGAAAGCGGTTAATGGTGGCTTTTCTAACTCACTTACTTCACCGATAAGATGCTTGTTGAAGGACCTTATTGTCAAACCAGATTGGAATCCTAAAGGTGAGAATTAGTTTGTATGTTTCTAATTATATGTTTCTACTGCATTTCTAACAGGTTTTCGTTTACTGTTCATAGACCCATAGTTTGCACTCGTATAGGACCGTTATTGGTAGGTATATCCTGCTAGGATGGTTGCAAGGCGGTCTGACAGACTTCAAAATGTCTTTTTTGTTGCTAGTGGAATTTAGATTTCACCTTGTGCTATGTGAAAAGATGAGGAAGATGCATTCTTGAGTTATTAGTTTATGCTCATAAGATGTTTGATGAAATGTCTCGTAAAAGTCTCTTTTTCTTATGCCTTGAGTGAGCGTTTTGTTTGGTTTTTTAGTATTATTTTTGTGAATGTAGGTTGTTCGAAAGATGCATCGGGCTTTTGTTTGGTTTTGTTTGGTTTTTTAGTATTATTCTTATGCATTAGGCTCTAGCAATCAAGTTCTGCCATATATAATTGGCATTGTGTTTTACTATTATACATTTCATTTGGCAATTCATCCTAGTATCACTTTGTTTTCAATCATCAATGGTAGGGAAAGTGTTTCTTGTTTATGAAAAATGGAACCAAGTACATTTGAGGAGACTTCTAGAATTACCGTAGCTCTTCGGAATTTCCTCATTTGTTTTTTGTTCCTTCAATAAAGTGGTATCTCTTATAATATGTATATATACATAAATTTATGTGAACGTCATTGTGTGACCTCTAGGCTTGAAATTTTCTTTTTGAGAGGTAATTTTCATGTGAGTAGACTCATATCTCTATAAAACGTTATGAAGCCTAAGAATTGTCAGTGCTAGGATGTGTACTATTCATGAGATCTTGAATTTTTTAAGCTGTGGACAAATTATATTCACAAGTCTTGTTGTAATATGGTGCTGTTCATAGATGGGTATAAGCTCAAGAATTTTTTTTGATTATGTTATGCTAATTAAGTCACCAAAATGGATTTTGTAAGTTGAAGCTTTATGGTGATTGTATTCTGTTTCGATTTGTAAGTTTAAGCTCAGGACATTTATTCATTCTTTGTTATATTAATCATCTTGGCAATTTTCTACCCATTAGTTTTGACGTGGGAGTGAGTTTGAGTGTTATTTGACATTTGTTGGATGTAAGAGCTGACATATTTAGTAATTTTGTAAACTGTTTGGTTTATAACGCCCCGTCTGGTTCAAGGTTCCTTATAGTGATCCGTACCTTCTTTGCATCTGTATTTTTAATCTGTATACATGGGTTAATTCTATAATATCGAGGAAACTCTTCCATGATTATGATGCCTTGCCTTTGGGTAGTTGAAGAAAATTTCCCTGGTAAGTTAGGCAACAGAGATACTTCAATCCATGTTAGCTATTTTCCCCGCACTTTGATGTTGGTTTTACATATACAACGAATGCAAGAATCTATTTCAATATTGCACAAAAAGGTGAATAACTTAGTTTTAGAGTAATTAATGTTTTGGCTTCATTAATTATTCATAGAGGACTATAATTTTTTATTTTCCATGGTGTAAAATTTGGTTCATAAAATGATTGTTTCACAATTTATTTTTCCCCTTCCTTTTAATTTTATTTTGCGAGGCTTTACCTTCTTAGTTCCTTGTACTTTAAGAGTATCTGGCTTCTGTCTGTGCTTCAAATGAGTAGCCTATCTATGCGCAGAAGAGATATTGAGTATTCATTTATGGCACTTAGCAGCAGTCCTTCATGTGGTTTAGGACGTATGGCAGTTACCAATGAGTGATTTCCTCGACTTTAGTGTCAATTAATCACAACTTGAGGTGGTGGAGAGTTTTCAGTAGTAGTTAGGATATTTTTATGATATATGGAGATGGGAGATGAGAATTGCTCATAAAGTTTATCATATCCGAAAGAGATATGCTTGGTGCAAATGAACTATGTATTTCTAGAAGTGGACACTGGACAGTGCTTGAGGGGAAGTGCTAATTACTAGACATACACTAAAATTAACTTTCATAAATCATAATAGCACTACACATTTATGGATGACAGACAAGTGACAGGCAGATGTTAAAATGTTGATTGCTTAAGTTTTTGTCTTAGTTGCCTTCTTTTCAAGTGGCCAAATAATAGAGTTGGGATTGGCATGAGTCATGATGCATACGGAAATATATTTTTTTAAAAAAATGTTTGACATGACCATCGATTACTGATGTTGGAGTAAATATCCTACACCGATTCCGTAACTTTTCTGTTGCTCTAGGAGCAGTTCACAAAGATTGGTTCATCTTCTTTTCTAGTTTTTAACTTTTAAGATAAAGGATCACATAGTCCATCAGGTTAAAGGACAATCAATCAACGTGTTTGAGCTGTTTATAGTTTTGAGTGCAATAAAATATTCATACTTTTTAAGTTGGTCCTCTTTGGTATTATACTACTATCGTTTCCATGCTTTGCTTATGATTTAGTTTGTGTTTGATTAAATAACATTTAAGATGGAATTGGACTTGCAGGTTGATTGTGCGTGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTAGCTCCTTGGGGAAAGATGATTTACGTTTCTATTCTATCAAGTATTGGACATTGGCATACTAATTCTACATTTTATTATTGGCGCCGTTATCTGTGCATGTTGTTTGAGTTCTTATAACTAATGTTAAATGGTTTTAATATCATTCTGTTCATCTCAGGTTCAACAAAAGTGA

mRNA sequence

ATGTATCTTCTAGAGCATACTGTTTGGATTTACAAAAATGTAACAGAGACCAATTCCCCGAAGCGGAAATTGAGATCCAGTAGTGTTGATTGTGCGTGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGTGA

Coding sequence (CDS)

ATGTATCTTCTAGAGCATACTGTTTGGATTTACAAAAATGTAACAGAGACCAATTCCCCGAAGCGGAAATTGAGATCCAGTAGTGTTGATTGTGCGTGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGTGA

Protein sequence

MYLLEHTVWIYKNVTETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVQQK

Homology

[Close]

BLAST of IVF0009750 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.9e-28
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 22  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLL 81
           R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+L
Sbjct: 103 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLIL 162

Query: 82  NETELHGRQLKVQQK 97
           NE+ELHGRQ+KV  K
Sbjct: 163 NESELHGRQIKVSAK 177

[Close]

BLAST of IVF0009750 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.9e-28
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 22  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLL 81
           R +   +VD ACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVE EAVQEAL L
Sbjct: 92  RSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQL 151

Query: 82  NETELHGRQLKVQQK 97
           NE+ELHGRQLKV QK
Sbjct: 152 NESELHGRQLKVLQK 166

[Close]

BLAST of IVF0009750 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-26
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 22  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLL 81
           R +   +VD ACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL L
Sbjct: 89  RSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQL 148

Query: 82  NETELHGRQLKVQQK 97
           NE+ELHGRQLKV  K
Sbjct: 149 NESELHGRQLKVSPK 163

[Close]

BLAST of IVF0009750 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-17
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 28  SVDCACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETEL 87
           +VD + TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V  ALLLN + L
Sbjct: 61  NVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSML 120

Query: 88  HGRQLKVQQK 97
           H R LKV  K
Sbjct: 121 HERPLKVTPK 130

[Close]

BLAST of IVF0009750 vs. ExPASy Swiss-Prot
Match: Q9DDY9 (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.0e-16
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 22  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALL 81
           R +   +VD   T EE++ HF  CG+VNRVTIL DKF GHPKGFAY+EF + E+V+ +L 
Sbjct: 163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLA 222

Query: 82  LNETELHGRQLKVQQK 97
           L+E+   GRQ+KV  K
Sbjct: 223 LDESLFRGRQIKVVPK 238

[Close]

BLAST of IVF0009750 vs. ExPASy TrEMBL
Match: A0A5A7T2C2 (Polyadenylate-binding protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002980 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 15  TETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA 74
           ++  +  R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA
Sbjct: 76  SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA 135

Query: 75  VQEALLLNETELHGRQLKVQQK 97
           VQEALLLNETELHGRQLKVQQK
Sbjct: 136 VQEALLLNETELHGRQLKVQQK 157

[Close]

BLAST of IVF0009750 vs. ExPASy TrEMBL
Match: A0A0A0KG83 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499790 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 15  TETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA 74
           ++  +  R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA
Sbjct: 76  SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA 135

Query: 75  VQEALLLNETELHGRQLKVQQK 97
           +QEALLLNETELHGRQLKVQQK
Sbjct: 136 IQEALLLNETELHGRQLKVQQK 157

[Close]

BLAST of IVF0009750 vs. ExPASy TrEMBL
Match: A0A6J1BTY4 (polyadenylate-binding protein 3-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005528 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 12  KNVTETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVE 71
           +N  ET+S  R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEF+E
Sbjct: 75  ENKEETDS--RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFLE 134

Query: 72  AEAVQEALLLNETELHGRQLKVQQK 97
           AEAVQEALLLNE+ELHGRQLKVQQK
Sbjct: 135 AEAVQEALLLNESELHGRQLKVQQK 157

[Close]

BLAST of IVF0009750 vs. ExPASy TrEMBL
Match: A0A5D3DGW2 (Polyadenylate-binding protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00370 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.2e-29
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 29 VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 88
          VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 7  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66

Query: 89 RQLKVQQK 97
          RQLKVQQK
Sbjct: 67 RQLKVQQK 74

[Close]

BLAST of IVF0009750 vs. ExPASy TrEMBL
Match: A0A5A7V432 (Polyadenylate-binding protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G003430 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.2e-29
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 29  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 88
           VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 84  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 143

Query: 89  RQLKVQQK 97
           RQLKVQQK
Sbjct: 144 RQLKVQQK 151

[Close]

BLAST of IVF0009750 vs. NCBI nr
Match: TYK22852.1 (polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (343), Expect = 1.32e-39
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 29 VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 88
          VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 7  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66

Query: 89 RQLKVQQK 96
          RQLKVQQK
Sbjct: 67 RQLKVQQK 74

[Close]

BLAST of IVF0009750 vs. NCBI nr
Match: XP_011657966.1 (polyadenylate-binding protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 136 bits (342), Expect = 5.40e-39
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 29 VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 88
          VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA+QEALLLNETELHG
Sbjct: 3  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETELHG 62

Query: 89 RQLKVQQK 96
          RQLKVQQK
Sbjct: 63 RQLKVQQK 70

[Close]

BLAST of IVF0009750 vs. NCBI nr
Match: KAA0060499.1 (polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (343), Expect = 1.34e-38
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 29  VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 88
           VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 84  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 143

Query: 89  RQLKVQQK 96
           RQLKVQQK
Sbjct: 144 RQLKVQQK 151

[Close]

BLAST of IVF0009750 vs. NCBI nr
Match: XP_038882560.1 (polyadenylate-binding protein 3-like isoform X3 [Benincasa hispida])

HSP 1 Score: 135 bits (339), Expect = 1.55e-38
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 29 VDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 88
          VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNE+ELHG
Sbjct: 3  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHG 62

Query: 89 RQLKVQQK 96
          RQLKVQQK
Sbjct: 63 RQLKVQQK 70

[Close]

BLAST of IVF0009750 vs. NCBI nr
Match: KAA0036316.1 (polyadenylate-binding protein 2-like [Cucumis melo var. makuwa] >TYK12710.1 polyadenylate-binding protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 1.71e-38
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 15  TETNSPKRKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA 74
           ++  +  R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA
Sbjct: 76  SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA 135

Query: 75  VQEALLLNETELHGRQLKVQQK 96
           VQEALLLNETELHGRQLKVQQK
Sbjct: 136 VQEALLLNETELHGRQLKVQQK 157

[Close]

BLAST of IVF0009750 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-29
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 22  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLL 81
           R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+L
Sbjct: 103 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLIL 162

Query: 82  NETELHGRQLKVQQK 97
           NE+ELHGRQ+KV  K
Sbjct: 163 NESELHGRQIKVSAK 177

[Close]

BLAST of IVF0009750 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-29
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 22  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLL 81
           R +   +VD ACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVE EAVQEAL L
Sbjct: 92  RSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQL 151

Query: 82  NETELHGRQLKVQQK 97
           NE+ELHGRQLKV QK
Sbjct: 152 NESELHGRQLKVLQK 166

[Close]

BLAST of IVF0009750 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-29
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 22  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLL 81
           R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+L
Sbjct: 141 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLIL 200

Query: 82  NETELHGRQLKVQQK 97
           NE+ELHGRQ+KV  K
Sbjct: 201 NESELHGRQIKVSAK 215

[Close]

BLAST of IVF0009750 vs. TAIR 10
Match: AT5G51120.3 (polyadenylate-binding protein 1 )

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-29
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 22 RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLL 81
          R +   +VD ACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+L
Sbjct: 18 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLIL 77

Query: 82 NETELHGRQLKVQQK 97
          NE+ELHGRQ+KV  K
Sbjct: 78 NESELHGRQIKVSAK 92

[Close]

BLAST of IVF0009750 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 120.2 bits (300), Expect = 9.3e-28
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 22  RKLRSSSVDCACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLL 81
           R +   +VD ACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL L
Sbjct: 89  RSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQL 148

Query: 82  NETELHGRQLKVQQK 97
           NE+ELHGRQLKV  K
Sbjct: 149 NESELHGRQLKVSPK 163

The following BLAST results are available for this feature:

BLAST of IVF0009750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VI4	6.9e-28	78.67	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
Q9FJN9	6.9e-28	81.33	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	1.3e-26	78.67	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
O14327	1.9e-17	65.71	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q9DDY9	8.0e-16	53.95	Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=...	[more]

BLAST of IVF0009750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T2C2	1.3e-29	82.93	Polyadenylate-binding protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KG83	1.7e-29	81.71	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499790 PE=4 SV...	[more]
A0A6J1BTY4	1.7e-29	82.35	polyadenylate-binding protein 3-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5D3DGW2	2.2e-29	98.53	Polyadenylate-binding protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7V432	2.2e-29	98.53	Polyadenylate-binding protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of IVF0009750 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22852.1	1.32e-39	98.53	polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa]	[more]
XP_011657966.1	5.40e-39	97.06	polyadenylate-binding protein 3 isoform X2 [Cucumis sativus]	[more]
KAA0060499.1	1.34e-38	98.53	polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa]	[more]
XP_038882560.1	1.55e-38	97.06	polyadenylate-binding protein 3-like isoform X3 [Benincasa hispida]	[more]
KAA0036316.1	1.71e-38	82.93	polyadenylate-binding protein 2-like [Cucumis melo var. makuwa] >TYK12710.1 poly...	[more]

BLAST of IVF0009750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51120.1	4.9e-29	78.67	polyadenylate-binding protein 1	[more]
AT5G65260.1	4.9e-29	81.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	4.9e-29	78.67	polyadenylate-binding protein 1	[more]
AT5G51120.3	4.9e-29	78.67	polyadenylate-binding protein 1	[more]
AT5G10350.2	9.3e-28	78.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 23..94 e-value: 9.5E-13 score: 58.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 33..92 e-value: 2.9E-13 score: 49.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 22..96 score: 14.095321
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 16..96 e-value: 8.0E-22 score: 79.2
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 22..96
None	No IPR available	PANTHER	PTHR23236:SF75	POLYADENYLATE-BINDING PROTEIN 1-LIKE	coord: 22..96
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 28..93 e-value: 1.58834E-41 score: 128.948
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 20..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009750.1	IVF0009750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding