IVF0009739 (gene) Melon (IVF77) v1

Overview
NameIVF0009739
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Locationchr11: 11509962 .. 11510165 (-)
RNA-Seq ExpressionIVF0009739
SyntenyIVF0009739
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCATGTGTCGCAGCTTAAGAATATGCTGGGGGAACATATTGAAGTGCACCAATTGATTCCATATCTTACTGAAACTCATAAGTGGAAGGCTATTCTAGGAGAGGTATTTGTGGGTATAGAAAGAATGCTTCAACGGATGGGAGGCGTTGATCAGTTGGAAGGGTTTACCAGCACACGAAGCTATATGGGAAGTGCGTGA

mRNA sequence

ATGTTTCATGTGTCGCAGCTTAAGAATATGCTGGGGGAACATATTGAAGTGCACCAATTGATTCCATATCTTACTGAAACTCATAAGTGGAAGGCTATTCTAGGAGAGGTATTTGTGGGTATAGAAAGAATGCTTCAACGGATGGGAGGCGTTGATCAGTTGGAAGGGTTTACCAGCACACGAAGCTATATGGGAAGTGCGTGA

Coding sequence (CDS)

ATGTTTCATGTGTCGCAGCTTAAGAATATGCTGGGGGAACATATTGAAGTGCACCAATTGATTCCATATCTTACTGAAACTCATAAGTGGAAGGCTATTCTAGGAGAGGTATTTGTGGGTATAGAAAGAATGCTTCAACGGATGGGAGGCGTTGATCAGTTGGAAGGGTTTACCAGCACACGAAGCTATATGGGAAGTGCGTGA

Protein sequence

MFHVSQLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYMGSA
Homology
[Close]
BLAST of IVF0009739 vs. ExPASy TrEMBL
Match: A0A5A7UDE4 (Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00150 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.5e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 6   QLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYMG 65
           QLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYMG
Sbjct: 476 QLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYMG 535

Query: 66  SA 68
           SA
Sbjct: 536 SA 537

[Close]
BLAST of IVF0009739 vs. ExPASy TrEMBL
Match: A0A5D3BEX7 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00100 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 6   QLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYMG 65
           +LKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYMG
Sbjct: 236 KLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYMG 295

Query: 66  SA 68
           SA
Sbjct: 296 SA 297

[Close]
BLAST of IVF0009739 vs. ExPASy TrEMBL
Match: A0A5D3BWI8 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00130 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 1   MFHVSQLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQR--MGGVDQLEGFT 60
           +FHVSQLK MLGEH +VHQL+PY+ ETH+W+AI  EVF G ++      +G  DQLEG  
Sbjct: 131 VFHVSQLKKMLGEHTKVHQLVPYVYETHEWRAIPEEVF-GYQKNCSTGIVGSADQLEGIA 190

[Close]
BLAST of IVF0009739 vs. ExPASy TrEMBL
Match: A0A5D3C0Q8 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00230 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MFHVSQLKNMLGEHIEVHQLIPYLTETHKWKAILGEVF 39
           MFHVSQLK MLGEH EVHQLIPYLTET +WKAI  EVF
Sbjct: 449 MFHVSQLKKMLGEHTEVHQLIPYLTETQEWKAIPEEVF 486

[Close]
BLAST of IVF0009739 vs. ExPASy TrEMBL
Match: A0A5A7V6Y3 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005780 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MFHVSQLKNMLGEHIEVHQLIPYLTETHKWKAILGEVF 39
           MFHVSQLK MLGEH EVH+LIPYLTET +WKAI  EVF
Sbjct: 449 MFHVSQLKKMLGEHTEVHKLIPYLTETQEWKAIPEEVF 486

[Close]
BLAST of IVF0009739 vs. NCBI nr
Match: TYJ97626.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (321), Expect = 2.92e-33
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 5   SQLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYM 64
            +LKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYM
Sbjct: 235 DKLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYM 294

Query: 65  GSA 67
           GSA
Sbjct: 295 GSA 297

[Close]
BLAST of IVF0009739 vs. NCBI nr
Match: KAA0053230.1 (pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (324), Expect = 4.82e-33
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 6   QLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYMG 65
           QLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYMG
Sbjct: 476 QLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQRMGGVDQLEGFTSTRSYMG 535

Query: 66  SA 67
           SA
Sbjct: 536 SA 537

[Close]
BLAST of IVF0009739 vs. NCBI nr
Match: TYK02489.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.73e-12
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 2   FHVSQLKNMLGEHIEVHQLIPYLTETHKWKAILGEVFVGIERMLQR--MGGVDQLEGFTS 59
           FHVSQLK MLGEH +VHQL+PY+ ETH+W+AI  EVF G ++      +G  DQLEG  +
Sbjct: 132 FHVSQLKKMLGEHTKVHQLVPYVYETHEWRAIPEEVF-GYQKNCSTGIVGSADQLEGIAT 190

[Close]
BLAST of IVF0009739 vs. NCBI nr
Match: TYK04844.1 (transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.02e-11
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MFHVSQLKNMLGEHIEVHQLIPYLTETHKWKAILGEVF 38
           MFHVSQLK MLGEH EVHQLIPYLTET +WKAI  EVF
Sbjct: 449 MFHVSQLKKMLGEHTEVHQLIPYLTETQEWKAIPEEVF 486

[Close]
BLAST of IVF0009739 vs. NCBI nr
Match: KAA0062186.1 (transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.57e-11
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MFHVSQLKNMLGEHIEVHQLIPYLTETHKWKAILGEVF 38
           MFHVSQLK MLGEH EVH+LIPYLTET +WKAI  EVF
Sbjct: 449 MFHVSQLKKMLGEHTEVHKLIPYLTETQEWKAIPEEVF 486

The following BLAST results are available for this feature:
BLAST of IVF0009739 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0009739 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UDE49.5e-27100.00Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5D3BEX72.8e-2698.39Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va... [more]
A0A5D3BWI81.2e-0855.74Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3C0Q81.2e-0884.21Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7V6Y33.4e-0881.58Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of IVF0009739 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ97626.12.92e-3396.83Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var.... [more]
KAA0053230.14.82e-33100.00pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa][more]
TYK02489.11.73e-1256.67transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
TYK04844.11.02e-1184.21transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0062186.13.57e-1181.58transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
BLAST of IVF0009739 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009739.1IVF0009739.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0006665 sphingolipid metabolic process
molecular_function GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
molecular_function GO:0003676 nucleic acid binding