IVF0009730 (gene) Melon (IVF77) v1

Overview
NameIVF0009730
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Locationchr12: 4441312 .. 4442806 (+)
RNA-Seq ExpressionIVF0009730
SyntenyIVF0009730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTTTCAACGAGTGGTGAATGCTTGTCCGGTGTTAGAAACAACTAAAAATGCATTTCAATAAAGAAAGTTAGTGAAGCTTAAGAACTTCAGGTGTTCGTCCCAAGCAGATGCGAAAGAGAATGCCTCGAACTCAGTTTTTTGAAATCTCGAAAACTTCTTCCGAACTCGAACCGGACCAAACTAGAGTTGACTCGCTATTCTCTAGACTTGGAATCGGGTTGTGGGACCTGTTCAAAGTAGGAAATTTGAGAAAGAGATTGAATTTGTTGGTAGATTTTGGTGTGAGATTTGGGAAAGAAAAAGGTTTATTTTTTGAATTCAAAATTACAAAAAATGGCAAAATTCTTCTTTAAAATGAAAATTGCCCCTTAAATAGACTAATTACATGCAAAATTTACATGTAATTGGATCAACAAGGCCTAACACTTCACAATCCACTAATCATTAGTGGATTGATTCACCATTCCATTTTCTCTTAGTGAACTTGGTGTCATCACCATGAGCTTCCATATAGTCCATTAAGAGTTAGTGAGATTATCCACCAAAATGTTGGATTTTTCCACTAACTTTGGTCAAAGGGTAAAATGGTCATTTGACCATTCTAGTTAAAGTCAAAAGTCAAATTTTGATTTTTTTACCATTTTGTCTTTCTTGACTAATTTCGACCACTCGAGTATGAATCTGCATTCATTTTTTTGAAATTTAAATCACATTTGAATATAAAGTCGGTCAAAGTTTGACTTTTCAAAGTCAAAAGTCAAAAGTCAACATTTTGACTTTTCACAACTTTGAAATTGTATTTCAGCAAAAGAAACAGGCTAAGCTCAAGAAGTTCTGGTGTTCGTCCCAAGAAAATGCGAACGAGAATGCCCTGGAATTAGTTTTTCTATCTCGGGGTAAAACGCGGTTCTTCAACGGTTTCTTTATTTTGTATCGGTTATAAGTGTTCAATGCTTCGGTACTCATACTTCAAGGACATCATTCTACATTCCTGGCATCTTCCTTCACACATTTTCATAAAGTATAGCTCAAGAAGCAAGCTCATTGGAGAGAGAACTAAGGTGCAACCTAGAACGAACAAAAATATGGCCAATGCTCCTCCAACGAGTGTCGAATGCTCGTTCGATGTCAGAAACCACTAAAAATGAATTTCAGCGAAGCAAACGAGCTAAGCTCAAGAAATTTTGGTGTTCGTCCAAAGAAACTGCAAACAAGAATGCTCCAGAAAATTTTTCAATCTTAGGATAAAAAGCGGTTCTTCAACGGTTTCTTTGTTTTGCATTGGTCATAAGTGTTTTGAGCTTCGAGTCTCATACTTCGAGGACTTTAGTCTACATTTCTGGCATCATCCCTCATACATTTTCCCAAAGTATAGCTCGAGAAGTGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCAAAACAATAAAAAAGATGGCCAATGCTCTTCCAACGAGTGGCGAACGCTCGTCGAGTTTTAGAAACCACTGA

mRNA sequence

ATGCTCTTTCAACGAGTGGTGAATGCTTGTCCGGTGTTAGAAACAACTAAAAATTCAAAAGTCAACATTTTGACTTTTCACAACTTTGAAATTGTATTTCAGCAAAAGAAACAGGCTAAGCTCAAGAAGTTCTGGTGTTCGTCCCAAGAAAATGCGAACGAGAATGCCCTGGAATTAGTTTTTCTATCTCGGGGTAAAACGCGGTTCTTCAACGGTTTCTTTATTTTGATAAAAAGCGGTTCTTCAACGGTTTCTTTGTTTTGCATTGGTCATAAGTGTTTTGAGCTTCGAGTCTCATACTTCGAGGACTTTAGTCTACATTTCTGGCATCATCCCTCATACATTTTCCCAAAGTATAGCTCGAGAAGTGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCAAAACAATAAAAAAGATGGCCAATGCTCTTCCAACGAGTGGCGAACGCTCGTCGAGTTTTAGAAACCACTGA

Coding sequence (CDS)

ATGCTCTTTCAACGAGTGGTGAATGCTTGTCCGGTGTTAGAAACAACTAAAAATTCAAAAGTCAACATTTTGACTTTTCACAACTTTGAAATTGTATTTCAGCAAAAGAAACAGGCTAAGCTCAAGAAGTTCTGGTGTTCGTCCCAAGAAAATGCGAACGAGAATGCCCTGGAATTAGTTTTTCTATCTCGGGGTAAAACGCGGTTCTTCAACGGTTTCTTTATTTTGATAAAAAGCGGTTCTTCAACGGTTTCTTTGTTTTGCATTGGTCATAAGTGTTTTGAGCTTCGAGTCTCATACTTCGAGGACTTTAGTCTACATTTCTGGCATCATCCCTCATACATTTTCCCAAAGTATAGCTCGAGAAGTGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCAAAACAATAAAAAAGATGGCCAATGCTCTTCCAACGAGTGGCGAACGCTCGTCGAGTTTTAGAAACCACTGA

Protein sequence

MLFQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSSFRNH
Homology
BLAST of IVF0009730 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-28
Identity = 82/153 (53.59%), Postives = 97/153 (63.40%), Query Frame = 0

Query: 1    MLFQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELV 60
            +LFQRV NA PV    K++             FQQ K AKLK FWCSSQE+A+ENA + V
Sbjct: 1222 ILFQRVANARPVSGMIKHA-------------FQQWKCAKLKNFWCSSQESASENAPDSV 1281

Query: 61   FLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYIFPKYS 120
            FLS  K R  +GF +L           C+GHK FEL+ SY EDFSLH W  PS +F KY 
Sbjct: 1282 FLSPDKKRSCDGFLVLC----------CVGHKHFELQDSYSEDFSLHSWQCPSPVFQKYR 1341

Query: 121  SRSELVGGRTKVQPKTIKKMANALPTSGERSSS 154
            + S+LV GRTKVQ  TI+KMAN LPTSG+R SS
Sbjct: 1342 TGSKLVRGRTKVQLVTIEKMANTLPTSGKRLSS 1351

BLAST of IVF0009730 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.7e-13
Identity = 54/128 (42.19%), Postives = 69/128 (53.91%), Query Frame = 0

Query: 30  EIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCI 89
           E+  Q++KQ +LK FWCSSQENA++NA +  F S GK R   GFF L++          I
Sbjct: 19  EMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPYGFFHLLR----------I 78

Query: 90  GHKCFELRVSYFEDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGE 149
           GHK F+L+ SY+EDF+ H WH               + G      K  K+    LPTSGE
Sbjct: 79  GHKSFDLQGSYYEDFNRHSWH-------------SXLEGELWCDQKGSKRWP-ILPTSGE 122

Query: 150 RSSSFRNH 158
            SS  RNH
Sbjct: 139 CSSGIRNH 122

BLAST of IVF0009730 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.1e-12
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 102 EDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS 154
           +DFSLH WHH S IFP+Y S SELVG RTKVQ  TI+K+ANALPTSGERSSS
Sbjct: 20  KDFSLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIANALPTSGERSSS 71

BLAST of IVF0009730 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-11
Identity = 51/110 (46.36%), Postives = 61/110 (55.45%), Query Frame = 0

Query: 3    FQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFL 62
            FQRV NA PV ETT N+                KK+A+LK FWCSSQENA EN L+ VF 
Sbjct: 1792 FQRVGNARPVSETTGNA-------------LAVKKRAELKDFWCSSQENAFENVLDSVFS 1851

Query: 63   SRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHP 113
            S GK +  +GFF L +          IGHK  + R SY EDF+ + WH P
Sbjct: 1852 SWGKKQSPDGFFPLRR----------IGHKSIDPRGSYSEDFNPYSWHAP 1878

BLAST of IVF0009730 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 36  KKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFE 95
           +K+AK K FWC SQE+A++N+ + V  SRGK RF+NGFF+L +          +G+KCFE
Sbjct: 185 RKRAKFKDFWCWSQESASKNSSDSVLPSRGKKRFWNGFFVLCR----------VGYKCFE 244

Query: 96  LRVSYFEDFSLHFWHHPSYI 116
           L  S  EDF LH  HH S++
Sbjct: 245 LCDSSSEDFILHSLHHHSFL 254

BLAST of IVF0009730 vs. NCBI nr
Match: KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (337), Expect = 5.46e-33
Identity = 82/153 (53.59%), Postives = 97/153 (63.40%), Query Frame = 0

Query: 1    MLFQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELV 60
            +LFQRV NA PV    K++             FQQ K AKLK FWCSSQE+A+ENA + V
Sbjct: 1222 ILFQRVANARPVSGMIKHA-------------FQQWKCAKLKNFWCSSQESASENAPDSV 1281

Query: 61   FLSRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYIFPKYS 120
            FLS  K R  +GF +L           C+GHK FEL+ SY EDFSLH W  PS +F KY 
Sbjct: 1282 FLSPDKKRSCDGFLVLC----------CVGHKHFELQDSYSEDFSLHSWQCPSPVFQKYR 1341

Query: 121  SRSELVGGRTKVQPKTIKKMANALPTSGERSSS 153
            + S+LV GRTKVQ  TI+KMAN LPTSG+R SS
Sbjct: 1342 TGSKLVRGRTKVQLVTIEKMANTLPTSGKRLSS 1351

BLAST of IVF0009730 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 2.07e-15
Identity = 54/128 (42.19%), Postives = 69/128 (53.91%), Query Frame = 0

Query: 30  EIVFQQKKQAKLKKFWCSSQENANENALELVFLSRGKTRFFNGFFILIKSGSSTVSLFCI 89
           E+  Q++KQ +LK FWCSSQENA++NA +  F S GK R   GFF L++          I
Sbjct: 19  EMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPYGFFHLLR----------I 78

Query: 90  GHKCFELRVSYFEDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGE 149
           GHK F+L+ SY+EDF+ H WH               + G      K  K+    LPTSGE
Sbjct: 79  GHKSFDLQGSYYEDFNRHSWH-------------SXLEGELWCDQKGSKRWP-ILPTSGE 122

Query: 150 RSSSFRNH 157
            SS  RNH
Sbjct: 139 CSSGIRNH 122

BLAST of IVF0009730 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 8.23e-14
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 102 EDFSLHFWHHPSYIFPKYSSRSELVGGRTKVQPKTIKKMANALPTSGERSSS 153
           +DFSLH WHH S IFP+Y S SELVG RTKVQ  TI+K+ANALPTSGERSSS
Sbjct: 20  KDFSLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIANALPTSGERSSS 71

BLAST of IVF0009730 vs. NCBI nr
Match: KAA0051945.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 2.70e-13
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 78  KSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHPSYIFPKYSSRSELVGGRTK 131
           KSG STV LF IGHKCFEL  SYFE+F+LH WH PS+I+ KY S SEL GGR K
Sbjct: 36  KSGPSTVPLFRIGHKCFELWDSYFENFNLHSWHWPSHIYSKYRSGSEL-GGRKK 88

BLAST of IVF0009730 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 4.30e-13
Identity = 51/110 (46.36%), Postives = 61/110 (55.45%), Query Frame = 0

Query: 3    FQRVVNACPVLETTKNSKVNILTFHNFEIVFQQKKQAKLKKFWCSSQENANENALELVFL 62
            FQRV NA PV ETT N+                KK+A+LK FWCSSQENA EN L+ VF 
Sbjct: 1792 FQRVGNARPVSETTGNA-------------LAVKKRAELKDFWCSSQENAFENVLDSVFS 1851

Query: 63   SRGKTRFFNGFFILIKSGSSTVSLFCIGHKCFELRVSYFEDFSLHFWHHP 112
            S GK +  +GFF L +          IGHK  + R SY EDF+ + WH P
Sbjct: 1852 SWGKKQSPDGFFPLRR----------IGHKSIDPRGSYSEDFNPYSWHAP 1878

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VEB12.4e-2853.59Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo... [more]
A0A5A7UVV03.7e-1342.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BG859.1e-1276.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V5J24.5e-1146.36Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5A7VGQ52.2e-1048.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]

Pages

Match NameE-valueIdentityDescription
KAA0065520.15.46e-3353.59retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo v... [more]
KAA0057641.12.07e-1542.19hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa][more]
TYJ98800.18.23e-1476.92uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
KAA0051945.12.70e-1370.37pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215... [more]
KAA0062888.14.30e-1346.36non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009730.2IVF0009730.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process