IVF0009716 (gene) Melon (IVF77) v1

Overview
NameIVF0009716
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionChloride channel protein
Locationchr01: 8377951 .. 8378194 (+)
RNA-Seq ExpressionIVF0009716
SyntenyIVF0009716
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGTGCATCATCATGATTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTACTTCTGATGTCTAAGGTAAGTTAACAAATAAAATTAAAATTTTAACCGTTCAGCAAGTTTATTTCCACGTGAGAGTGGGTTATGTATATAATCACTTCAGGCTATTGGTGATGCCTTTAATAAAGGCCTGTGTGAAGAGCAAGCCCAATTGAAGAGTATTCCATTACTGGAATGA

mRNA sequence

ATGGGTATGTGCATCATCATGATTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTACTTCTGATGTCTAAGGCTATTGGTGATGCCTTTAATAAAGGCCTGTGTGAAGAGCAAGCCCAATTGAAGAGTATTCCATTACTGGAATGA

Coding sequence (CDS)

ATGGGTATGTGCATCATCATGATTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTACTTCTGATGTCTAAGGCTATTGGTGATGCCTTTAATAAAGGCCTGTGTGAAGAGCAAGCCCAATTGAAGAGTATTCCATTACTGGAATGA

Protein sequence

MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE
Homology
[Close]
BLAST of IVF0009716 vs. ExPASy Swiss-Prot
Match: P92943 (Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 6.9e-14
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+IM+EI+NNLK LPLIMLVLL+SKA+GDAFN+GL E QA+LK IPLLE
Sbjct: 524 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

[Close]
BLAST of IVF0009716 vs. ExPASy Swiss-Prot
Match: Q96282 (Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-07
Identity = 23/52 (44.23%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+I++E++NNL  LPL+MLVLL+SK + D FN+G+ ++   +K +P +E
Sbjct: 536 VSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

[Close]
BLAST of IVF0009716 vs. ExPASy Swiss-Prot
Match: P92941 (Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 5.3e-06
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+I +E++NNL  LP+ M VLL++K +GD+FN  + E    LK +P LE
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 577

[Close]
BLAST of IVF0009716 vs. ExPASy Swiss-Prot
Match: P92942 (Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.3e-06
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+I +E++NNL  LP+ M+VLL++K +GD+FN  + +    LK +P LE
Sbjct: 525 VSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLE 576

[Close]
BLAST of IVF0009716 vs. ExPASy Swiss-Prot
Match: P60300 (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana OX=3702 GN=CLC-G PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-04
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 4   CIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLL 52
           C+I++E++NNL  LP++M+VLL+SK + D FN  +     +LK  P L
Sbjct: 513 CVILLELTNNLLLLPMMMVVLLISKTVADGFNANIYNLIMKLKGFPYL 560

[Close]
BLAST of IVF0009716 vs. ExPASy TrEMBL
Match: A0A5D3DCE9 (Chloride channel protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00500 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+IM+EISNNLKFLPLIMLVLLMSKA+GDAFN+GL EEQAQLK IPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of IVF0009716 vs. ExPASy TrEMBL
Match: A0A0A0KI42 (Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+IM+EISNNLKFLPLIMLVLLMSKA+GDAFN+GL EEQAQLK IPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of IVF0009716 vs. ExPASy TrEMBL
Match: A0A6J1H3N7 (Chloride channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460209 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+IM+EISNNLKFLPLIMLVLLMSKA+GDAFN+GL EEQAQLK IPLLE
Sbjct: 530 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 581

[Close]
BLAST of IVF0009716 vs. ExPASy TrEMBL
Match: A0A6J1H514 (Chloride channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460209 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+IM+EISNNLKFLPLIMLVLLMSKA+GDAFN+GL EEQAQLK IPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of IVF0009716 vs. ExPASy TrEMBL
Match: A0A1S3BMB3 (Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+IM+EISNNLKFLPLIMLVLLMSKA+GDAFN+GL EEQAQLK IPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of IVF0009716 vs. NCBI nr
Match: KGN48017.1 (hypothetical protein Csa_003947 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.11e-17
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 2   GMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 52
            +C+IM+EISNNLKFLPLIMLVLLMSKA+GDAFN+GL EEQAQLK IPLLE
Sbjct: 523 SLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of IVF0009716 vs. NCBI nr
Match: XP_023548210.1 (chloride channel protein CLC-d isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.5 bits (210), Expect = 1.11e-17
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 2   GMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 52
            +C+IM+EISNNLKFLPLIMLVLLMSKA+GDAFN+GL EEQAQLK IPLLE
Sbjct: 523 SLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of IVF0009716 vs. NCBI nr
Match: XP_011657577.1 (chloride channel protein CLC-d [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.11e-17
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 2   GMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 52
            +C+IM+EISNNLKFLPLIMLVLLMSKA+GDAFN+GL EEQAQLK IPLLE
Sbjct: 523 SLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of IVF0009716 vs. NCBI nr
Match: XP_022959118.1 (chloride channel protein CLC-d isoform X2 [Cucurbita moschata] >KAG6574994.1 Chloride channel protein CLC-d, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 1.11e-17
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 2   GMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 52
            +C+IM+EISNNLKFLPLIMLVLLMSKA+GDAFN+GL EEQAQLK IPLLE
Sbjct: 523 SLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of IVF0009716 vs. NCBI nr
Match: XP_008449563.1 (PREDICTED: chloride channel protein CLC-d [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 1.11e-17
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 2   GMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 52
            +C+IM+EISNNLKFLPLIMLVLLMSKA+GDAFN+GL EEQAQLK IPLLE
Sbjct: 523 SLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of IVF0009716 vs. TAIR 10
Match: AT5G26240.1 (chloride channel D )

HSP 1 Score: 77.0 bits (188), Expect = 4.9e-15
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+IM+EI+NNLK LPLIMLVLL+SKA+GDAFN+GL E QA+LK IPLLE
Sbjct: 524 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

[Close]
BLAST of IVF0009716 vs. TAIR 10
Match: AT5G49890.1 (chloride channel C )

HSP 1 Score: 56.2 bits (134), Expect = 8.9e-09
Identity = 23/52 (44.23%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+I++E++NNL  LPL+MLVLL+SK + D FN+G+ ++   +K +P +E
Sbjct: 536 VSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

[Close]
BLAST of IVF0009716 vs. TAIR 10
Match: AT3G27170.1 (chloride channel B )

HSP 1 Score: 50.8 bits (120), Expect = 3.8e-07
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+I +E++NNL  LP+ M+VLL++K +GD+FN  + +    LK +P LE
Sbjct: 525 VSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLE 576

[Close]
BLAST of IVF0009716 vs. TAIR 10
Match: AT5G40890.1 (chloride channel A )

HSP 1 Score: 50.8 bits (120), Expect = 3.8e-07
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+I +E++NNL  LP+ M VLL++K +GD+FN  + E    LK +P LE
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 577

[Close]
BLAST of IVF0009716 vs. TAIR 10
Match: AT5G40890.2 (chloride channel A )

HSP 1 Score: 50.8 bits (120), Expect = 3.8e-07
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 1   MGMCIIMIEISNNLKFLPLIMLVLLMSKAIGDAFNKGLCEEQAQLKSIPLLE 53
           + +C+I +E++NNL  LP+ M VLL++K +GD+FN  + E    LK +P LE
Sbjct: 394 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 445

The following BLAST results are available for this feature:
BLAST of IVF0009716 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P929436.9e-1473.08Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=... [more]
Q962821.3e-0744.23Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=... [more]
P929415.3e-0644.23Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=... [more]
P929425.3e-0642.31Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=... [more]
P603001.3e-0443.75Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana OX=3702 GN=... [more]
BLAST of IVF0009716 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DCE94.2e-1482.69Chloride channel protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A0A0KI424.2e-1482.69Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1[more]
A0A6J1H3N74.2e-1482.69Chloride channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460209 PE=3 SV=1[more]
A0A6J1H5144.2e-1482.69Chloride channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460209 PE=3 SV=1[more]
A0A1S3BMB34.2e-1482.69Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1[more]
BLAST of IVF0009716 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48017.11.11e-1784.31hypothetical protein Csa_003947 [Cucumis sativus][more]
XP_023548210.11.11e-1784.31chloride channel protein CLC-d isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_011657577.11.11e-1784.31chloride channel protein CLC-d [Cucumis sativus][more]
XP_022959118.11.11e-1784.31chloride channel protein CLC-d isoform X2 [Cucurbita moschata] >KAG6574994.1 Chl... [more]
XP_008449563.11.11e-1784.31PREDICTED: chloride channel protein CLC-d [Cucumis melo][more]
BLAST of IVF0009716 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G26240.14.9e-1573.08chloride channel D [more]
AT5G49890.18.9e-0944.23chloride channel C [more]
AT3G27170.13.8e-0742.31chloride channel B [more]
AT5G40890.13.8e-0744.23chloride channel A [more]
AT5G40890.23.8e-0744.23chloride channel A [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3080.10Clc chloride channelcoord: 1..52
e-value: 1.4E-9
score: 39.4
NoneNo IPR availablePANTHERPTHR11689:SF143CHLORIDE CHANNEL PROTEIN CLC-Dcoord: 3..52
NoneNo IPR availablePANTHERPTHR11689CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBERcoord: 3..52
IPR014743Chloride channel, coreSUPERFAMILY81340Clc chloride channelcoord: 2..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009716.2IVF0009716.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902476 chloride transmembrane transport
biological_process GO:0045824 negative regulation of innate immune response
biological_process GO:0009826 unidimensional cell growth
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005802 trans-Golgi network
molecular_function GO:0015108 chloride transmembrane transporter activity
molecular_function GO:0005247 voltage-gated chloride channel activity