IVF0009697 (gene) Melon (IVF77) v1

Overview


Name	IVF0009697
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Location	chr04: 16048892 .. 16049261 (+)
RNA-Seq Expression	IVF0009697
Synteny	IVF0009697

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCTACTCTCGAAGAGGAGATAAAGGAGCATAAAGATGAGAGTGATAGTAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCGAGTGATGATCCCAACGAAAGGGGTTCAAGTGCTTTGGGAGTCCCTGATGTTCCACCATTGCACATTTTTCTTTCTTAATTTTTTTGTTCATCTTCTTCACAAATGACTTATTAATTGTTTACTTTTGCAGTCACCTTTGAACGTTCATCTTGAAGGCTTTATAGAACTAGACAACGATGAATCTTTGACGGGACCTTATGCAGTTGATTTAACCATTGAGGAAGTTGGTACCGCGAAGACTCCCGTCTCTAAACCAGCCGAATAA

mRNA sequence

ATGACTGCTACTCTCGAAGAGGAGATAAAGGAGCATAAAGATGAGAGTGATAGTAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGTCACCTTTGAACGTTCATCTTGAAGGCTTTATAGAACTAGACAACGATGAATCTTTGACGGGACCTTATGCAGTTGATTTAACCATTGAGGAAGTTGGTACCGCGAAGACTCCCGTCTCTAAACCAGCCGAATAA

Coding sequence (CDS)

ATGACTGCTACTCTCGAAGAGGAGATAAAGGAGCATAAAGATGAGAGTGATAGTAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGTCACCTTTGAACGTTCATCTTGAAGGCTTTATAGAACTAGACAACGATGAATCTTTGACGGGACCTTATGCAGTTGATTTAACCATTGAGGAAGTTGGTACCGCGAAGACTCCCGTCTCTAAACCAGCCGAATAA

Protein sequence

MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAKSPLNVHLEGFIELDNDESLTGPYAVDLTIEEVGTAKTPVSKPAE

Homology

[Close]

BLAST of IVF0009697 vs. ExPASy TrEMBL
Match: A0A5D3BZM5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00430 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.4e-26
Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAKSPLNVHLEGFIELDNDESLTGPYAVDL 60
           M ATL+EEI EHKDESDSSKSD HWKR LKKAKSPLN HLEG +ELDNDESL GP+ VD 
Sbjct: 261 MAATLKEEINEHKDESDSSKSDCHWKRSLKKAKSPLNAHLEGLVELDNDESLAGPHVVDS 320

Query: 61  TIEEVGTAKTPVSKPAE 78
           TIE VGT+KTPVSKPAE
Sbjct: 321 TIERVGTSKTPVSKPAE 337

[Close]

BLAST of IVF0009697 vs. ExPASy TrEMBL
Match: A0A5A7TUP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002650 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.0e-25
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAKSPLNVHLEGFIELDNDESLTGPYAVDL 60
           MT TLEEE+KEHKDESDS+KSDRHWKRPLKKAKSPLN HLEG IEL +DESLTGP+ VD 
Sbjct: 137 MTPTLEEEVKEHKDESDSNKSDRHWKRPLKKAKSPLNNHLEGLIELGSDESLTGPHVVDS 196

Query: 61  TIEEVGTAKTPVSKPAE 78
             EEVGT+KTPV+K A+
Sbjct: 197 AFEEVGTSKTPVNKLAK 213

[Close]

BLAST of IVF0009697 vs. ExPASy TrEMBL
Match: A0A5D3BZW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001240 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 66/84 (78.57%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAK------------------SPLNVHLEG 60
          MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAK                  SPLNVHLEG
Sbjct: 1  MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAKVSSDDPNERGSSALGVPDSPLNVHLEG 60

Query: 61 FIELDNDESLTGPYAVDLTIEEVG 67
          FIELDNDESLTGPYAVDLTIEEVG
Sbjct: 61 FIELDNDESLTGPYAVDLTIEEVG 84

[Close]

BLAST of IVF0009697 vs. ExPASy TrEMBL
Match: A0A5D3D2A0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003250 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.1e-24
Identity = 64/92 (69.57%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1   MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAK---------------SPLNVHLEGFIE 60
           M ATLEEEI EHKDE+DSSKSDRHWKRPLKKAK               SPLN HLEG +E
Sbjct: 551 MAATLEEEINEHKDETDSSKSDRHWKRPLKKAKVSSDDPDERGSSALGSPLNAHLEGLVE 610

Query: 61  LDNDESLTGPYAVDLTIEEVGTAKTPVSKPAE 78
           LDNDESLTGP+ VD TIE V T+KTPVSKP E
Sbjct: 611 LDNDESLTGPHVVDSTIEGVDTSKTPVSKPVE 642

[Close]

BLAST of IVF0009697 vs. ExPASy TrEMBL
Match: A0A5D3BCT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00050 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 65/99 (65.66%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 1   MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAK----------------------SPLNV 60
           M ATL+EEIKEHKDESDSSKSDRHWKRPLKKAK                      SPLN 
Sbjct: 46  MAATLKEEIKEHKDESDSSKSDRHWKRPLKKAKVSGDDPDGRGSSAFGVPNVPPLSPLNA 105

Query: 61  HLEGFIELDNDESLTGPYAVDLTIEEVGTAKTPVSKPAE 78
           HLEG +ELD+D+SLTGPYAVD TIE VGT KT VSKP E
Sbjct: 106 HLEGLVELDSDKSLTGPYAVDSTIEGVGTLKTTVSKPIE 144

[Close]

BLAST of IVF0009697 vs. NCBI nr
Match: KAA0044959.1 (hypothetical protein E6C27_scaffold74G002650 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (311), Expect = 2.37e-33
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAKSPLNVHLEGFIELDNDESLTGPYAVDL 60
           MT TLEEE+KEHKDESDS+KSDRHWKRPLKKAKSPLN HLEG IEL +DESLTGP+ VD 
Sbjct: 137 MTPTLEEEVKEHKDESDSNKSDRHWKRPLKKAKSPLNNHLEGLIELGSDESLTGPHVVDS 196

Query: 61  TIEEVGTAKTPVSKPAE 77
             EEVGT+KTPV+K A+
Sbjct: 197 AFEEVGTSKTPVNKLAK 213

[Close]

BLAST of IVF0009697 vs. NCBI nr
Match: KAA0031667.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK04444.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 1.76e-32
Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAKSPLNVHLEGFIELDNDESLTGPYAVDL 60
           M ATL+EEI EHKDESDSSKSD HWKR LKKAKSPLN HLEG +ELDNDESL GP+ VD 
Sbjct: 261 MAATLKEEINEHKDESDSSKSDCHWKRSLKKAKSPLNAHLEGLVELDNDESLAGPHVVDS 320

Query: 61  TIEEVGTAKTPVSKPAE 77
           TIE VGT+KTPVSKPAE
Sbjct: 321 TIERVGTSKTPVSKPAE 337

[Close]

BLAST of IVF0009697 vs. NCBI nr
Match: KAA0051153.1 (hypothetical protein E6C27_scaffold511G001060 [Cucumis melo var. makuwa] >TYK03746.1 hypothetical protein E5676_scaffold863G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 2.33e-32
Identity = 66/84 (78.57%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAK------------------SPLNVHLEG 60
          MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAK                  SPLNVHLEG
Sbjct: 1  MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAKVSSDDPNERGSSALGVPDSPLNVHLEG 60

Query: 61 FIELDNDESLTGPYAVDLTIEEVG 66
          FIELDNDESLTGPYAVDLTIEEVG
Sbjct: 61 FIELDNDESLTGPYAVDLTIEEVG 84

[Close]

BLAST of IVF0009697 vs. NCBI nr
Match: KAA0034034.1 (hypothetical protein E6C27_scaffold65G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 4.59e-30
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1  MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAK-SPLNVHLEGFIELDNDESLTGPYAVD 60
          M ATLEEE KE KDESDSSKSDRHWKR LKKAK S LN HLEG IELDNDESLTGP+AVD
Sbjct: 1  MAATLEEETKEDKDESDSSKSDRHWKRLLKKAKVSALNAHLEGLIELDNDESLTGPHAVD 60

Query: 61 LTIEEVGTAKTPVSKPAE 77
           + ++VGT KTPVSKPA+
Sbjct: 61 -SAKKVGTLKTPVSKPAK 77

[Close]

BLAST of IVF0009697 vs. NCBI nr
Match: KAA0048242.1 (hypothetical protein E6C27_scaffold63G001580 [Cucumis melo var. makuwa] >TYK08015.1 hypothetical protein E5676_scaffold265G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (294), Expect = 5.14e-30
Identity = 65/99 (65.66%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 1   MTATLEEEIKEHKDESDSSKSDRHWKRPLKKAK----------------------SPLNV 60
           M ATLEEEIKEHKDESDSSKSD HWKRPLKKAK                      SPLN 
Sbjct: 32  MAATLEEEIKEHKDESDSSKSDHHWKRPLKKAKVSGDDPDGKSSSALGVPDVPSLSPLND 91

Query: 61  HLEGFIELDNDESLTGPYAVDLTIEEVGTAKTPVSKPAE 77
           HLEG IELD++ESL GP+ VD TIEEVGT+KTPVSKP E
Sbjct: 92  HLEGLIELDSNESLMGPHEVDSTIEEVGTSKTPVSKPVE 130

The following BLAST results are available for this feature:

BLAST of IVF0009697 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009697 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZM5	5.4e-26	81.82	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TUP1	6.0e-25	79.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BZW1	1.7e-24	78.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D2A0	5.1e-24	69.57	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3BCT1	3.3e-23	65.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0009697 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044959.1	2.37e-33	79.22	hypothetical protein E6C27_scaffold74G002650 [Cucumis melo var. makuwa]	[more]
KAA0031667.1	1.76e-32	81.82	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK04444.1 putative m...	[more]
KAA0051153.1	2.33e-32	78.57	hypothetical protein E6C27_scaffold511G001060 [Cucumis melo var. makuwa] >TYK037...	[more]
KAA0034034.1	4.59e-30	79.49	hypothetical protein E6C27_scaffold65G00180 [Cucumis melo var. makuwa]	[more]
KAA0048242.1	5.14e-30	65.66	hypothetical protein E6C27_scaffold63G001580 [Cucumis melo var. makuwa] >TYK0801...	[more]

BLAST of IVF0009697 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009697.1	IVF0009697.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane