IVF0009673 (gene) Melon (IVF77) v1

Overview


Name	IVF0009673
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Increased rDNA silencing protein
Location	chr10: 1138390 .. 1138948 (+)
RNA-Seq Expression	IVF0009673
Synteny	IVF0009673

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCAAAATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGGTCCTCAACCACACGCACTACTCTATCTCTGTAATATCGACGATCTTCATCTCTTTAATTACTTCTTAAACACAAAATCTTTTTTTTCTATACATGTGCTGCAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGATTTTCGATAAGGG

mRNA sequence

GTGCAAAATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGATTTTCGATAAGGG

Coding sequence (CDS)

ATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGA

Protein sequence

MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVGLVFVGGSLGICLVSFIVRHFW

Homology

[Close]

BLAST of IVF0009673 vs. ExPASy TrEMBL
Match: A0A5A7SXL4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001490 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.1e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120
           RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG
Sbjct: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120

Query: 121 AVGLVFVGGSLGICLVSFIVRHFW 145
           AVGLVFVGGSLGICLVSFIVRHFW
Sbjct: 121 AVGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of IVF0009673 vs. ExPASy TrEMBL
Match: A0A1S3BFP0 (uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.1e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120
           RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG
Sbjct: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120

Query: 121 AVGLVFVGGSLGICLVSFIVRHFW 145
           AVGLVFVGGSLGICLVSFIVRHFW
Sbjct: 121 AVGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of IVF0009673 vs. ExPASy TrEMBL
Match: A0A0A0KRA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 9.4e-56
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61

Query: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122
           KKER   IPI IRQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 62  KKER--GIPIQIRQRGMEELDDGGRYL-WKLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121

Query: 123 VGLVFVGGSLGICLVSFIVRHFW 145
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 122 VGLVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of IVF0009673 vs. ExPASy TrEMBL
Match: A0A6J1D9Z1 (uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018723 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.5e-32
Identity = 91/145 (62.76%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 2   ASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSR-AGDEENEKDIVEANLTVLRTRMEDL 61
           ASSA L SFH+  P S R+R  +DH  APRCHS  + DEEN+KDIVEANLTVLR RMEDL
Sbjct: 5   ASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 64

Query: 62  RKKERRIPIPIPIRQRGMEEFDDGRRYLS---SKLDGGCFDGKKLKNGALISGCLEVVST 121
           RKKERRIP        G  EFD+   Y+S   +KLD  C + K +KN ALIS CLEV+S 
Sbjct: 65  RKKERRIP-----ASGGRIEFDNCWSYMSRSDAKLDRDC-ERKMVKNFALISECLEVISM 124

Query: 122 VGGAVGLVFVGGSLGICLVSFIVRH 143
            GGAVGLV VGGSLGICLVS ++RH
Sbjct: 125 AGGAVGLVLVGGSLGICLVSLLIRH 143

[Close]

BLAST of IVF0009673 vs. ExPASy TrEMBL
Match: A0A2R6QQP7 (Increased rDNA silencing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14068 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 45/137 (32.85%), Postives = 68/137 (49.64%), Query Frame = 0


Query: 4   SAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKK 63
           +  LPSF     PS + + P   C   RC S   DE N  ++V+ANL VLR R+ +++KK
Sbjct: 2   ATSLPSFCSLTKPSHKPKLPK--CPPVRCQSFHNDEGNSANMVDANLGVLRERIREVKKK 61

Query: 64  ERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVG 123
           E               + ++G  Y S       +D K   +G  +S  +E++  V  ++G
Sbjct: 62  E---------SLERCFKHENGWNYKSG------YDNKHKVHGK-VSESIELLGLVSSSLG 120

Query: 124 LVFVGGSLGICLVSFIV 141
            VF+ GS  I LVSF+V
Sbjct: 122 FVFLFGSFSILLVSFVV 120

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BLAST of IVF0009673 vs. NCBI nr
Match: XP_008446686.1 (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 uncharacterized protein E6C27_scaffold65G006220 [Cucumis melo var. makuwa] >TYK09158.1 uncharacterized protein E5676_scaffold475G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 288 bits (736), Expect = 6.24e-98
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120
           RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG
Sbjct: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120

Query: 121 AVGLVFVGGSLGICLVSFIVRHFW 144
           AVGLVFVGGSLGICLVSFIVRHFW
Sbjct: 121 AVGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of IVF0009673 vs. NCBI nr
Match: XP_011655810.1 (uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical protein Csa_008386 [Cucumis sativus])

HSP 1 Score: 224 bits (570), Expect = 1.15e-72
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61

Query: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122
           KKER   IPI IRQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 62  KKER--GIPIQIRQRGMEELDDGGRYLW-KLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121

Query: 123 VGLVFVGGSLGICLVSFIVRHFW 144
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 122 VGLVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of IVF0009673 vs. NCBI nr
Match: XP_038893300.1 (uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida])

HSP 1 Score: 181 bits (460), Expect = 6.74e-56
Identity = 103/146 (70.55%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 3   SSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRK 62
           +SA  PSFH FH P S +RRPSDH  APRCH   GDEEN+KDIV+ANLTVLR RMEDLRK
Sbjct: 2   ASARFPSFH-FHSPVSTRRRPSDHRRAPRCHGGVGDEENQKDIVDANLTVLRARMEDLRK 61

Query: 63  KERRIPIPIPIRQRGMEEFDDGRRYLS----SKLDGGCFDGKKLKNGALISGCLEVVSTV 122
           KERRIP+P    +RG  EFD+G RYLS    +K D   FDGK LK  ALI+GCLEVV+TV
Sbjct: 62  KERRIPLPA---RRGGLEFDNGWRYLSMSDGAKFDRS-FDGKILKKFALIAGCLEVVTTV 121

Query: 123 GGAVGLVFVGGSLGICLVSFIVRHFW 144
           GGAVGLVFVGGSLGICLV+ +VRHFW
Sbjct: 122 GGAVGLVFVGGSLGICLVALLVRHFW 142

[Close]

BLAST of IVF0009673 vs. NCBI nr
Match: XP_022150638.1 (uncharacterized protein LOC111018723 [Momordica charantia])

HSP 1 Score: 145 bits (366), Expect = 1.49e-41
Identity = 91/145 (62.76%), Postives = 103/145 (71.03%), Query Frame = 0


Query: 2   ASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGD-EENEKDIVEANLTVLRTRMEDL 61
           ASSA L SFH+  P S R+R  +DH  APRCHS   D EEN+KDIVEANLTVLR RMEDL
Sbjct: 5   ASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 64

Query: 62  RKKERRIPIPIPIRQRGMEEFDDGRRYLS---SKLDGGCFDGKKLKNGALISGCLEVVST 121
           RKKERRIP        G  EFD+   Y+S   +KLD  C + K +KN ALIS CLEV+S 
Sbjct: 65  RKKERRIPA-----SGGRIEFDNCWSYMSRSDAKLDRDC-ERKMVKNFALISECLEVISM 124

Query: 122 VGGAVGLVFVGGSLGICLVSFIVRH 142
            GGAVGLV VGGSLGICLVS ++RH
Sbjct: 125 AGGAVGLVLVGGSLGICLVSLLIRH 143

[Close]

BLAST of IVF0009673 vs. NCBI nr
Match: KAG7032048.1 (hypothetical protein SDJN02_06090, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108 bits (270), Expect = 3.49e-27
Identity = 69/119 (57.98%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 13  FHPPSSRQRRPSDHCSAPRCHSRAGDE---ENEKDIVEANLTVLRTRMEDLRKKERRIPI 72
           F+ PS  +RRPSDH  APRCH   GDE    N+KDIVEANLTVL+ RMEDLRKKERRIP+
Sbjct: 14  FYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPL 73

Query: 73  PIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVGLVFVG 128
           P   ++ G  E D+G RY S++      D K +KN ALISGCLEV+ST     GL F G
Sbjct: 74  P---KRLGGVEIDNGWRYRSTR--DAKLDRKVVKNFALISGCLEVMST-----GLCFQG 122

The following BLAST results are available for this feature:

BLAST of IVF0009673 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009673 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SXL4	4.1e-75	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFP0	4.1e-75	100.00	uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=...	[more]
A0A0A0KRA6	9.4e-56	85.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1	[more]
A0A6J1D9Z1	5.5e-32	62.76	uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A2R6QQP7	2.9e-04	32.85	Increased rDNA silencing protein OS=Actinidia chinensis var. chinensis OX=159084...	[more]

BLAST of IVF0009673 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446686.1	6.24e-98	100.00	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 unc...	[more]
XP_011655810.1	1.15e-72	85.31	uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical ...	[more]
XP_038893300.1	6.74e-56	70.55	uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida]	[more]
XP_022150638.1	1.49e-41	62.76	uncharacterized protein LOC111018723 [Momordica charantia]	[more]
KAG7032048.1	3.49e-27	57.98	hypothetical protein SDJN02_06090, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of IVF0009673 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..40
None	No IPR available	PANTHER	PTHR38225	PROTEIN, PUTATIVE-RELATED	coord: 1..144
None	No IPR available	PANTHER	PTHR38225:SF3	SUBFAMILY NOT NAMED	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009673.1	IVF0009673.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane