IVF0009566 (gene) Melon (IVF77) v1

Overview
NameIVF0009566
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr02: 8395501 .. 8395704 (-)
RNA-Seq ExpressionIVF0009566
SyntenyIVF0009566
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGAAGTGTGTATATCTGGATCAGACTCTTGATATTCCTTATATAAAATGTTACGAGGATACCCCTGTTGCTCCTCCTCGAGTCGAGGATGCTCCCTCTGCCCATCCTTACGTCCAACATCAATTTCGACCTCTTGCTCCTCTTTGTGAAGATAACCCTGTTACCTCTCATCATGTCATGCCCTGCCCTACCCCATGA

mRNA sequence

ATGGATGAGAAGTGTGTATATCTGGATCAGACTCTTGATATTCCTTATATAAAATGTTACGAGGATACCCCTGTTGCTCCTCCTCGAGTCGAGGATGCTCCCTCTGCCCATCCTTACGTCCAACATCAATTTCGACCTCTTGCTCCTCTTTGTGAAGATAACCCTGTTACCTCTCATCATGTCATGCCCTGCCCTACCCCATGA

Coding sequence (CDS)

ATGGATGAGAAGTGTGTATATCTGGATCAGACTCTTGATATTCCTTATATAAAATGTTACGAGGATACCCCTGTTGCTCCTCCTCGAGTCGAGGATGCTCCCTCTGCCCATCCTTACGTCCAACATCAATTTCGACCTCTTGCTCCTCTTTGTGAAGATAACCCTGTTACCTCTCATCATGTCATGCCCTGCCCTACCCCATGA

Protein sequence

MDEKCVYLDQTLDIPYIKCYEDTPVAPPRVEDAPSAHPYVQHQFRPLAPLCEDNPVTSHHVMPCPTP
Homology
BLAST of IVF0009566 vs. ExPASy TrEMBL
Match: A0A5A7V465 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00340 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  DEKCVYLDQTLDIPYIKCYEDTPVAPPRVEDAPSAHPYVQH 43
          +E+C YLD+T+DIP  +CYED P+AP RV+D P  H Y QH
Sbjct: 33 NEECAYLDRTIDIPSTECYEDNPIAPLRVKDVPPTHLYAQH 73

BLAST of IVF0009566 vs. ExPASy TrEMBL
Match: A0A5D3BND9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold69G00080 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 2  DEKCVYLDQTLDIPYIKCYEDTPVAPPRVEDAPSAHPYVQHQ 44
          +EKC YLD T DI  I+ YED P  P RVE+AP AHP+V HQ
Sbjct: 32 NEKCAYLDWTFDISSIEGYEDNPTTPLRVENAPPAHPHVLHQ 73

BLAST of IVF0009566 vs. NCBI nr
Match: KAA0047201.1 (hypothetical protein E6C27_scaffold83G00850 [Cucumis melo var. makuwa] >TYK01321.1 hypothetical protein E5676_scaffold69G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.82e-08
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0

Query: 2  DEKCVYLDQTLDIPYIKCYEDTPVAPPRVEDAPSAHPYVQHQF 44
          +EKC YLD T DI  I+ YED P  P RVE+AP AHP+V HQ 
Sbjct: 32 NEKCAYLDWTFDISSIEGYEDNPTTPLRVENAPPAHPHVLHQL 74

BLAST of IVF0009566 vs. NCBI nr
Match: KAA0061286.1 (hypothetical protein E6C27_scaffold455G001300 [Cucumis melo var. makuwa] >TYK09865.1 hypothetical protein E5676_scaffold39G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 2.28e-08
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  DEKCVYLDQTLDIPYIKCYEDTPVAPPRVEDAPSAHPYVQH 42
          +E+C YLD+T+DIP  +CYED P+AP RV+D P  H Y QH
Sbjct: 33 NEECAYLDRTIDIPSTECYEDNPIAPLRVKDVPPTHLYAQH 73

BLAST of IVF0009566 vs. NCBI nr
Match: KAA0068109.1 (Ulp1-like peptidase [Cucumis melo var. makuwa] >TYK26092.1 Ulp1-like peptidase [Cucumis melo var. makuwa])

HSP 1 Score: 46.6 bits (109), Expect = 9.48e-04
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0

Query: 1   MDEKCVYLDQTLDIPYIKCYEDTPVAPPRVEDAPSAH---------PYVQHQFRPLAPL- 54
           +DE+ VYLDQ LDIP+ + YED P AP +  DAP +H         P + H   PL P+ 
Sbjct: 136 IDEELVYLDQVLDIPFTEGYEDNPDAPLQDHDAPLSHLMASMKITHPSLDHCQPPL-PIH 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V4652.4e-0658.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BND92.7e-0561.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0047201.11.82e-0860.47hypothetical protein E6C27_scaffold83G00850 [Cucumis melo var. makuwa] >TYK01321... [more]
KAA0061286.12.28e-0858.54hypothetical protein E6C27_scaffold455G001300 [Cucumis melo var. makuwa] >TYK098... [more]
KAA0068109.19.48e-0444.62Ulp1-like peptidase [Cucumis melo var. makuwa] >TYK26092.1 Ulp1-like peptidase [... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009566.1IVF0009566.1mRNA